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Researchers at UCD

researcher

Séamus Fanning

Full Professor of Food Safety and Zoonoses

School Of Public Hlth, Phys & Sports Sci
Science Centre - South
Belfield
Dublin 4

Tel: +353 1 7162869
Email: sfanning@ucd.ie

Professional

Honours and Awards

Year: 1986.
Title: French Government travelling fellowship
Year: 1995.
Title: Fulbright Scholar, Baylor College of Medicine, Houston
Year: 2002.
Title: Chair of Food Safety & Zoonoses, University College Dublin

Associations

Association: American Society for Microbiology (ASM), Function/Role: Member
Association: The Biochemical Society., Function/Role: Member
     

Conference Contributions

O¿Mahony, E., Murphy, M., Buckley, J., Bolton, D. and Fanning, S; (2009) Distribution of Campylobacter in poultry flocks in Ireland. [Poster Presentation], International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria, Teagasc-Ashtown Food Research Centre, Dublin , 16-SEP-09 - 16-SEP-09.
C. Almeida, C., N. F. Azevedo, N.F., Iversen,, C., Fanning, S., Keevil, C.W. and Vieira, M.J; (2009) Development and application of a novel Peptide Nucleic Acid probe for the specific detection of Cronobacter (Enterobacter sakazakii) in powdered infant formula. [Poster Presentation], first International meeting on Cronobacter (Enterobacter sakazakii), O¿Reilly Hall, University College Dublin, Dublin, Ireland , 22-JAN-09 - 23-JAN-09.
S Fanning; (2009) What is and isn¿t Cronobacter (formerly Enterobacter sakazakii). [Oral Presentation], bioMerieux Conference on Food Microbiology, University of Parma, Italy , 06-MAY-09 - 06-MAY-09.
S Fanning; (2009) Multiple regulatory pathways associated with high-level ciprofloxacin & MDR in Salmonella Enteritidis. [Oral Presentation], Conference on Food Safety & Public Health-minimizing antibiotic resistance transmission through the food chain CSREES-USDA, Washington DC, USA , 02-APR-09 - 03-APR-09.
S Fanning; (2009) Molecular identification of Cronobacter sakazakii. [Oral Presentation], First International meeting on Cronobacter (Enterobacter sakazakii), O¿Reilly Hall, University College Dublin, Belfield, Dublin 4 Ireland , 22-JAN-09 - 23-JAN-09.
Rajtak, U., Leonard, N.C., Fanning, S. and Bolton, D; (2009) The influence of acid tolerance response ad diet on the survival of Salmonella through the gastrointestinal tract of pigs. [Poster Presentation], Safe Pork 2009 International Conference, Quebec, Canada , 30-SEP-09 - 02-OCT-09.
McCusker, M.P., O¿Regan, E., Quinn, T. and Fanning, S; (2009) A role for supercoiling in the fitness costs and stability of a high-level ciprofloxacin resistant phenotype in Salmonella enterica serotype Enteritidis. [Poster Presentation], 49th Interscience Conference on Antimicrobial Agents & Chemotherapy (ICAAC), San Francisco, California, USA , 12-SEP-09 - 15-SEP-09.
Solomon, K., McDermott, S., Scott, L., Murray, S., Skally, M., Martin, A., Fitzpatrick, F., Burns, K., Kuijper, E., Fanning, S., Fenelon, L. and Kyne, L.; (2009) Prevalence and antimicrobial susceptibility of Clostridium difficile ribotypes in Ireland, March 2009. [Poster Presentation], 49th Interscience Conference on Antimicrobial Agents & Chemotherapy (ICCAC) 2009, San Francisco, CA, USA , 12-SEP-09 - 15-SEP-09.
Bolton, D., Monaghan, A., Byrne, B., Sweeney, T, Kennedy, C.-A. and Fanning, S.; (2009) Serotypes and virulence genes of farm and abattoir verocytoxigenic Escherichia coli. [Poster Presentation], PEN International Conferencs 2009, Teagasc-Ashtown Food Research Centre, Dublin , 17-NOV-09 - 18-NOV-09.
Kennedy, C.A., Karczmarczyk, M., Byrne, B., Monaghan, A., Sweeney, T., Bolton, D. and Fanning, S.; (2009) Comparison of characterised antimicrobial resistance among Shiga-toxin producing Escherichia coli strains isolated from Irish cattle farms and abattoirs. [Poster Presentation], PEN International Conference 2009, Teagasc-Ashtown Food Research Centre, Dublin , 17-SEP-09 - 18-SEP-09.
Sheridan, A., Duffy, G., Iversen, C., Fanning, S. and Burgess, C.; (2009) Surveillance of antibiotic resistance and biocide resistance in verocytoxigenic Escherichia coli. [Poster Presentation], International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria, Teagasc-Ashtown Food Research Centre, Dublin , 16-SEP-09 - 16-SEP-09.
Monaghan, A., Byrne, B., Fanning, S., Sweeney, T., Kennedy, C.A., McDowell, D.A. and Boltion, D.J; (2009) Prevalence of emerging non-O157 verocytoxigenic (VTEC) and enteropathogenic (EPEC) Escherichia coli on Irish cattle and abattoirs. [Poster Presentation], International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria,, Teagasc-Ashtown Food Research Centre, Dublin , 16-SEP-09 - 16-SEP-09.
Monaghan, A., Byrne, B., McDowell, D.A., Carroll, A., McNamara, E., Fanning, S., Sweeney, T., Kennedy, C.A. and Boltion, D.J; (2009) International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria,. [Poster Presentation], Characterisation of VTEC O113 isolates using multilocus sequence typing (MLST and genotyping of virulence genes, Teagasc-Ashtown Food Research Centre, Dublin , 16-SEP-09 - 16-SEP-09.
McDonnell, M., Rivas, L., Burgess, C., Meade, K.G., O¿Farrelly, C., Fanning, S. and Duffy, G.; (2009) The use of antimicrobial peptide bovine beta-defensin 3b fort he inhibition of verocytoxigenic Escherichia coli in a model broth system. [Poster Presentation], International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria, Teagasc-Ashtown Food Research Centre, Dublin , 16-SEP-09 - 16-SEP-09.
McDonnell, M., Rivas, L., Burgess, C., Fanning, S. and Duffy, G.; (2009) The use of antimicrobial peptides caseicin A & B for the inhibition of Escherichia coli O157 in different environments uaing a model broth system. [Poster Presentation], the International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria,, Teagasc-Ashtown Food Research Centre, Dublin , 16-SEP-09 - 16-SEP-09.
McCabe, E., McCusker, M., Prendergast, D.M., Fanning, S. and Duffy, G; (2009) Multilocus variable number tandem repeat analysis of Salmonella enterica serovar Typhimurium using PCR multiplexing and analysis on an Agilent 2100. [Poster Presentation], the International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria, Teagasc-Ashtown Food Research Centre, Dublin , 16-SEP-09 - 16-SEP-09.
Martins, M., Karczmarczyk, M., McCusker, M., Mattar, S., Amaral, L. and Fanning, S.; (2009) Multi-drug resistance in Salmonella isolates recovered from Colombian food sources and exotic animals. [Poster Presentation], International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria, Teagasc-Ashtown Food Research Centre, Dublin , 16-SEP-09 - 16-SEP-09.
Kelly, S., Lenehan, M., Fanning, S. and Bolton, D.; (2009) Effect of diet on the survival of Salmonella in bovine rumen fluid and faeces. [Oral Presentation], International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria, Teagasc-Ashtown Food Research Centre, Dublin, , 16-SEP-09 - 16-SEP-09.
Kelly, S., Lenehan, M., Fanning, S. and Bolton, D.; (2009) The role of efflux pumps in the acid and antibiotic resistance of several of Salmonella serotypes. [Poster Presentation], International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria, Teagasc-Ashtown Food Research Centre, Dublin, , 16-SEP-09 - 16-SEP-09.
Iversen, C., Negredo, C. and Fanning, S.; (2009) The role of extracellularpolysaccharide capsule in environmental stress resistance of Cronobacter sakazakii. [Poster Presentation], the International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria, Teagasc-Ashtown Food Research Centre, Dublin , 16-SEP-09 - 16-SEP-09.
Haughton, P.N., Lyng, J., Morgan, D., Cronin, D., Fanning, S. and Whyte, P.; (2009) Impact of novel processing technologies on Campylobacter spp. [Poster Presentation], International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria, Teagasc-Ashtown Food Research Centre, Dublin, , 16-SEP-09 - 16-SEP-09.
Drummond, N., Murphy, B.M., Ringwood, T., Prentice, M.B., Buckley, J.F. and Fanning, S.; (2009) Prevalence and characterisation of Yersinia enterocolitica along the Irish food chain. [Poster Presentation], International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria,, Teagasc-Ashtown Food Research Centre, Dublin , 16-SEP-09 - 16-SEP-09.
Cooney, S., Healy, B., O¿Brien, S., Iversen, C. and Fanning, S.; (2009) Growth of Enterobacteriaceae in infant formula milk. [Poster Presentation], International Conference Food Processing Stresses & Associated genomics of Gram-negative food-borne bacteria,, Teagasc-Ashtown Food Research Centre, Dublin , 16-SEP-09 - 16-SEP-09.
Kennedy, C.A., Karczmarczyk, M., Byrne, B., Monaghan, A., Sweeney, T., Bolton, D. and Fanning, S.; (2009) Characterisation of antimicrobial susceptibility among Shiga-toxin producing Escherichia coli strains isolated from Irish cattle farms and abattoirs. [Poster Presentation], FEMS Annual Conferenecs 2009, Gittenburg, Sweden , 28-JUN-09 - 29-JUN-09.
S. Cooney, B. Healy, S. O¿Brien, C. Iversen, S. Fanning. ; (2009) Growth of Enterobacteriaceae in Infant Formula Milk. [Poster Presentation], 109th Annual General meeting of the American Society for Microbiology, Philadelphia, USA , 17-MAY-09 - 21-MAY-09.
B. Healy, S. Huynh, N. Mullane, S. O¿Brien, C. Iversen, A. Lehner, R. Stephan, C.T. Parker, S. Fanning; (2009) Microarray-based Comparative Genomic Indexing of Cronobacter (Enterobacter sakazakii). [Poster Presentation], 109th Annual General meeting of the American Society for Microbiology, Philadelphia, USA , 17-MAY-09 - 21-MAY-09.
Monaghan, A.M., Byrne, B., McDowell, D.A., Sweeney, T., Fanning, S. and Bolton, D.; (2009) Emerging non-O157 verocytoxigenic Escherichia coli on Irish cattle farms. [Poster Presentation], ProSafe Beef International Conference, Teagasc-ashtown Food Research Centre, Dublin, Ireland , 25-MAR-09 - 27-MAR-09.
Byrne, B., Monaghan, A.M., McDowell, D.A., Sweeney, T., Fanning, S. and Bolton, D.; (2009) The ecology of verocytotoxigenic Escherichia coli on bovine farms. [Poster Presentation], PEN International Conference on VTEC Escherichia coli, Oslo, Norway, Oslo, Norway , 22-FEB-09 - 23-FEB-09.
C. Iversen, A. Lehner, B. Healy, S. Fanning, R. Stephan. ; (2009) Comparison of virulence risk factors in Cronobacter and novel Enterobacter species. [Poster Presentation], 1st International Conference on Cronobacter, O'Reilly Hall, University College Dublin , 22-JAN-09 - 23-JAN-09.
C. Iversen, N. Mullane, B. McCardell, B.D. Tall, A. Lehner, E. Bidlas, J. Marugg, I. Cleenwerk, S. Fanning, R. Stephan, H. Joosten. ; (2009) The taxonomy and identification of Enterobacter sakazakii: a proposed new genus Cronobacter. [Poster Presentation], 1st International Conference on Cronobacter, O'Reilly Hall, University College Dublin , 22-JAN-09 - 23-JAN-09.
N. Mullane, M. Ryan, C. Iversen, M. Murphy, P. O¿Gaora, T. Quinn, P. Whyte, P.G. Wall, S. Fanning; (2009) Development of Multiple-Locus Variable Number Tandem Repeat Analysis for the molecular subtyping of Enterobacter sakazakii. [Poster Presentation], 1st International Conference on Cronobacter, University College Dublin , 22-JAN-09 - 23-JAN-09.
N. Mullane, B. Healy, P. O¿Gaora, J. Nally, C. Iversen, P. Whyte, P. Wall, S. Fanning; (2009) Molecular Analysis of the Enterobacter sakazakii O-Antigen Gene Locus. [Poster Presentation], 1st International Conference on Cronobacter, University College Dublin , 22-JAN-09 - 23-JAN-09.
C. Iversen, S. O¿Brien, B. Healy, C. Negredo, S. Fanning; (2009) Cronobacter (Enterobacter sakazakii) and the risk to infant health. [Poster Presentation], 1st International Conference on Cronobacter, University College Dublin , 22-JAN-09 - 23-JAN-09.
B. Healy, S O¿Brien, C. Negredo, C. Iversen, S. Fanning; (2009) Isolation and Characterization of Cronobacter (E. sakazakii) from Dried Milk and Related Products. [Poster Presentation], 1st International Conference on Cronobacter, University College Dublin , 22-JAN-09 - 23-JAN-09.
B. Healy, A. Lehner, J. Goetz, S. Fanning, R. Stephan, H. Joosten, C. Iversen ; (2009) Comparison of Biolog GN2, BBL Crystal ENF, RapID ONE and Rapid 32E Identification Systems for the Identification of Cronobacter (Enterobacter sakazakii). [Poster Presentation], 1st International Conference on Cronobacter, University College Dublin , 22-JAN-09 - 23-JAN-09.
B. Healy, N. Mullane, V. Collin, S. Mailler, C. Iversen, S. Chatellier, M, Storrs, S. Fanning; (2009) Evaluation of an Automated Repetitive Sequence-Based PCR System for Subtyping Enterobacter sakazakii. [Poster Presentation], 1st International Conference on Cronobacter, University College Dublin , 22-JAN-09 - 23-JAN-09.
S. Cooney, B. Healy, S O¿Brien, S. Fanning, C. Iversen; (2009) Growth of Enterobacteriaceae in Infant Formula Milk. [Poster Presentation], 1st International Conference on Cronobacter, University College Dublin , 22-JAN-09 - 23-JAN-09.
O. Condell, B. Healy, S. O¿Brien, S. Cooney, S. Fanning, C. Iversen; (2009) Isolation and characterisation of Cronobacter from infant food. [Poster Presentation], 1st International Conference on Cronobacter, University College Dublin , 22-JAN-09 - 23-JAN-09.
Molloy, C. Cagney, C., O¿Brien, S., Fanning S. and Duffy, G; (2009) Examination of cattle faeces, dairy farm and food environs for the presence of Cronobacter (E. sakazakii). [Poster Presentation], 1st International Conference on Cronobacter, University College Dublin , 22-JAN-09 - 23-JAN-09.
Tall., B.D., Kothary, M.H., Hu, L., Datta, A.R., Curtis, S.K., Carter, L., Sathyamoorthy, V., Kotewicz, M.L., Brown, E.W., O¿Neill, K.R., Ziobro, G., Restaino, L., Iversen, C., Fanning, S. and McCardell, B.A; (2009) Phenotypic diversity among Cronobacter spp. (formerly Enterobacter sakazakii). [Poster Presentation], first International meeting on Cronobacter (Enterobacter sakazakii), O¿Reilly Hall, University College Dublin, Dublin, Ireland , 22-JAN-09 - 23-JAN-09.
S Fanning; (2009) Molecular detection methods for Cronobacter (formerly Enterobacter sakazakii). [Oral Presentation], Fifth European Symposium on Food Safety-International Association of Food Protection (IAFP) Conference on Food Microbiology, Estrel Convention Centre, Berlin, Germany , 07-OCT-09 - 09-OCT-09.
Drudy D., Kyne L. and Fanning S.; (2006) Emergence of hypervirulent Clostridium difficile PCR-027 in three Dublin Hospitals. [Invited Oral Presentation], Irish Society of Gastroenterology, Killarney , 05-NOV-06.
Drudy D., Quinn T, O'Mahony R, Kyne L, O'Gaora P, Fanning S; (2006) Fluoroquinolone Resistance in Toxin A negative Toxin B positive Clostridium difficile associated with a novel mutation in gyr. [Invited Oral Presentation], European Congress on Chemotherapy & Infection, Budapest, Hungary , 26-OCT-06 - 28-OCT-06.
Walsh, C., Duffy, G., O'Mahony, R., O'Regan, E.S., McDowell, D.A. and Fanning, S; (2006) Transfer of antibiotic resistance from S. Typhimurium DT104 to E. coli K12 and S. Agona in food. [Poster Presentation (Refereed)], American Society for Microbiology (ASM) meeting on Salmonella from Pathogenesis to Therapeutics, Victoria, Canada , 09-SEP-06 - 13-SEP-06.
Drudy D., Quinn T, O'Mahony R, Kyne L, O'Gaora P and Fanning S; (2006) Fluoroquinolone Resistance in Toxin A negative Toxin B positive Clostridium difficile associated with a novel mutation in gyrB. [Invited Oral Presentation], Clostpath-2006, Nottingham United Kingdom , 01-JUN-06.
Mullane, N. and Fanning, S; (2006) Use of pulsed-field gel electrophoresis to characterise environmental isolates of Enterobacter sakazakii from a powdered infant milk formula manufacturing facility'. [Poster Presentation (Refereed)], American Society for Microbiology (ASM) Annual Scientific Meeting, Orlando, Florida, USA , 02-MAY-06.
Drudy, D., Quinn, T., O'Mahony, R., Kyne, L. and Fanning, ; (2006) 'Fluoroquinolone resistance in Toxin A nagative Toxin B positive Clostridium difficile associated with a novel mutation in gyrB. [Poster Presentation (Refereed)], American Society for Microbiology (ASM) Annual Scientific Meeting, Orlando, Florida, USA , 02-MAY-06.
Zintl, A., DeWaal, T., Neville, D., Mulcahy, G., Maguire, D., Leggett, B. and Fanning, S; (2006) Crytosporidium in pigs in Ireland. [Poster Presentation (Refereed)], COST 857 Workshop, Dresden, Germany , 17-MAY-06 - 19-MAY-06.
Abbott, Y., Rossney, A.S., Leonard, F.C., O'Mahony, R. Markey, B.K., Quinn, P.J., Pollock, P. and Fanning, S.; (2006) Methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals in Ireland. [Poster Presentation (Refereed)], Association of Veterinary Teachers and Research Workers (AVTRW), Liverpool, United Kingdom , 15-MAY-06 - 23-MAY-06.
Murphy, B.P., O'Mahony , E., Buckley, J.F. and Fanning, S.; (2006) Prevalence of emerging pathogens in Irish dairy herds'. [Poster Presentation (Refereed)], Safefood: All-Island Infectious Intestinal Disease Conference, Europa Hotel, Belfast, Northern Ireland , 18-JAN-06 - 19-JAN-06.
Corcoran, D., Quinn, T., Cotter, L., O'Halloran and Fanning, S.; (2005) Characterisation of a cmeABC operon in a quinolone resistant Campylobacter coli isolate of Irish origin'. [Poster Presentation], Gordon Research Conference, on 'Multidrug Efflux Systems, Magdalen College, Oxford University , 28-AUG-05 - 02-SEP-05.
Drudy, D., Narndy, N., Fanning, S., O'Mahony, R., Baird, A. and Kyne, L.; (2005) Toxin Variant Clostridium difficile in an Irish teaching hospital. [Poster Presentation (Refereed)], Conway Institute-Festival of Research, University College Dublin , 10-JUN-05 - 11-JUN-05.
Abbott, Y., Rossney, A.S., Leonard, F.C., O'Mahony, R. Markey, B.K., Quinn, P.J., Pollock, P. and Fanning, S.; (2005) Comparative features of methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals in Ireland. [Poster Presentation], Asscoiation of Veterinary Teachers and Research Workers (AVTRW), Dublin , 15-MAR-05 - 23-MAR-05.
Corcoran, D., Quinn, T., Cotter, L., Baird, A. and Fanning, S.; (2005) Involvement of efflux activity and target gene mutations in fluoroquinolone and erythromycin resistant in Irish human and poultry Campylobacter coli and Campylobacter jejuni isolates. [Invited Oral Presentation], 1st symposium on Antimicrobial Resistance in Animals and the Environment, Lyon, (France) , 23-FEB-05 - 25-FEB-05.
Santos, B., Martins, M., Viveiros, M., Couto, I., Pages, J.-M., Molnar, J., Fanning, S., Cruz, A. and Amaral, L.; (2005) An instrument free method for precise demonstration of efflux pump activity of bacteria. [Poster Presentation], Micro-Biotec-2005 Congress, Povoa de Varzim, (Portugal) , 30-NOV-05 - 03-DEC-05.
Acke, E., Whyte, P., Jones, B.R., McGill, K., Collins, J.D., Fanning, S.; (2004) Isolation method sensitivity for the isolation of Campylobacter spp from shelter pets. [Poster Presentation (Refereed)], Association of Veterinary Teachers and Research Workers (AVTRW), Scarborough, United Kingdom , 04-APR-04 - 06-APR-04.
Drudy, D, Harnedy, N., Fanning, S., O'Mahony, R., Baird, A and Kyne L.; (2004) Endemic Toxin Variant Clostridium difficile in an Irish Teaching Hospital. [Poster Presentation (Refereed)], First International Clostridium difficile Symposium, Gozd Martuljek, Slovenia , 05-MAY-04 - 08-MAY-04.
Rreidy, N., Lennon, G., O'Shea, H. and Fanning, S.; (2004) Detection and molecular epidemiological analysis of Norovirus in food and water supplies. [Poster Presentation], Marine Institute Research Workshop, Galway , 05-APR-04.
Murphy, B.P., Murphy, M., Buckley, J.F., Gilroy, D., Rowe, M.T., McCleery, D. and Fanning, S.; (2004) In-line milk filter analysis: herd-level surveillance of Escherichia coli O157 and Salmonella species in Irish dairy holdings. [Poster Presentation (Refereed)], Society for Applied Microbiology (sfam) Annual Conference 2004, University College, Cork , 15-JUL-04 - 18-JUL-04.
Murphy, M., Carroll., A., Whyte, P., McNamara, E. and Fanning, S.; (2004) Prevalence of Escherichia coli O26 and O111 in retail minced beef in Ireland. [Poster Presentation (Refereed)], Society for Applied Microbiology (sfam) Annual Conference 2004, University College, Cork , 15-JUL-04 - 18-JUL-04.
O'Mahony, R., O'Rourke, M., Saugy, M., Leonard, N, Whyte, P., Wall, P. and Fanning, S.; (2004) Molecular characterisation of antimicrobial resistance markers in a collection of Salmonella spp. from porcines. [Poster Presentation (Refereed)], FEMS International Conference on Food Science 2004, University of Llubjliana, Slovenia , 15-SEP-04 - 18-SEP-04.
O'Mahony, R., Abbott, Y., Leonard, N, Quinn, P.J. and Fanning, S.; (2004) Characterisation of a 2.6 kbp gene cassette identified in Acinetobacter baumannii from equines. [Poster Presentation], Acinetobacter 2004 International Conference, Royal College of Surgeons Ireland, Dublin , 15-SEP-04 - 18-SEP-04.
Murphy, M., Murphy, B.P., Buckley, J.F., Whyte, P. and Fanning, S.; (2004) MLVA characterisation of Irish verocytoxigenic Escherichia coli O157 from milk production holdings. [Poster Presentation (Refereed)], Cork Zoonoses Annual (International) Conference 2004, Cork , 19-OCT-04 - 20-SEP-04.
Fanning, S.; (2003) Division Z Lecture: 'Salmonella: Where does it come from and why?. [Invited Lecture], 103rd General Meeting, American Society of Microbiology, Washington DC, USA , 18-MAY-03 - 22-MAY-03.
Fanning, S.; (2006) Food Safety Research at UCD. [Invited Lecture], Invited Lecture presented to the a Institute of Food Hygiene, 'VetSuiss'-Faculty of Veterinary Medicine,, University of Zurich, Switzerland , 11-DEC-06.
Fanning, S.; (2006) 'The scientific basis of new rapid microbiological methods'. [Invited Lecture], Invited Lecture presented to the a Parenteral Drug Association (PDA)-Ireland Chapter,, Dublin City University (DCU), Dublin, 9 , 15-NOV-06.
Fanning, S.; (2006) 'Can targeting efflux pumps reduce the risk of human infection associated with zoonotic pathogens via the food chain'?. [Invited Lecture], Invited Lecture presented to the 8th European Congress on Chemotherapy & Infection (ECC),, Europa Congress Centre, Budapest, Hungary , 26-OCT-06 - 28-OCT-06.
Fanning, S.; (2006) 'Antimicrobial Resistance'. [Invited Lecture], Invited Lecture presented to the Annual 'Cattle Association of Veterinary Ireland (CAVI)' Meeting, The Clarion Hotel, Cork, , 14-OCT-06 - 15-OCT-06.
Fanning, S.; (2006) 'Food Safety Research at University College Dublin'. [Invited Lecture], Invited Lecture presented to the a Nestle Microbiology research group on Food Safety', Nestle Research Centre, Lausanne, Switzerland , 05-OCT-06.
Fanning, S.; (2006) 'Enterobacter sakazakii in Powdered Infant Formula'. [Invited Lecture], Invited Lecture presented to the a Food Safety Authority of Ireland (FSAI) Scientific Meeting on'Enterobacter sakazakii in Powdered Infant Formula', The Morrison Hotel, Dublin, , 02-OCT-06.
Fanning, S.; (2006) 'Supporting Ireland the Food Island through Surveillance'. [Invited Lecture], Invited Lecture presented on the occasion of the Royal visit of King Harald and Queen Sonja of Norway to the a joint UCD Veterinary School and Norwegian School of Veterinary Medicine Scientific Meeting on 'Functional Genomics-Improving Food Quality and Animal Health?,, William Jefferson Clinton Auditorium, University College Dublin , 19-SEP-06.
Fanning, S.; (2006) 'Formula to fight baby bug-Enterobacter sakazakii'. [Invited Lecture], Invited Lecture presented to the a Scientific Meeting on 'Food Safety-Where are we and Where are we going?', University College Cork, Cork , 07-SEP-06.
Fanning, S.; (2006) 'Working together on Collaboration & Control-Zoonoses do not recognise boarders'. [Invited Lecture], Opening Address to Cross Border Zoonotic Infection Education Conference,, Clarion Hotel, Sligo, , 06-APR-06.
Fanning, S.; (2006) 'Contribution of target gene mutations to quinolone and high-level erythromycin resistance in Campylobacter'. [Invited Lecture], Cost B16 Final Meeting on 'Reversal of antibiotic resistance (by inhibition of membrane transport)', Budapest, Hungary , 23-APR-06 - 26-APR-06.
Fanning, S.; (2006) 'Antimicrobial resistance: a moveable feast'. [Invited Lecture], Invited Lecture presented to the Department of Agriculture & Food (DAF), Veterinary Officers Annual Scientific Meeting, Institute of Public Administration, Adare, Co. Limerick, , 07-APR-06.
Fanning, S.; (2006) 'Antimicrobial resistance: a moveable feast'. [Invited Lecture], Invited Lecture presented to the Local Authority Veterinary Service (LAVS) Annual Scientific Meeting,, Institute of Public Administration, Dublin , 30-MAR-06.
Fanning, S.; (2005) 'Foodborne Zoonoses-Past, Present & Future'. [Invited Lecture], Invited Lecture to the Mid-West Health Board (MWHB), Limerick, Limerick , 10-MAR-05.
Fanning, S.; (2004) 'Food Safety, Spoilage and the Environment'. [Invited Lecture], Key Note Lecture to the Acinetobacter 2004, RCSI, Dublin 2, Dublin , 16-SEP-04.
Fanning, S.; (2004) 'Emerging Biological Hazards'. [Invited Lecture], Invited Lecture to the National Food Centre-Teagasc, Dublin 15, Dublin , 11-NOV-04.
Fanning, S.; (2004) 'Evolution of MDR islands in Salmonella'. [Invited Lecture], Key Note Lecture to the COST B16 EU Group Meeting, Paris, France , 29-NOV-04.
Dolan, A., Burgess, C., Barry, T., Fanning, S. and Duffy, G.; (2007) Development of a rapid nucleic acid-based method for total viable counts (TVC) on fresh meat using quantitative real-time PCR. [Oral Presentation], Proceedings of Rapid Methods Europe meeting, The Netherlands , 29-JAN-07 - 30-SEP-07.
Keating, D., Glynn, S., Britton, D., Crowe, M., Gallagher, C., Drudy, D., Fanning, S., McKone, E. and Gallagher, C; (2007) Epidemiology of infection in an adult cystic fibrosis unit. [Oral Presentation], Irish Society for Cystic Fibrosis Annual Scientific Meeting, Killarney, Co. Kerry , 02-FEB-07.
Mulherin, E., Collins, P.J., Whyte, P., and Fanning, S.; (2007) Porcine rotavirus: a prevalence study in Ireland. [Oral Presentation], AVTRW 61st Annual Conference, Scarborough, UK , 02-MAY-07 - 05-MAY-07.
McDonnell. M., Rivas, L., Burgess, C., Fanning, S. and Duffy, G; (2007) Antimicrobial agents for control of verocytotoxigenic E. coli at key stages in the beef chain. [Oral Presentation], inaugural Pathogenic Escherichia coli Network (PEN) meeting, Ashtown Food Research Centre, Dublin, Ireland , 26-APR-07 - 27-APR-07.
Duggan, S.J., Prendergast, D.M., Leonard, N., Mannion, C., Fanning, S. and Duffy, G.; (2007) Tracking of Salmonella positive pigs from farm-to-fork in the Republic of Ireland. [Oral Presentation], 7th International Symposium on the Epidemiology & Control of Foodborne Pathogens in Pork, Verona, Italy , 09-MAY-07 - 11-MAY-07.
Molloy, C., Cagney, C., Duffy, G, and Fanning, S.; (2007) A Method for Detection and Enumeration of Enterobacter sakazakii from Environmental Samples. [Oral Presentation], American Society for Microbiology (ASM) 107th Annual Scientific Meeting, Toronto, Canada , 21-MAY-07.
Iversen, C., Lehner, A., Mullane, N., Bidlas, E., Cleenwerck., I., Marugg, J., Fanning, S., Stephan, R. and Joosten, H.; (2007) The taxonomy and identification of Enterobacter sakazakii: a new genus Cronobacter. [Oral Presentation], American Society for Microbiology (ASM) 107th Annual Scientific Meeting, Toronto, Canada , 21-MAY-07.
Murphy, M., Buckley, J.F., Whyte, P., O'Mahony, M., Anderson, W., Wall., P.G. and., Fanning, S.; (2007) Development and application of Multiple-Locus Variable Number of Tandem Repeat Analysis (MLVA) to subtype a collection of Listeria monocytogenes. [Oral Presentation], MedVetNet scientific, Lucca, Italy , 27-JUN-07 - 29-JUN-07.
Mullane, N.R., Whyte, P., O'Mahony, Wall., P.G., Quinn, T. and., Fanning, S.; (2007) Application of pulsed-field gel electrophoresis to characterize and trace the prevalence of Enterobacter sakazakii in an infant formula processing facility. [Oral Presentation], MedVetNet scientific, Lucca, Italy , 27-JUN-07 - 29-JUN-07.
Patriarchi, A., Maunsell, B., Fanning, S. and Bolton, B; (2007) An investigation into the sources and distribution of Campylobacter in chicken broiler flocks on the island of Ireland. [Oral Presentation], 14th International Workshop on Campylobacter, Helicobacter & Related Organisms (CHRO), Rotterdam, The Netherlands , 02-SEP-07 - 05-SEP-07.
McCabe, E., Burgess, C., Barry, T., Fanning, S. and Duffy, G.; (2007) Development of a reverse-transcriptase real-time PCR for the detection of Salmonella on fresh meat. [Oral Presentation], 161th Meeting of the Society of General Microbiology, Edinburgh, Scotland , 03-SEP-07 - 06-SEP-07.
Dolan, A., Burgess, C., Barry, T., Fanning, S. and Duffy, G.; (2007) Development of a novel quantitative reverse-transcriptase real-time PCR for total viable counts on fresh meat. [Oral Presentation], 161th Meeting of the Society of General Microbiology, Edinburgh, Scotland , 03-SEP-07 - 06-SEP-07.
O'Neill, C., Fanning, S. and Bolton, D.; (2007) The incidence of Salmonella, diarrheagenic E. coli & Campylobacter on Irish beef and dairy farms. [Oral Presentation], 161th Meeting of the Society of General Microbiology, Edinburgh, Scotland , 03-SEP-07 - 06-SEP-07.
Murphy, B.P., Drummond, N., Ringwood, T., Buckley, J.F., Prentice, M.B. and Fanning, S.; (2007) Prevalence and characterisation of Yersinia enterocolitica along the Irish food chain. [Oral Presentation], 161th Meeting of the Society of General Microbiology, Edinburgh, Scotland , 03-SEP-07 - 06-SEP-07.
Arku, B., Fox, E., Mullane, N., Fanning, S. and Jordan, K.; (2007) Survival of Enterobacter sakazakii during spray drying. [Oral Presentation], World Dairy Summit, Dublin, Ireland , 03-SEP-07 - 06-SEP-07.
McCabe, E., Burgess, C., Barry, T., Fanning, S. and Duffy, G.; (2007) A real-time assay for the sensitive and specific detection of Salmonella spp. on fresh meat. [Oral Presentation], Proceedings of Rapid Methods Europe meeting, The Netherlands , 29-JAN-07 - 30-JAN-07.
Keating, D., Britton, D., Crowe, M., Gallagher, C., Drudy, D. and Fanning, S.; (2007) Identification of non-lactose fermenters from adult cystic fibrosis patients using phenotypic and genotypic methods. [Oral Presentation], Irish Society for Cystic Fibrosis Annual Scientific Meeting, Killarney, Co. Kerry , 02-FEB-07.
Fanning, S; (2007) Update on Food Safety Research at UCD. [Invited Oral Presentation], Food Safety Advisory Board, Royal Numico MV, Amsterdam, The Netherlands , 09-JAN-07.
Fanning, S; (2007) Enterobacter sakazakii: an emerging pathogen relevant to infant health . [Invited Oral Presentation], Novartis-Matters close to your heart meeting, Druids Glen Hotel, Co. Wicklow , 19-MAY-07.
Fanning, S; (2007) Exploring research & technology transfer opportunities between Backweston and UCD Centre for Food Safety. [Invited Oral Presentation], Department of Agriculture & Food, Backweston, Co. Kildare , 19-FEB-07.
Fanning, S; (2007) Mechanisms of fluoroquinolone resistance in Salmonella Enteritidis. [Invited Oral Presentation], Summer school on 'Transport across membranes multiple drug resistance, mechanisms and new tools, Jacobs University, Bremen, Germany , 08-JUL-07 - 14-JUL-07.

Committees

Committee : FAO/WHO Expert Group on follow-on formula
Committee : Wellcome Trust
Committee : Irish Codex Committee-Department of Agriculture & Food
Committee : Microbiology Advisory Committee of the Food Safety Authority of Ireland (FSAI)
Committee : Management Committee of the EU Cost Action B16 Group
Committee : Abu Dhabi Food Control Authority (ADFCA)
Committee : Scientific Advisory Committee of Safefood
Committee : Joint FAO/WHO Inception Meeting on Enterohaemorrhagic Escherichia coli
Committee : EU-US Safe Food Network
Committee : Food Safety Authority (EFSA) Working Group on Antimicrobial Resistant Pathogens in Food
Committee : UK Biotechnology & Biological Sciences Research Council (BBSRC)

Employment

Employer: UCD
Position: Professor of Food Safety Centre
Employer: Cork Institute of Technology
Position: Head of Department & Senior Lecturer

Education

Year 1983 Institution:
Qualification: BSc Subject:
Year 1990 Institution:
Qualification: PhD Subject:
         

Publications

Books

O'Mahony, M. and Fanning, S. and Whyte, P. (2009) The Safety of Raw Liquid Milk. : Wiley-Blackwell. [DOI] [Details]
Whyte, P. and Fanning, S. and O'Brien, S. and O'Grady, L. and Solomon, K. (2010) Tracing pathogens in red meat and game production chains and at the abattoir. : Elsevier Ltd. [DOI] [Details]
Condell, O. and Iversen, C. and Power, K. and Fanning, S. (2011) Human Safety and Environmental Concerns Associated with the Use of Biocides. : John Wiley and Sons. [DOI] [Details]
Amaral, L. and Fanning, S. and Spengler, G. and Rodrigues, L. and Iversen, C. and Martins, M. and Martins, A. and Viveiros, M. and Couto, I. (2011) Genetic regulation, physiology, assessment and inhibition of efflux pumps responsible for multi-drug resistant phenotypes of bacterial pathogens. : Nova Science Publishers, Inc. [Details]
Amaral, L. and Martins, A. and Spengler, G. and Martins, M. and Rodrigues, L. and McCusker, M. and Ntokou, E. and Cerca, P. and Machado, L. and Viveiros, M. and Couto, I. and Fanning, S. and Kristiansen, J. and Molnar, J. (2012) Structure, Genetic Regulation, Physiology and function of the acrab-tolc efflux pump of escherichia coli and salmonella. : CABI Publishing. [Details]
Amaral, L. and Fanning, S. and Spengler, G. and Rodrigues, L. and Iversen, C. and Martins, M. and Martins, A. and Viveiros, M. and Couto, I. (2012) Genetic regulation, physiology, assessment and inhibition of efflux pumps responsible for multi-drug resistant phenotypes of bacterial pathogens. : Nova Science Publishers, Inc. [Details]
Tall, B.D.a and Grim, C.J.a b and Franco, A.A.a and Jarvis, K.G.a and Hu, L.a and Kothary, M.H.a and Sathyamoorthy, V.a and Gopinath, G.a and Fanning, S.c (2013) Cronobacter Species (formerly Enterobacter sakazakii). : Elsevier Inc. [DOI] [Details]
Tall, B.D. and Grim, C.J. and Franco, A.A. and Jarvis, K.G. and Hu, L. and Kothary, M.H. and Sathyamoorthy, V. and Gopinath, G. and Fanning, S. (2013) Cronobacter Species (formerly Enterobacter sakazakii). : Elsevier Inc. [DOI] [Details]
Quinn PJ, Markey BK, Leonard FC, FitzPatrick ES, Fanning S and Hartigan PJ; (2011) Veterinary Microbiology and Microbial Disease Second Edition. Chichester, West Sussex, UK: Wiley-Blackwell. [Details]

Book Chapters

Finn, S., McClure, P., Amézquita, A. and Fanning, S. (2014) 'Transcriptomic responses of Salmonella species to desiccation and low-moisture environments: extending our knowledge of how bacteria cope with low-moisture stress' In: J.B. Gurtler, M.P. Doyle and J.L. Kornaki (eds). Microbiological safety of low water activity foods and spices. Amsterdam, The Netherlands: Springer. , pp.49-66 [DOI] [Details]
Yan, Q. and Fanning, S (2015) 'Pulsed-field gel electrophoresis (PFGE) for pathogenic Cronobacter species' In: K. Jordan and M. Dalmasso (eds). Methods in molecular biology. Amsterdam, The Netherlands: Springer. , pp.55-69 [DOI] [Details]
Luque-Sastre, L., Fanning, S. and Fox, E. (2015) 'Pulsed-field gel electrophoresis (PFGE) for Listeria monocytogenes' In: K. Jordan and M. Dalmasso (eds). Methods in molecular biology. Amsterdam, The Netherlands: Springer. , pp.43-53 [DOI] [Details]
Muensritharam, L., Fanning S. and Meharg, C (2016) 'Pathogens in milk: Enterobacter species' In: B. Caballero, P. Finglas, P. and F. Toldrá (eds). Encyclopedia of Dairy Science; 2nd edition. The Netherlands: Elsevier Inc. , pp.545-551 [DOI] [Details]
Rogers L., Power K., Ó Gaora P. and Fanning S. (2016) 'Escherichia coli and Other Enterobacteriaceae: Occurrence and Detection' In: B. Caballero, P. Finglas and F. Toldrá (eds). The Encyclopedia of Food and Health. Oxford, United Kingdom: Oxford Academic Press. , pp.545-551 [Details]
Li, F. and Fanning, S. (2017) 'Antimicrobial resistance in food-related bacteria' In: J. Jen & J Chen (eds). Food Safety in China: science, technology, management and regulation. Eds. J. Jen & J Chen. USA: John Wiley & Sons Ltd.. , pp.163-184 [Details]
Amaral L, Fanning S, Spengler G, Rodrigues L, Iversen, C., Martins M, Martins A, Viveiros M, Couto I. (2010) 'Chapter XII - Genetic regulation, physiology, assessment and inhibition of efflux pumps responsible for multi-drug resistant phenotypes of bacterial pathogens' In: Agoston Meszaros and Gusztav Balogh (eds). Multiple Drug Resistance. New York, USA: NovaScience Publishers. [Details]
Whyte, P., Gibbons, J., Murphy, M., O'Mahony, E., Haughton, P., O'Brien, S., Fanning, S. (2016) 'Pathogens in Milk:Campylobacter spp' In: B. Caballero, P. Finglas, P. and F. Toldrá (eds). Encyclopedia of Dairy Science; 2nd edition. The Netherlands: Elsevier Inc. [DOI] [Details]
14. Whyte, P., Fanning, S. (2011) 'Safety of Meat Products' In: 14. Whyte, P., Fanning, S (eds). Microbial Food Safety - An Introduction. New York: Springer press. , pp.147-158 [Details]
O'Brien, S., Whyte, P., Iversen, C., Fanning, S (2011) 'Chapter 6: Sampling, transport and sample preparation in emergency situations and rapid response' In: O¿Brien, S., Whyte, P., Iversen, C., Fanning, S (eds). Rapid Detection, Characterization, and Enumeration of Foodborne Pathogens. Washington DC: ASM Press. , pp.95-101 [Details]
O¿Brien, S., Whyte, P., Iversen, C., Fanning, S; (2011) 'Sampling, transport and sample preparation in emergency situations and rapid response' In: Hoorfar, J (eds). Rapid Detection, Characterization, and Enumeration of Foodborne Pathogens. Washington: ASM Press. , pp.95-101 [Details]
Whyte, P., Fanning, S., O¿Brien, S., O¿Grady, L, Solomon, K; (2011) 'Tracing pathogens in red meat and game production chains and at the abattoir' In: Brul, S, Fratamico, P.M., McMeekin, T.A (eds). Tracing Pathogens in the Food Chain. Cambridge: Woodhead Publishing. [Details]
11. Whyte, P., Haughton, P., O¿Brien, S., Fanning, S., O¿Mahony, E, Murphy, M. ; (2011) 'Pathogens in milk: Campylobacter spp' In: Fuquay J.W., Fox, P.F., McSweeney, P.L.H (eds). Encyclopedia of Dairy Sciences. San Diego, USA: Academic Press. , pp.40-46 [Details]
Fanning, S., Whyte, P., O'Mahony, M.; (2009) 'Essential veterinary education on the development of antimicrobial and anti-parasitic resistance: consequences for animal health and food safety and the need for vigilance' In: Fanning, S., Whyte, P., O'Mahony, M.; (eds). OIE Scientific and Technical Review, Volume 28 (2). Veterinary Education for global animal and public health. Paris: Office International des Epizooties. , pp.575-582 [Details]
O'Mahony, M., Fanning, S., Whyte, P.; (2009) 'The safety of raw liquid milk' In: Tamime, A.Y (eds). Milk Processing and Quality Management. Oxford, UK: Wiley-Blackwell. [Details]
O'Brien, S., Whyte, P., Fanning, S.; (2008) 'Shigella' In: O'Brien, S., Whyte, P., Fanning, S.; (eds). Food Safety Handbook. Lyon: Biomerieux. [Details]
Fanning, S., Lucey, B., O'Halloran, F., Corcoran, D. Whyte, P.; (2005) 'Antimicrobial surveillance and the emergence of resistance in Campylobacter spp' In: Fanning, S., Lucey, B., O'Halloran, F., Corcoran, D. Whyte, P.; (eds). Food Safety Assurance and Veterinary Public Health (volume 3) Risk Management Strategies: Monitoring and Surveillance. Wageningen: Wageningen Academic Press. [Details]
Fanning, S., Lucey, B., O'Halloran, F., Corcoran, D. Whyte, P.; (2006) 'Antimicrobial surveillance and the emergence of resistance in Campylobacter spp' In: Fanning, S., Lucey, B., O'Halloran, F., Corcoran, D. Whyte, P.; (eds). Food Safety Assurance and Veterinary Public Health (volume 3) Risk Management Strategies: Monitoring and Surveillance. Wageningen: Wageningen Academic Press. [Details]
 

Peer Reviewed Journals

Peng, Z., Wand, W., Liu, H., Fanning, S., Hu, Y., Zhang, J. and Li, F. (2017) 'Genomic insights into the pathogenicity and environmental adaptability of Enterococcus hirae R17 from pork offered for retail sale'. MicrobiologyOpen, . [Details]
Wang, W., Peng, Z., Hu, Y., Xu, J., Dong, Y., Yan, S., Fanning, S. and Li, F. (2017) 'Genomic characterisation of a large plasmid containing a blaNDM-1 gene carried on Salmonella enterica serovar Indiana C629 from China'. BMC Infectious Diseases, 17 :479. [DOI] [Details]
Hu, Y., He, Y., Wang, Y., Fanning, S., Cui, S., Chen, Q., Liu, G., Chen, Q., Zhou, G., Yang, B., Huang, J. and Li, F. (2017) 'Serovar diversity and antimicrobial resistance of non-typhoidal Salmonella enterica recovered form retail chicken carcasses for sale in different regions of China'. Food Control, 81 :46-54. Available Online [Details]
Shahid, M., Wang, J., gu, X., Chen, W., Ali, T., Gao, J., Han, D, Yang, R., Fanning, S. and Han, B. (2017) 'Prototheca zopfii induced ultrastructureal features associated with apoptosis in bovine mammary epithelial cells'. Frontiers in cellular and infection microbiology, 7 :299. [DOI] [Details]
Wang, J., Yuan, M., Chen, H., Chen, X., Jia, Y., Zhu, X., Bai, L., Fanning, S., Lu, J. and Li, J. (2017) 'First report of Klebsiella oxytoca strain simultaneously producing NDM-1, IMP-4 and KPC-2 carbapenemases'. Antimicrobial Agents and Chemotherapy, . [DOI] [Details]
Reid, R., Burgess, C.M., McCabe, E., Fanning, S., Whyte, P., Kerry, J.P. and Bolton, D. (2017) 'Real-time PCR methods for the detection of blown pack spoilage causing Clostridium species; C. estertheticum, C. gasigenes and C. ruminantium'. Meat Science, 133 :56-60. [DOI] [Details]
Sun, M., Gao, J., Ali, T., Yu, D., Zhang, S., Khan, S.U., Fanning, S. and Han, B. (2017) 'Characteristics of Aerococcus viridans isolated from bovine subclinical mastitis and its effects on milk SCC, yield and composition'. Tropical Animal Health and Production, 49 :843-849. [DOI] [Details]
Drudy D, Fanning S;Kyne L (2006) 'Toxin A-negative, toxin B-positive Clostridium difficile'. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 11 (1):5-10. [DOI] [Details]
Drudy, D., Quinn, T., O'Mahony, R., Kyne, L., ÿ'Gaora, P., Fanning, S. (2006) 'High-level resistance to moxifloxacin and gatifloxacin associated with a novel mutation in gyrB in toxin-A-negative, toxin-B-positive Clostridium difficile'. Journal of Antimicrobial Chemotherapy, 58 (6):1264-1267. Available Online [DOI] [Details]
Drudy D, Harnedy N;Fanning S;O'Mahony R;Kyne L (2007) 'Isolation and characterisation of toxin A-negative, toxin B-positive Clostridium difficile in Dublin, Ireland'. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 13 (3):298-304. [DOI] [Details]
Drudy, D., Harnedy, N., Fanning, S., Hannan, M., Kyne, L. (2007) 'Emergence and control of fluoroquinolone-resistant, toxin A-negative, toxin B-positive Clostridium difficile'. Infection Control and Hospital Epidemiology, 28 (8):932-940. Available Online [DOI] [Details]
Long, S., Fenelon, L., Fitzgerald, S., Nolan, N., Burns, K., Hannan, M., Kyne, L., Fanning, S., Drudy, D. (2007) 'First isolation and report of clusters of Clostridium difficile PCR 027 cases in Ireland'. Euro surveillance : bulletin européen sur les maladies transmissibles=European communicable disease bulletin, 12 (4):E070426.3. Available Online [Details]
Drudy, D., Kyne, L., O'Mahony, R., Fanning, S. (2007) 'gyrA mutations fluoroquinoloneresistant Clostridium difficile PCR-027 [3]'. Emerging Infectious Diseases, 13 (3):504-505. Available Online [Details]
Drudy, D., Harnedy, N., Fanning, S., O'Mahony, R., Kyne, L. (2007) 'Isolation and characterisation of toxin A-negative, toxin B-positive Clostridium difficile in Dublin, Ireland'. Clinical Microbiology and Infection, 13 (3):298-304. Available Online [DOI] [Details]
Drudy, D., Fanning, S., Kyne, L. (2007) 'Toxin A-negative, toxin B-positive Clostridium difficile'. International Journal of Infectious Diseases, 11 (1):5-10. Available Online [DOI] [Details]
Drudy, D., Goorhuis, B., Bakker, D., Kyne, L., Van Den Berg, R., Fenelon, L., Fanning, S., Kuijper, E.J. (2008) 'Clindamycin-resistant clone of Clostridium difficile PCR ribotype 027, Europe'. Emerging Infectious Diseases, 14 (9):1485-1487. Available Online [DOI] [Details]
Lenahan, M, O⿿Brien, SB, Byrne, C, Ryan, M, Kennedy, C⿐A, McNamara, EB, Fanning, S, Sheridan, JJ, Sweeney, T (2009) 'Molecular characterization of Irish E. coli O157: H7 isolates of human, bovine, ovine and porcine origin'. JOURNAL OF APPLIED MICROBIOLOGY, 107 (4):1340-1349. [Details]
Scott, L, McGee, P, Walsh, C, Fanning, S, Sweeney, T, Blanco, J, Karczmarczyk, M, Earley, B, Leonard, N, Sheridan, JJ (2009) 'Detection of numerous verotoxigenic E. coli serotypes, with multiple antibiotic resistance from cattle faeces and soil'. Veterinary Microbiology, 134 (3):288-293. [Details]
Burns, K., Skally, M., Solomon, K., Scott, L., McDermott, S., O'Flanagan, D., Fanning, S., Kyne, L., Fenelon, L., Fitzpatrick, F. (2010) 'Clostridium difficile infection in the Republic of Ireland: Results of a 1-month national surveillance and ribotyping project, March 2009'. Infection Control and Hospital Epidemiology, 31 (10):1085-1087. Available Online [DOI] [Details]
Solomon, K., Fanning, S., McDermott, S., Murray, S., Scott, L., Martin, A., Skally, M., Burns, K., Kuijper, E., Fitzpatrick, F., Fenelon, L., Kyne, L. (2011) 'PCR ribotype prevalence and molecular basis of macrolide-lincosamide-streptogramin B (MLSB) and fluoroquinolone resistance in Irish clinical Clostridium difficile isolates'. Journal of Antimicrobial Chemotherapy, 66 (9):1976-1982. Available Online [DOI] [Details]
Solomon, K., Murray, S., Scott, L., McDermott, S., Drudy, D., Martin, A., O'Donoghue, C., Skally, M., Burns, K., Fenelon, L., Fitzpatrick, F., Kyne, L., Fanning, S. (2011) 'An investigation of the subtype diversity of clinical isolates of irish Clostridium difficile ribotypes 027 and 078 by repetitive-extragenic palindromic PCR'. Journal of Medical Microbiology, 60 (8):1080-1087. Available Online [DOI] [Details]
Bolton, DJ, Monaghan, A, Byrne, B, Fanning, S, Sweeney, T, McDowell, DA (2011) 'Incidence and survival of non⿐O157 verocytotoxigenic Escherichia coli in soil'. JOURNAL OF APPLIED MICROBIOLOGY, 111 (2):484-490. [Details]
O'Donoghue, C., Iversen, C., Duggan, J., Power, D., Fanning, S., Kyne, L. (2012) 'Polypharmacy is an independent risk factor for oropharyngeal isolation of gram-negative bacilli in older persons'. Journal of the American Geriatrics Society, 60 (1):182-183. Available Online [DOI] [Details]
Solomon, K., Martin, A.J., O'Donoghue, C., Chen, X., Fenelon, L., Fanning, S., Kelly, C.P., Kyne, L. (2013) 'Mortality in patients with Clostridium difficile infection correlates with host pro-inflammatory and humoral immune responses'. Journal of Medical Microbiology, 62 :1453-1460. Available Online [DOI] [Details]
Monaghan, A, Byrne, B, Fanning, S, Sweeney, T, McDowell, D, Bolton, DJ (2013) 'Serotypes and virulence profiles of atypical enteropathogenic Escherichia coli (EPEC) isolated from bovine farms and abattoirs'. JOURNAL OF APPLIED MICROBIOLOGY, 114 (2):595-603. [Details]
Hurley, D., Luque, L., De Lapp, N., Moore, J.E., Cormican, M., Jordan, K., Fanning, S. and Fox. E. (2014) 'Hurley, D., Luque, L., De Lapp, N., Moore, J.E., Cormican, M., Jordan, K., Fanning, S. and Fox. E'. Journal of Food Protection, 77 :1402-1406. [DOI] [Details]
Wang, J., Stephan, R., Power, K., Yan, Q., Hächler, H. and Fanning, S. (2014) 'Nucleotide sequences of 16 transmissible plasmids identified in nine multi-drug resistant Escherichia coli isolates expressing an ESBL phenotype isolated from food-producing animals and healthy humans'. Journal of Antimicrobial Chemotherapy, 69 :2658-2668. [DOI] [Details]
Condell, O., Power, K.A., Händler, K., Finn, S., Sheridan, A., Sergent, K., Renaut, J., Burgess, C., Hinton, J.C.D., Nally, J. and Fanning, S. (2014) 'Comparative analysis of Salmonella susceptibility and tolerance to the biocide chlorhexidine identifies a complex cellular defence network'. Frontiers in Microbiology, 5 :373. [DOI] [Details]
Stephan, R., Grim, C.J., Gopinath, G.R., Mammel, M.K., Sathymoorthy, V., Trach, L.H., Chase, H.R., Fanning, S. and Tall, B.D. (2014) 'Re-examination of the taxonomic status of Enterobacter helveticus sp. nov., Enterobacter pulveris sp. nov., and Enterobacter turicensis sp. nov. as members of Cronobacter: proposal of two new genera Gilvobacter gen. nov. and Francobacter gen. nov. and descriptions of Siccibacter turicensis sp. nov., Franconibacter helveticus sp. nov., and Franconibacter pulveris sp. nov. using whole genome sequencing, genotypic and phenotypic assessments, and k-mer analysis'. International Journal of Systematic and Evolutionary Microbiology, 64 :3402-3410. [DOI] [Details]
Doran, R., Carroll, M.P., Akula, R., Hogan, B., Martins, M., Fanning, S. and Guiry, P. (2014) 'A sterioselective switch; enantiodivergent approach to the synthesis of isoflavanones'. Chemistry - A European Journal, 20 :15354-15349. [DOI] [Details]
Zurfluh, K., Wang, J., Klumpp, J., Nüesch-Inderbinen, M., Fanning, S. and Stephan, R. (2014) 'Vertical transmission of highly similar blaCTX-M-1 harbouring IncI1 plasmids in Escherichia coli with different MLST types along the poultry production pyramid'. Frontiers in Microbiology, 5 :519. [DOI] [Details]
Burns, A., Shore, A.C., Brennan, G.I., Coleman, D.C., Egan, J., Fanning, S., Galligan, M.C., Gibbons, J.F., Gutierrez, M., Malhotra-Kumar, S., Markey, b., Sabirova, J.S., Wang, J. and Leonard, F. (2014) 'A longtidunal study of Staphylococcus aureus colonization in pigs in Ireland'. Veterinary Microbiology, 174 :504-513. [Details]
Collins, P.J., Mulherin, E., O'Shea, H., Cashman, O., Lennon, G., Pidgeon, E., Coughlan, S., Hall, W. and Fanning, S. (2015) 'Changing patterns of rotavirus strains circulating in Ireland: Re-emergence of G2P[4] and identification of novel genotypes in Ireland'. Journal of Medical Virology, 87 :764-773. [DOI] [Details]
Zurfluh, K., Power, K., Klumpp, J., Fanning, S., Stephan, R. (2015) 'A novel Tn3-like composite transposon harbouring blaVIM-1 in Klebsiella pneumonia spp. pneumoniae from river water'. Microbial Drug Resistance, 21 :43-49. [DOI] [Details]
Wang, J., Stephan, R., Zurfluh, K., Hächler, H. and Fanning, S. (2015) 'Characterisation of blaESBL genes and addiction modules located on 14 conjugative plasmids identified in multi-drug resistant Escherichia coli isolates from food-producing animals and healthy humans'. Frontiers in Microbiology, 5 :716. [DOI] [Details]
De Majumdar, S., Yu, J., McAteer, S., Fookes, M., Llobet, E., Finn, S., Spence, S., Monaghan, A., Kissenpfennig, A., Ingram, R., Bengoechea, J., Gally, D.E., Fanning, S., Thomson, N.R., Elborn, J.S. and Schneiders, T. (2015) 'Elucidation of the RamA regulon in Klebsiella pneumoniae reveals a role in LPS regulation'. PLoS Pathogens, 11 :e1004766. [DOI] [Details]
Tall, B.D., Gangiredla, J., Gopinath, G.R., Yan, Q.Q., Chase, H.R., Lee, B., Hwang, S., Trach, L., Park, E., Yoo, Y., Chung, T., Jackson, S.A., Patel, I.R., Sathyamoorthy, V., Pava-Ripoli, M., Kotewicz, M., Carter, L., Iversen, C., Pagotto, F., Stephan, R., Lehner, A., Fanning, S. and Grim, C.J. (2015) 'Development of a custom-designed, pan genomic DNA microarray to characterize strain-level diversity among Cronobacter spp'. Frontiers in Microbiology, 3 :36. [DOI] [Details]
De Majumdar, S., Yu, J., McAteer, S., Fookes, M., Llobet, E., Finn, S., Spence, S., Monaghan, A., Kissenpfennig, A., Ingram, R., Bengoechea, J., Gally, D.E., Fanning, S., Thomson, N.R., Elborn, J.S. and Schneiders, T. (2015) 'Elucidation of the RamA regulon in Klebsiella pneumoniae reveals a role in LPS regulation'. PLoS Pathogens, 11 :e1004766. [DOI] [Details]
Li, B., Zhao, J., Gan, X., Wang, J., Zhang, X., Cui, S., Hu, Y., Yan, S., Wang, J., Li, F., Fanning, S. and Xu, J. (2016) 'Emergence and diversity of Salmonella enterica serovar Indiana isolates with concurrent resistance to ciprofloxacin and cefotaxime from food-producing animals and patients in China'. Antimicrobial Agents and Chemotherapy, 60 :3365-3371. [DOI] [Details]
Ren, G., Ali, T., Chen, W., Han, D., Zhang, L., Gu, X., Zhang, S., Ding, L., Fanning, S. and Han, B. (2016) 'The role of selenium in insulin-like growth factor I receptor (IGF-IR) expression and regulation of apoptosis in mouse osteoblasts'. Chemosphere - Global Change Science, 144 :2158-2164. [DOI] [Details]
Clarke, D., Molinaro, S., Tyufin, A., Bolton, D., Fanning, S. and Kerry, J.P. (2016) 'Incorporation of commercially-derived antimicrobials into gelatin-based films and assessment of their antimicrobial activity and impact on physical film properties'. Food Control, 64 :202-211. [DOI] [Details]
Brennan, E., Martins,M., McCusker, M.P., Wang, J., Martins Alves, B., Hurley, D., El Garch, F., Woehrlé, F., Miossec, C., McGrath, L., Srikumar, S., Wall, P. and Fanning, S. (2016) 'Multidrug-resistant Escherichia coli in bovine animals, Europe'. Emerging Infectious Diseases, 22 :1650-1652. [DOI] [Details]
Mousavi, Z.E.; Condell, O.; Fanning, S.; Butler, F. (2016) 'Quaternary Ammonium Compounds (QACs) induced inactivation of Pseudomonas spp.: Effect of material surface'. Food and Bioproducts Processing: Transactions of the Institution of of Chemical Engineers, Part C, 98 :71-78. Available Online [DOI] [Details]
A. Agnew, J. Wang, S. Fanning, S. Bearhop and B. J. McMahon (2016) 'Insights into antimicrobial resistance among long distance migratory East Canadian High Arctic light-bellied Brent geese (Branta bernicla hrota)'. Irish Veterinary Journal, 69 :13. Available Online [DOI] [Details]
Nally, JE; Arent, Z; Bayles, DO; Gilmore, C; Regan, S; McDevitt, A; Yearsley, J; Fanning, S; McMahon, BJ; (2016) 'Emerging infectious disease implications of invasive mammalian species: the greater white-toothed shrew (Crocidura russula) is associated with a novel serovar of pathogenic Leptospira in Ireland'. PLoS Neglected Tropical Diseases, 10 (12):e0005174. Available Online [DOI] [Details]
Nally, J.E., Bayles, D.O., Hurley, D., Fanning, S., McMahon, B.J., & Arent, Z. (2016) 'Complete Genome Sequence of Leptospira alstonii Serovar Room22 Strain GWTS#1'. Genome Announcements, 6 :e01230-16. Available Online [DOI] [Details]
Nally J.E, Arent Z., Bayles D.O., Hornsby R.L., Gilmore C, Regan S., MacDevitt, A.D., Yearsley, J., Fanning, S. & McMahon, B.J. (2016) 'Emerging Infectious Disease Implications of Invasive Mammalian Species: The Greater White-Toothed Shrew (Crocidura russula) Is Associated With a Novel Serovar of Pathogenic Leptospira in Ireland'. PLoS Neglected Tropical Diseases, 10(12) :e0005174. Available Online [DOI] [Details]
Murphy, S., Fanning, S., Gaffney, M. and Burgess, C. (2016) 'Potential for transfer of Escherichia coli O157:H7, Listeria monocytogenes and Salmonella Senftenberg from contaminated food waste compost and anaerobic digestate liquid to lettuce plants'. Food Microbiology, 59 :7-13. [DOI] [Details]
Anvarian, A.H.P., Cao, Y., Srikumar, S., Fanning, S. and Jordan, K. (2016) 'Flow cytometric and 16S sequencing methodologies for monitoring the physiological status of the microbiome in powdered infant formula production'. Frontiers in Microbiology, 7 :968. [DOI] [Details]
Wang, J., Gibbons, J., McGrath, K., Bai, L., Li, F., Leonard, F., Stephan, R. and Fanning, S. (2016) 'Molecular characterization of blaESBL-producing Escherichia coli cultured from pig farms in Ireland'. Journal of Antimicrobial Chemotherapy, 71 :3062-3065. [DOI] [Details]
Bai, L., Hurley, D., Li, J., Meng, Q., Wang, J., Fanning, S. and Xiong, Y. (2016) 'Characterisation of multidrug-resistant Shiga toxin-producing Escherichia coli cultured from pigs in China: co-occurrence of extended spectrum b-lactamase and mcr-1 encoding genes on plasmids'. International Journal of Antimicrobial Agents, 48 :445-448. [DOI] [Details]
Deng, Z., Shahid, M., Zhang, L., Gao, J., Gu, X., Zhang, S., Zou, J, Fanning, S. and Han, B. (2016) 'An investigation of the innate immune response in bovine mammary epithelial cells challenged by Prototheca zopfii'. Mycopathologia, 181 :823-832. [DOI] [Details]
Gu, X., Han, D., Chen, W., Zhang, L., Lin, Q., Gao, J., Fanning, S. and Han, B. (2016) 'SIRT1-mediated FoxOs pathways protect against apoptosis by promoting autophagy in osteoblast-like MC3T3-E1 cells exposed to fluoride'. Oncotarget, . [DOI] [Details]
Gibbons, J.F., Boland, F., Egan, J., Fanning, S., Markey, B.K. and Leonard, F.C. (2016) 'Antimicrobial resistance of faecal Escherichia coli isolates from pig farms with different durations of in-feed antimicrobial use'. Zoonoses and Public Health, 63 :241-250. [DOI] [Details]
Allnut, T.R., Bradbury, M.I., Fanning, S., Chandry, P.S. and Fox, E. M. (2016) 'Draft genome sequences of 15 Listeria monocytogens serotype 1/2a, subgroup ST201'. Genome Announcements, 3 :e00935-16. [DOI] [Details]
Gunn, L., Finn, S., Hurley, D., Bai, L., Wall, E., Iversen, C., Threlfall, E.J. and Fanning, S. (2016) 'Molecular characterisation of Salmonella serovars Anatum and Ealing associated with two historical outbreaks, linked to contaminated powdered infant formula'. Frontiers in Microbiology, 7 :e1664. [DOI] [Details]
Yu, Z., Gunn, L., Brennan, E., Reid, R., Wall, P.G., O Gaora, P., Hurley, D., Bolton, D and Fanning, S. (2016) 'Complete genome sequence of Clostridium estertheticum DSM-8809, a microbe identified in spoiled vacuum packed beef'. Frontiers in Microbiology, 7 :e1764. [DOI] [Details]
Murphy, B.P., McCabe, E., Murphy, M., Buckley, J.F., Crowley, D., Fanning, S. and Duffy, G. (2016) 'Longitudinal study of two Irish dairy herds: low numbers of Shiga toxin-producing Escherichia coli super-shedders identified'. Frontiers in Microbiology, 7 :e1850. [DOI] [Details]
Nally, J.E., Arent, Z., Bayless, D.O., Hornsby, R.L., Gilmore, C., Regan, S.., McDevitt, A.D., Yearsley, J., Fanning, S. and McMahon, B.J. (2016) 'Emerging infectious disease implications of invasive mammalian species: the greater white-toothed shrew (Cocidura russula) is associated with a novel serovar of Leptospira in Ireland'. PLoS Neglected Tropical Diseases, 10 :e0005174. [DOI] [Details]
Fox, E., Allnutt, T., Bradbury, M., Fanning, S. and Chandry, P.S. (2016) 'Comparative genomics of the Listeria monocytogenes ST2014 subgroup'. Frontiers in Microbiology, 7 :2057. [DOI] [Details]
115. Reid, R., Fanning, S., Kerry, J., Whyte, P., Bolton, D. (2017) 'The fate of Salmonella Typhimurium and Escherichia coli O157 on hot boned versus conventionally chilled beef'. Meat Science, 126 :50-54. [Details]
Reid, R., Fanning, S., Whyte, P., Kerry, J., Bolton, D. (2017) 'An investigation of the effect of rapid slurry chilling on blown pack spoilage of vacuum packaged beef primals'. Letters in Applied Microbiology, 64 :177-181. [Details]
Reid, R., Fanning, S., Whyte, P., Kerry, J., Bolton, D. (2017) 'The microbiology of beef carcasses and primals during chilling and commercial storage'. Food Microbiology, 61 :50-57. [Details]
Lynch, H., Leonard, F.C., Walia, K., Lawlor, P.G., Duffy, G., Fanning, S., Markey, B.K., Brady, C., Gardiner, G.E., and Argüello, H. (2017) 'Investigation of in-feed organic acids as a low cost strategy to combat Salmonella in grower pigs'. Preventive Veterinary Medicine, 139 :50-57. [DOI] [Details]
Lynch, H., Leonard, F.C., Walia, K., Lawlor, P.G., Duffy, G., Fanning, S., Markey, B.K., Brady, C., Gardiner, G.E., and Argüello, H. (2017) 'Investigation of in-feed organic acids as a low cost strategy to combat Salmonella in grower pigs'. Preventive Veterinary Medicine, 139 :50-57. [DOI] [Details]
Dong, Y.P., Wang, W., Jiang, T., Xu, J., Han, C.H., Yan, S.F., Fanning, S., Li, Y., Ma, X.C., Zhang, D., Zhao, Y., Zeng, B. and Li F. (2017) 'Molecular and epidemiological characterisation of infant botulism in Beijing, China'. Biomedical and Environmental Sciences, 30 :460-464. [DOI] [Details]
Clarke D., Tyuftin A.A., Cruz-Romero M.C., Bolton D., Fanning, S., Pankaj, S.K., Bueno-Ferrer, C., Cullen, P.J. and Kerry, J.P. (2017) 'Surface attachment of active antimicrobial coatings onto conventional plastic-based laminates and performance assessment of these materials on the storage life of vacuum packaged beef sub-primals'. Food Microbiology, 62 :196-201. [DOI] [Details]
Bai, L., Wang, J., Hurley, D., Yu, Z., Wang, L., Chen, Q., Li, J., Li, F and Fanning, S. (2017) 'A novel disrupted mcr-1 gene and a lysogenized phage P1-like sequence detected from a large conjugative plasmid, cultured from a human atypical enteropathogenic Escherichia coli (aEPEC) recovered in China'. Journal of Antimicrobial Chemotherapy, 72 :1531-1533. [DOI] [Details]
Bai, L., Wang, L., Yang, X., Wang, J., Gan, X., Wang, W., Xu, J., Chen, Q., Lan, R., Fanning, S. and Li, F. (2017) 'Prevalence and characteristics of extended-spectrum b-lactamase genes in Escherichia coli isolated from diarrheic patients in China'. Frontiers in Microbiology, 13 :144. [DOI] [Details]
Leong, D., NicAogáin, K, Luque-Sastre, L, McManamon, O., Hunt, K., Alvarez-Ordóñez, Scollard, J., Schmalenberger, A., Fanning, S., O¿Byrne, C. and Jordan, K. (2017) 'A 3-year multi-food study of the presence and persistence of Listeria monocytogenes in 54 small food businesses in Ireland'. International Journal of Food Microbiology, 249 :18-26. [DOI] [Details]
Kennedy CA, Fanning S;Karczmarczyk M;Byrne B;Monaghan ¿¿;Bolton D;Sweeney T (2017) 'Characterizing the Multidrug Resistance of non-O157 Shiga Toxin-Producing Escherichia coli Isolates from Cattle Farms and Abattoirs'. Microbial drug resistance (Larchmont, N.Y.), . [DOI] [Details]
Kothary, M.H., Gopinath, G.R., Gangiredla, J., Rallabhandi, P.V., Harrison, L.M., Yan, Q.Q., Chase, H.R., Lee, B., Park, E., Yoo, Y., Chung, T., Finkelstein, S.B., Negrete, F.J., Patel, I.R., Carter, L., Sathyamoorthy, V., Fanning, S. and Tall, B.D. (2017) 'Analysis and characterisation of proteins associated with outer membrane vesicles secreted by Cronobacter spp'. Frontiers in Microbiology, 9 :134. [DOI] [Details]
Zurfluh, K., Bagutti, C., Brodmann, P., Alt, M., Schulze, J., Fanning, S., Stephan, R. and Nüesch-Inderbinen, M. (2017) 'Wastewater is a reservoir for clinically resistant carbapenemase and 16S rRNA methylase producing Enterobacteriaceae'. International Journal of Antimicrobial Agents, . [DOI] [Details]
Reid, R., Fanning, S., Whyte, P., Kerry, J., Bolton, D. (2017) 'The effects of hot versus cold boning of beef carcasses on bacterial growth and the risk of blown pack spoilage'. Meat Science, 125 :46-52. [Details]
Zintl, A,Mulcahy, G,de Wall, T,de Waele, V,Byrne, C,Clyne, M,Holden, N,Fanning, S (2006) 'An Irish perspective on Cryptosporidium'. Irish Vet J, 59 :495-500. [Details]
Molloy C, Cagney C, O'Brien S, Iversen C, Fanning S, Duffy G (2009) 'Surveillance and characterisation by pulsed-field gel electrophoresis of Cronobacter spp. in farming and domestic environments, food production animals and retail foods'. International Journal of Food Microbiology, 136 (2):198-203. [DOI] [Details]
LENAHAN, M and O'BRIEN, SB and BYRNE, C and RYAN, M and KENNEDY, CA and MCNAMARA, EB and FANNING, S and SHERIDAN, JJ and SWEENEY, T (2009) 'Molecular characterization of Irish E-coli O157:H7 isolates of human, bovine, ovine and porcine origin'. JOURNAL OF APPLIED MICROBIOLOGY, 107 (4):1340-1349. [DOI] [Details]
Molloy C, Cagney C, Fanning S, Duffy G (2010) 'Survival characteristics of Cronobacter spp. in model bovine gut and in the environment'. Foodborne Pathogens and Disease, 7 (6):671-675. [DOI] [Details]
Kennedy, CA and Lenahan, M and Ryan, M and Fanning, S and Sheridan, J and McNamara, E and Carroll, A and Sweeney, T (2010) 'Shiga toxin-producing Escherichia coli isolated from human and pig origin induce different gene expression profiles in human Caco-2 epithelial cells'. Livestock Science, 133 (1-3):189-191. [DOI] [Details]
Walsh D, Molloy C, Iversen C, Carroll J, Cagney C, Fanning S, Duffy G (2011) 'Survival characteristics of environmental and clinically derived strains of Cronobacter sakazakii in infant milk formula (IMF) and ingredients'. Journal of Applied Microbiology, 110 (3):697-703. [DOI] [Details]
Solomon K, Fanning S;McDermott S;Murray S;Scott L;Martin A;Skally M;Burns K;Kuijper E;Fitzpatrick F;Fenelon L;Kyne L (2011) 'PCR ribotype prevalence and molecular basis of macrolide-lincosamide-streptogramin B (MLSB) and fluoroquinolone resistance in Irish clinical Clostridium difficile isolates'. Journal of Antimicrobial Chemotherapy, 66 (9):1976-1982. [DOI] [Details]
Solomon K, Murray S;Scott L;McDermott S;Drudy D;Martin A;O'Donoghue C;Skally M;Burns K;Fenelon L;Fitzpatrick F;Kyne L;Fanning S (2011) 'An investigation of the subtype diversity of clinical isolates of Irish Clostridium difficile ribotypes 027 and 078 by repetitive-extragenic palindromic PCR'. Journal of Medical Microbiology, 60 (Pt 8):1080-1087. [DOI] [Details]
Monaghan, I,Byrne, B,Fanning, S,Sweeney, T,McDowell, D,Bolton, DJ (2011) 'Serotypes and Virulence Profiles of Non-O157 Shiga Toxin-Producing Escherichia coli Isolates from Bovine Farms'. Applied and Environmental Microbiology, 77 :8662-8668. [DOI] [Details]
O'Mahony, E,Buckley, JF,Bolton, D,Whyte, P,Fanning, S (2011) 'Molecular Epidemiology of Campylobacter Isolates from Poultry Production Units in Southern Ireland'. PLoS ONE, 6 . [DOI] [Details]
Rajtak, U,Boland, F,Leonard, N,Bolton, D,Fanning, S (2012) 'Roles of Diet and the Acid Tolerance Response in Survival of Common Salmonella Serotypes in Feces of Finishing Pigs'. Applied and Environmental Microbiology, 78 :110-119. [DOI] [Details]
Spengler, G,Rodrigues, L,Martins, A,Martins, M,McCusker, M,Cerca, P,Machado, L,Costa, SS,Ntokou, E,Couto, I,Viveiros, M,Fanning, S,Molnar, J,Amaral, L (2012) 'Genetic response of Salmonella enterica serotype Enteritidis to thioridazine rendering the organism resistant to the agent'. International Journal of Antimicrobial Agents, 39 :16-21. [DOI] [Details]
Cashman, O,Collins, PJ,Lennon, G,Cryan, B,Martella, V,Fanning, S,Staines, A,O'Shea, H (2012) 'Molecular characterization of group A rotaviruses detected in children with gastroenteritis in Ireland in 2006-2009'. Epidemiology and Infection, 140 :247-259. [DOI] [Details]
McDonnell, MJ,Rivas, L,Burgess, CM,Fanning, S,Duffy, G (2012) 'Inhibition of verocytotoxigenic Escherichia coli by antimicrobial peptides caseicin A and B and the factors affecting their antimicrobial activities'. International Journal of Food Microbiology, 153 :260-268. [DOI] [Details]
Haughton, PN,Lyng, JG,Cronin, DA,Morgan, DJ,Fanning, S,Whyte, P (2012) 'Efficacy of pulsed electric fields for the inactivation of indicator microorganisms and foodborne pathogens in liquids and raw chicken'. Food Control, 25 :131-135. [DOI] [Details]
Haughton, PN,Lyng, JG,Morgan, DJ,Cronin, DA,Noci, F,Fanning, S,Whyte, P (2012) 'An Evaluation of the Potential of High-Intensity Ultrasound for Improving the Microbial Safety of Poultry'. Food and Bioprocess Technology, 5 :992-998. [DOI] [Details]
Sheridan, A,Lenahan, M,Duffy, G,Fanning, S,Burgess, C (2012) 'The potential for biocide tolerance in Escherichia coli and its impact on the response to food processing stresses'. Food Control, 26 :98-106. [DOI] [Details]
Prendergast, DM,Grady, DO,McCann, A,McCabe, E,Fanning, S,Egan, J,Fanning, J,Gutierrez, M (2012) 'Application of PCR for rapid detection and serotyping of Salmonella spp. from porcine carcass swabs following enrichment in semi-solid agar'. Food Research International, 45 :993-999. [DOI] [Details]
Bolton, DJ,O'Neill, CJ,Fanning, S (2012) 'A Preliminary Study of Salmonella, Verocytotoxigenic Escherichia coli/Escherichia coli O157 and Campylobacter on Four Mixed Farms'. Zoonoses and Public Health, 59 :217-228. [DOI] [Details]
Condell, O,Iversen, C,Cooney, S,Power, KA,Walsh, C,Burgess, C,Fanning, S (2012) 'Efficacy of Biocides Used in the Modern Food Industry To Control Salmonella enterica, and Links between Biocide Tolerance and Resistance to Clinically Relevant Antimicrobial Compounds'. Applied and Environmental Microbiology, 78 :3087-3097. [DOI] [Details]
Walsh, C,Meade, J,Mcgill, K,Fanning, S (2012) 'THE BIODIVERSITY OF THERMODURIC BACTERIA ISOLATED FROM WHEY'. Journal of Food Safety, 32 :255-261. [DOI] [Details]
Karczmarczyk, M,Stephan, R,Hachler, H,Fanning, S (2012) 'Complete nucleotide sequence of pVQS1 containing a quinolone resistance determinant from Salmonella enterica serovar Virchow associated with foreign travel'. J ANTIMICROB CHEMOTH, 67 :1861-1864. [DOI] [Details]
Condell, O,Sheridan, A,Power, KA,Bonilla-Santiago, R,Sergeant, K,Renaut, J,Burgess, C,Fanning, S,Nally, JE (2012) 'Comparative proteomic analysis of Salmonella tolerance to the biocide active agent triclosan'. Proteomics, 75 :4505-4519. [DOI] [Details]
Haughton, PN,Lyng, J,Cronin, D,Fanning, S,Whyte, P (2012) 'Effect of crust freezing applied alone and in combination with ultraviolet light on the survival of Campylobacter on raw chicken'. Food Microbiology, 32 :147-151. [DOI] [Details]
Brengi, SP,O'Brien, SB,Pichel, M,Iversen, C,Arduino, M,Binsztein, N,Jensen, B,Pagotto, F,Ribot, EM,Stephan, R,Cernela, N,Cooper, K,Fanning, S (2012) 'Development and Validation of a PulseNet Standardized Protocol for Subtyping Isolates of Cronobacter Species'. Foodborne Pathogens and Disease, 9 :861-867. [DOI] [Details]
Monaghan, A,Byrne, B,Fanning, S,Sweeney, T,McDowell, D,Bolton, DJ (2012) 'Serotypes and virulotypes of non-O157 shiga-toxin producing Escherichia coli (STEC) on bovine hides and carcasses'. Food Microbiology, 32 :223-229. [DOI] [Details]
Ringwood, T,Murphy, BP,Drummond, N,Buckley, JF,Coveney, AP,Redmond, HP,Power, JP,Fanning, S,Prentice, MB (2012) 'Current evidence for human yersiniosis in Ireland'. European Journal of Clinical Microbiology and Infectious Diseases, 31 :2969-2981. [DOI] [Details]
McDonnell, MJ,Rivas, L,Burgess, CM,Fanning, S,Duffy, G (2012) 'Evaluation of Carvacrol for the Control of Escherichia coli O157 on Cattle Hide and Carcass Cuts'. Foodborne Pathogens and Disease, 9 :1049-1052. [DOI] [Details]
Haughton, PN,Grau, EG,Lyng, J,Cronin, D,Fanning, S,Whyte, P (2012) 'Susceptibility of Campylobacter to high intensity near ultraviolet/visible 395 +/- 5 nm light and its effectiveness for the decontamination of raw chicken and contact surfaces'. International Journal of Food Microbiology, 159 :267-273. [DOI] [Details]
Zhou, ZM,McCann, A,Litrup, E,Murphy, R,Cormican, M,Fanning, S,Brown, D,Guttman, DS,Brisse, S,Achtman, M (2013) 'Neutral Genomic Microevolution of a Recently Emerged Pathogen, Salmonella enterica Serovar Agona'. PLoS Genetics, 9 . [DOI] [Details]
Jarvis, KG,Yan, QQ,Grim, CJ,Power, KA,Franco, AA,Hu, L,Gopinath, G,Sathyamoorthy, V,Kotewicz, ML,Kothary, MH,Lee, C,Sadowski, J,Fanning, S,Tall, BD (2013) 'Identification and Characterization of Five New Molecular Serogroups of Cronobacter spp'. Foodborne Pathogens and Disease, 10 :343-352. [DOI] [Details]
De Majumdar, S,Veleba, M,Finn, S,Fanning, S,Schneiders, T (2013) 'Elucidating the Regulon of Multidrug Resistance Regulator RarA in Klebsiella pneumoniae'. Antimicrobial Agents and Chemotherapy, 57 :1603-1609. [DOI] [Details]
Pascu, ML,Danko, B,Martins, A,Jedlinszki, N,Alexandru, T,Nastasa, V,Boni, M,Militaru, A,Andrei, IR,Staicu, A,Hunyadi, A,Fanning, S,Amaral, L (2013) 'Exposure of Chlorpromazine to 266 nm Laser Beam Generates New Species with Antibacterial Properties: Contributions to Development of a New Process for Drug Discovery'. PLoS ONE, 8 . [DOI] [Details]
O'Leary, D,Mc Cabe, EM,McCusker, MP,Martins, M,Fanning, S,Duffy, G (2013) 'Microbiological study of biofilm formation in isolates of Salmonella enterica Typhimurium DT104 and DT104b cultured from the modern pork chain'. International Journal of Food Microbiology, 161 :36-43. [DOI] [Details]
Monaghan, A,Byrne, B,Fanning, S,Sweeney, T,McDowell, D,Bolton, DJ (2013) 'Serotypes and virulence profiles of atypical enteropathogenic Escherichia coli (EPEC) isolated from bovine farms and abattoirs'. Journal of Applied Microbiology, 114 :595-603. [DOI] [Details]
Gibbons, JF,Boland, F,Buckley, JF,Butler, F,Egan, J,Fanning, S,Markey, BK,Leonard, FC (2013) 'Influences on antimicrobial prescribing behaviour of veterinary practitioners in cattle practice in Ireland'. Veterinary Record, 172 :14. [DOI] [Details]
Beuchat, LR,Komitopoulou, E,Beckers, H,Betts, RP,Bourdichon, F,Fanning, S,Joosten, HM,Ter Kuile, BH (2013) 'Low-Water Activity Foods: Increased Concern as Vehicles of Foodborne Pathogens'. Journal of Food Protection, 76 :150-172. [DOI] [Details]
Bolton, D,Patriarchi, A,Fox, A,Fanning, S (2013) 'A study of the molecular basis of quinolone and macrolide resistance in a selection of Campylobacter isolates from intensive poultry flocks'. Food Control, 30 :222-226. [DOI] [Details]
Solomon K, Martin AJ;O'Donoghue C;Chen X;Fenelon L;Fanning S;Kelly CP;Kyne L (2013) 'Mortality in patients with Clostridium difficile infection correlates with host pro-inflammatory and humoral immune responses'. Journal of Medical Microbiology, 62 (Pt 9):1453-1460. [DOI] [Details]
Gibbons JF, Boland F, Buckley JF, Butler F, Egan J, Fanning S, Markey BK, Leonard FC. (2013) 'Influences on antimicrobial prescribing behaviour of veterinary practitioners in cattle practice in Ireland'. The Veterinary Record, . [Details]
Gibbons JF, Markey BK, Jahns H, Boland F, Abbott Y, Burns A, Egan J, Fanning S, Gutierrez M, Leonard FC. (2013) 'Investigation of the persistence and transmission of MRSA CC 5 in pigs following intra-nasal inoculation'. Veterinary Microbiology, . [Details]
Mousavi, ZE, Fanning, S, & Butler, F (2013) 'Effect of surface properties of different food contact materials on the efficiency of quaternary ammonium compounds residue recovery and persistence'. International Journal of Food Science and Technology, 48 (9):1791-1797. [Details]
Gibbons JF, Boland F, Buckley JF, Butler F, Egan J, Fanning S, Markey BK, Leonard FC. (2013) 'Influences on antimicrobial prescribing behaviour of veterinary practitioners in cattle practice in Ireland'. Veterinary Record, 172 (1):14. [Details]
Haughton, P.N., Lyng, J., Fanning, S., Whyte, P. (2013) 'Potential of a commercially available water acidification product for reducing Campylobacter in broilers prior to slaughter'. Poultry Science, 54 :319-324. [Details]
Power, K. and Wang, J. and Karczmarczyk, M. and Crowley, B. and Cotter, M. and Haughton, P. and Lynch, M. and Schaffer, K. and Fanning, S. (2014) 'Molecular analysis of OXA-48-Carrying conjugative IncL/M-Like plasmids in clinical isolates of klebsiella pneumoniae in Ireland'. Microbial Drug Resistance, 20 (4):270-274. Available Online [DOI] [Details]
Lenahan, M. and Sheridan, A. and Morris, D. and Duffy, G. and Fanning, S. and Burgess, C.M. (2014) 'Transcriptomic analysis of triclosan-susceptible and-tolerant escherichia coli O157:H19 in response to triclosan exposure'. Microbial Drug Resistance, 20 (2):91-103. Available Online [DOI] [Details]
Karczmarczyk, M. and Wang, J. and Leonard, N. and Fanning, S. (2014) 'Complete nucleotide sequence of a conjugative IncF plasmid from an Escherichia coli isolate of equine origin containing blaCMY-2 within a novel genetic context'. FEMS Microbiology Letters, 352 (1):123-127. Available Online [DOI] [Details]
Collins, P.J. and Mulherin, E. and Cashman, O. and Lennon, G. and Gunn, L. and O'Shea, H. and Fanning, S. (2014) 'Detection and characterisation of bovine rotavirus in Ireland from 2006-2008'. Irish Veterinary Journal, 67 (1). Available Online [DOI] [Details]
O'Shea, H. and Mulherin, E. and Matthijnssens, J. and McCusker, M.P. and Collins, P.J. and Cashman, O. and Gunn, L. and Beltman, M.E. and Fanning, S. (2014) 'Complete genomic sequence analyses of the first group A giraffe rotavirus reveals close evolutionary relationship with rotaviruses infecting other members of the Artiodactyla'. Veterinary Microbiology, 170 (1-2):151-156. Available Online [DOI] [Details]
Smith, S. and Wang, J. and Fanning, S. and McMahon, B.J. (2014) 'Antimicrobial resistant bacteria in wild mammals and birds: A coincidence or cause for concern?'. Irish Veterinary Journal, 67 (1). Available Online [DOI] [Details]
Lennon, G. and Reidy, N. and Collins, P.J. and Gunn, L. and Coyle, P.V. and Cryan, B. and Fanning, S. and O'Shea, H. (2014) 'A comparison of the efficiency of ELISA and selected primer sets to detect Norovirus isolates in southern Ireland over a four-year period (2002-2006): Variation in detection rates and evidence for continuing predominance of NoV GII.4 genotype'. Archives of Virology, 159 (7):1697-1705. Available Online [DOI] [Details]
Gibbons, J.F. and Boland, F. and Buckley, J.F. and Butler, F. and Egan, J. and Fanning, S. and Markey, B.K. and Leonard, F.C. (2014) 'Patterns of antimicrobial resistance in pathogenic Escherichia coli isolates from cases of calf enteritis during the spring-calving season'. Veterinary Microbiology, 170 (1-2):73-80. Available Online [DOI] [Details]
Tall, B.D. and Chen, Y. and Yan, Q. and Gopinath, G.R. and Grim, C.J. and Jarvis, K.G. and Fanning, S. and Lampel, K.A. (2014) 'Cronobacter: An emergent pathogen causing meningitis to neonates through their feeds'. Science Progress, 97 (2):154-172. Available Online [DOI] [Details]
Fox, E.M. and Solomon, K. and Moore, J.E. and Wall, P.G. and Fanning, S. (2014) 'Phylogenetic profiles of in-house microflora in drains at a food production facility: Comparison and biocontrol implications of listeria-positive and -negative bacterial populations'. Applied and Environmental Microbiology, 80 (11):3369-3374. Available Online [DOI] [Details]
Bullman, S. and Kearney, K. and O'Mahony, M. and Kelly, L. and Whyte, P. and Fanning, S. and Morgan, J.G. (2014) 'Identification and genetic characterization of a novel picornavirus from chickens'. Journal of General Virology, 95 (PART 5):1094-1103. Available Online [DOI] [Details]
Burns A, Shore AC;Brennan GI;Coleman DC;Egan J;Fanning S;Galligan MC;Gibbons JF;Gutierrez M;Malhotra-Kumar S;Markey BK;Sabirova JS;Wang J;Leonard FC (2014) 'A longitudinal study of Staphylococcus aureus colonization in pigs in Ireland'. Veterinary Microbiology, 174 (3-4):504-513. [DOI] [Details]
Gibbons JF, Boland F, Buckley JF, Butler F, Egan J, Fanning S, Markey BK, Leonard FC. (2014) 'Patterns of antimicrobial resistance in pathogenic Escherichia coli isolates from cases of calf enteritis during the spring-calving season'. Veterinary Microbiology, 170 :73-80. [Details]
Smith, S., Wang, J., Fanning, S. & McMahon, B.J. (2014) 'Antimicrobial resistant bacteria in wild mammals and birds: a coincidence or cause for concern?'. Irish Veterinary Journal, 67 :8. [DOI] [Details]
Bullman, S., Kearney, K., O¿Mahony, M., Kelly, L., Whyte, P., Fanning, S., Morgan, J.G. (2014) 'Identification and genetic characterisation of a novel picornavirus from chickens'. Journal of General Virology, 2014 May;95(Pt 5):1094-103. doi: 10.1099/vir.0.061085-0 . [Details]
Karczmarczyk M, Wang J, Leonard N, Fanning S. (2014) 'Complete nucleotide sequence of a conjugative IncF plasmid from an Escherichia coli isolate of equine origin containing blaCMY-2 within a novel genetic context'. FEMS Microbiol Letters, 352 (1):123-127. [Details]
Burns A., Shore A.C., Brennan G.I., Coleman D.C., Egan J., Fanning S., Galligan M.C., Gibbons J.F., Gutierrez M., Malhotra-Kumar S., Markey B.K., Sabirova J.S., Wang J., Leonard F.C. (2014) 'A longitudinal study of Staphylococcus aureus colonization in pigs in Ireland'. Veterinary Microbiology, 174 :504-513. [DOI] [Details]
Gibbons, J.F. and Boland, F. and Buckley, J.F. and Butler, F. and Egan, J. and Fanning, S. and Markey, B.K. and Leonard, F.C. (2014) 'Patterns of antimicrobial resistance in pathogenic Escherichia coli isolates from cases of calf enteritis during the spring-calving season'. Veterinary Microbiology, 170 (1-2):73-80. Available Online [DOI] [Details]
Mousavi, Z.E. and Kennedy, E. and Fanning, S. and Rice, J.H. and Butler, F. (2014) 'The effect of Quaternary Ammonium Compounds on the attachment of wild and adapted Pseudomonas putida strains to different contact materials used in the food sector'. Food Control, 42 :277-283. Available Online [DOI] [Details]
Fox, E.M., Wall, P.G. and Fanning, S. (2015) 'Control of Listeria species- food safety at a poultry production facility'. Food Microbiology, . [Details]
Périamé, M., Philippe, N., Condell, O., Fanning, S., Pagès, J.-M. and Davin-Regli, A. (2015) 'Phenotypic changes contributing to Enterobacter gergoviae biocide resistance'. Letters in Applied Microbiology, . [Details]
O¿Leary, D., McCabe, E.M., McCusker, M.P., Martins, M., Fanning, S. and Duffy, G. (2015) 'Acid environments affect biofilm formation and gene expression in isolates of Salmonella enterica Typhimurium DT104'. International Journal of Food Microbiology, . [Details]
Yan, Q., Wang, J., Cao, Y., Martins, M., Gopinath, G.R., Stephan. R., Lampel, K., Tall, B.D. and Fanning, S. (2015) 'Comparative genotypic and phenotypic analysis of Cronobacter species cultured from four powdered infant formula production facilities ¿ indication of patho-adaptation along the food chain'. Applied and Environmental Microbiology, . [Details]
Liu, G., Liu, Y., Ali, T., Ferreri, M., Gao, J., Chen, W., Yin, J., Su, J., Fanning, S. and Han, B. (2015) 'Molecular and phenotypic characterization of Aerococcus viridans associated with subclinical bovine mastitis'. PLoS ONE, . [Details]
Gunn, L., Collins, P.J., Fanning, S., McKillen J., Morgan, J., Staines, A. and O¿Shea, H. (2015) 'Detection and characterisation of bocavirus (genus Bocaparvoviradae) and gastroenteritis viruses from asymptomatic pigs in Ireland; detection of novel bocavirus strains'. Infection Ecology & Epidemiology, . [Details]
Carroll, D, Wang, J., Fanning, S. & McMahon, B.J. (2015) 'Antimicrobial resistance in wildlife: implications for public health'. Zoonoses and Public Health, 16 :534-542. [DOI] Link to full text [Details]
Carroll, D. and Wang, J. and Fanning, S. and Mcmahon, B.J. (2015) 'Antimicrobial Resistance in Wildlife: Implications for Public Health'. Zoonoses and Public Health, . Available Online [DOI] [Details]
McMahon, BJ, Wall, PG, Fanning, S & Fahey F (2015) 'Targets to increase food production: One Health implications'. Infection Ecology & Epidemiology, 5 :27708. [DOI] [Details]
Yan, Q. and Jarvis, K.G. and Chase, H.R. and Hébert, K. and Trach, L.H. and Lee, C. and Sadowski, J. and Lee, B. and Hwang, S. and Sathyamoorthy, V. and Mullane, N. and Pava-Ripoll, M. and Iversen, C. and Pagotto, F. and Fanning, S. and Tall, B.D. (2015) 'A proposed harmonized LPS molecular-subtyping scheme for Cronobacter species'. Food Microbiology, 50 :38-43. Available Online [DOI] [Details]
O'Leary, D. and McCabe, E.M. and McCusker, M.P. and Martins, M. and Fanning, S. and Duffy, G. (2015) 'Acid environments affect biofilm formation and gene expression in isolates of Salmonella enterica Typhimurium DT104'. International Journal of Food Microbiology, 206 :7-16. Available Online [DOI] [Details]
Finn, S., Rogers, L., Händler, K., McClure, P., Amézquita, A., Hinton, J.C.D. and Fanning, S. (2015) 'Exposure of Salmonella enterica serovar Typhimurium to three humectants used in the food industry induces different osmo-adaptation systems'. Applied Environmental Microbiology, . [Details]
Gibbons JF, Boland F, Egan J, Fanning S, Markey BK, Leonard FC (2016) 'Antimicrobial Resistance of Faecal Escherichia coli Isolates from Pig Farms with Different Durations of In-feed Antimicrobial Use'. Zoonoses and Public Health, 63 (3):241-250. [DOI] [Details]
Fanning, S,Whyte, P,O'Mahony, M; (2009) 'Essential veterinary education on the development of antimicrobial and antiparasitic resistance: consequences for animal health and food safety and the need for vigilance'. OIE Revue Scientifique et Technique, 28 :575-582. [Details]
77. Murphy, B.P., Drummond, N., Ringwood, T., O¿Sullivan, E., Buckley, J.F., Whyte, P., Prentice, M.B., Fanning, S. ; (2010) 'First Report: Yersinia enterocolitica recovered from canine tonsils'. Veterinary Microbiology, 146 :336-339. [Details]
Haughton, P.N.a b , Lyng, J.G.a , Morgan, D.J.a , Cronin, D.A.a , Noci, F.a , Fanning, S.a b , Whyte, P.a b ; (2010) 'An Evaluation of the Potential of High-Intensity Ultrasound for Improving the Microbial Safety of Poultry'. Food and Bioprocess Technology, :1-7. Available Online [DOI] [Details]
Breathnach, R.M., Fanning, S., Mulcahy, G., Bassett, H.F., Strobl, E., Jones, B.R.J; (2010) 'Cutaneous infiltrates and peripheral blood immune responses in dogs with ImR-LPP'. Veterinary Dermatology, 21 :383-392. [Details]
Duggan, S.J., Mannion, C., Prendergast, D.M., Leonard, N., Fanning, S., Gonzales-Barron, U., Egan, J., Butler, F., Duffy, G.; (2010) 'Tracking the Salmonella status of pigs and pork from lairage through the slaughter process in the Republic of Ireland'. Journal of Food Protection, 73 :2148-2160. [Details]
Breathnach, RM,Fanning, S,Mulcahy, G,Bassett, HF,Strobl, E,Jones, BR; (2010) 'Cutaneous infiltrates and peripheral blood immune responses in dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododermatitis'. Veterinary Dermatology, 21 :383-392. [DOI] [Details]
Collins, PJ,Martella, V,Sleator, RD,Fanning, S,O'Shea, H; (2010) 'Detection and characterisation of group A rotavirus in asymptomatic piglets in southern Ireland'. Archives of Virology, 155 :1247-1259. [DOI] [Details]
Burns, K,Skally, M,Solomon, K,Scott, L,McDermott, S,O'Flanagan, D,Fanning, S,Kyne, L,Fenelon, L,Fitzpatrick, F; (2010) 'Clostridium difficile Infection in the Republic of Ireland: Results of a 1-Month National Surveillance and Ribotyping Project, March 2009'. Infection Control and Hospital Epidemiology, 31 :1085-1087. [DOI] [Details]
Karczmarczyk, M,Martins, M,McCusker, M,Mattar, S,Amaral, L,Leonard, N,Aarestrup, FM,Fanning, S; (2010) 'Characterization of antimicrobial resistance in Salmonella enterica food and animal isolates from Colombia: identification of a qnrB19-mediated quinolone resistance marker in two novel serovars'. FEMS Microbiology Letters, 313 :10-19. [DOI] [Details]
Lenahan, M,Kelly, S,Fanning, S,Bolton, DJ; (2010) 'The effect of bovine diet on Salmonella survival in synthetic abomasal fluid'. Journal of Applied Microbiology, 109 :2060-2068. [DOI] [Details]
Duggan, SJ,Mannion, C,Prendergast, DM,Leonard, N,Fanning, S,Gonzales-Barron, U,Egan, J,Butler, F,Duffy, G; (2010) 'Tracking the Salmonella Status of Pigs and Pork from Lairage through the Slaughter Process in the Republic of Ireland'. Journal of Food Protection, 73 :2148-2160. [Details]
Murphy, BP,Drummond, N,Ringwood, T,O'Sullivan, E,Buckley, JF,Whyte, P,Prentice, MB,Fanning, S; (2010) 'First report: Yersinia enterocolitica recovered from canine tonsils'. Veterinary Microbiology, 146 :336-339. [DOI] [Details]
Cashman, O,Lennon, G,Sleator, RD,Power, E,Fanning, S,O'Shea, H; (2010) 'Changing profile of the bovine rotavirus G6 population in the south of Ireland from 2002 to 2009'. Veterinary Microbiology, 146 :238-244. [DOI] [Details]
Burns K, Skally M, Solomon K, Scott L, McDermott S, O'Flanagan D, Fanning S, Kyne L, Fenelon L, Fitzpatrick F; (2010) 'Clostridium difficile infection in the Republic of Ireland: results of a 1-month national surveillance and ribotyping project, March 2009'. Infection control and hospital epidemiology : the official journal of the Society of Hospital Epidemiologists of America, 31 (10):1085-1087. [DOI] [Details]
Monaghan, A.I., Byrne, B., Fanning, S., Sweeney, T., McDowell, D., Bolton, D.J. (2011) 'Serotypes and virulence profiles of non-O157 shiga toxin-producing Escherichia coli isolates from bovine farms'. Applied and Environmental Microbiology, 77 (4):8662-8668. [Details]
Patriarchi, A,Fox, A,Maunsell, B,Fanning, S,Bolton, D; (2011) 'Molecular Characterization and Environmental Mapping of Campylobacter Isolates in a Subset of Intensive Poultry Flocks in Ireland'. Foodborne Pathogens and Disease, 8 :99-108. [DOI] [Details]
Haughton, PN,Lyng, JG,Morgan, DJ,Cronin, DA,Fanning, S,Whyte, P; (2011) 'Efficacy of High-Intensity Pulsed Light for the Microbiological Decontamination of Chicken, Associated Packaging, and Contact Surfaces'. Foodborne Pathogens and Disease, 8 :109-117. [DOI] [Details]
Walsh, D,Molloy, C,Iversen, C,Carroll, J,Cagney, C,Fanning, S,Duffy, G; (2011) 'Survival characteristics of environmental and clinically derived strains of Cronobacter sakazakii in infant milk formula (IMF) and ingredients'. Journal of Applied Microbiology, 110 :697-703. [DOI] [Details]
Martins, M,McCusker, M,Amaral, L,Fanning, S; (2011) 'Mechanisms of Antibiotic Resistance in Salmonella: Efflux Pumps, Genetics, Quorum Sensing and Biofilm Formation'. Letters in Drug Design and Discovery, 8 :114-123. [Details]
Prendergast, DM,Lendrum, L,Pearce, R,Ball, C,McLernon, J,O'Grady, D,Scott, L,Fanning, S,Egan, J,Gutierrez, M; (2011) 'Verocytotoxigenic Escherichia coli O157 in beef and sheep abattoirs in Ireland and characterisation of isolates by Pulsed-Field Gel Electrophoresis and Multi-Locus Variable Number of Tandem Repeat Analysis'. International Journal of Food Microbiology, 144 :519-527. [DOI] [Details]
McCabe, EM,Burgess, CM,Walsh, D,O'Regan, E,McGuinness, S,Barry, T,Fanning, S,Duffy, G; (2011) 'Validation of DNA and RNA real-time assays for food analysis using the hilA gene of Salmonella enterica serovars'. Journal of Microbiological Methods, 84 :19-26. [DOI] [Details]
McCabe, EM,Burgess, CM,O'Regan, E,McGuinness, S,Barry, T,Fanning, S,Duffy, G; (2011) 'Development and evaluation of DNA and RNA real-time assays for food analysis using the hilA gene of Salmonella enterica subspecies enterica'. Food Microbiology, 28 :447-456. [DOI] [Details]
Kennedy, J,Nolan, A,Gibney, S,O'Brien, S,McMahon, MAS,McKenzie, K,Healy, B,McDowell, D,Fanning, S,Wall, PG; (2011) 'Determinants of cross-contamination during home food preparation'. British Food Journal, 113 :280-297. [DOI] [Details]
Martins, M,Viveiros, M,Couto, I,Costa, SS,Pacheco, T,Fanning, S,Pages, JM,Amaral, L; (2011) 'Identification of Efflux Pump-mediated Multidrug-resistant Bacteria by the Ethidium Bromide-agar Cartwheel Method'. In Vivo, 25 :171-178. [Details]
Haughton, PN,Lyng, JG,Cronin, DA,Morgan, DJ,Fanning, S,Whyte, P; (2011) 'Efficacy of UV Light Treatment for the Microbiological Decontamination of Chicken, Associated Packaging, and Contact Surfaces'. Journal of Food Protection, 74 :565-572. [DOI] [Details]
Bolton, DJ,Kelly, S,Lenahan, M,Fanning, S; (2011) 'In Vitro Studies on the Effect of pH and Volatile Fatty Acid Concentration, as Influenced by Diet, on the Survival of Inoculated Nonacid- and Acid-Adapted Salmonella in Bovine Rumen Fluid and Feces'. Foodborne Pathogens and Disease, 8 :609-614. [DOI] [Details]
Prendergast, DM,O'Grady, D,Fanning, S,Cormican, M,Delappe, N,Egan, J,Mannion, C,Fanning, J,Gutierrez, M; (2011) 'Application of multiple locus variable number of tandem repeat analysis (MLVA), phage typing and antimicrobial susceptibility testing to subtype Salmonella enterica serovar Typhimurium isolated from pig farms, pork slaughterhouses and meat producing plants in Ireland'. Food Microbiology, 28 :1087-1094. [DOI] [Details]
Amaral, L,Cerca, P,Spengler, G,Machado, L,Martins, A,Couto, I,Viveiros, M,Fanning, S,Pages, JM; (2011) 'Ethidium bromide efflux by Salmonella: modulation by metabolic energy, pH, ions and phenothiazines'. International Journal of Antimicrobial Agents, 38 :140-145. [DOI] [Details]
Rajtak, U,Leonard, N,Bolton, D,Fanning, S; (2011) 'A Real-Time Multiplex SYBR Green I Polymerase Chain Reaction Assay for Rapid Screening of Salmonella Serotypes Prevalent in the European Union'. Foodborne Pathogens and Disease, 8 :769-780. [DOI] [Details]
Bolton, DJ,Monaghan, A,Byrne, B,Fanning, S,Sweeney, T,McDowell, DA; (2011) 'Incidence and survival of non-O157 verocytotoxigenic Escherichia coli in soil'. Journal of Applied Microbiology, 111 :484-490. [DOI] [Details]
Holt, KE,Phan, MD,Baker, S,Duy, PT,Tran, VTN,Nair, S,Turner, AK,Walsh, C,Fanning, S,Farrell-Ward, S,Dutta, S,Kariuki, S,Weill, FX,Parkhill, J,Dougan, G,Wain, J; (2011) 'Emergence of a Globally Dominant IncHI1 Plasmid Type Associated with Multiple Drug Resistant Typhoid'. PLoS Neglected Tropical Diseases, 5 . [DOI] [Details]
Acke, E,Carroll, C,O'Leary, A,McGill, K,Kelly, L,Lawlor, A,Madden, RH,Moran, L,Scates, P,McNamara, E,Moore, JE,Jones, BR,Fanning, S,Whyte, P; (2011) 'Genotypic characterisation and cluster analysis of Campylobacter jejuni isolates from domestic pets, human clinical cases and retail food'. Irish Veterinary Journal, 64 . [DOI] [Details]
Arku, B,Fanning, S,Jordan, K; (2011) 'Flow cytometry to assess biochemical pathways in heat-stressed Cronobacter spp. (formerly Enterobacter sakazakii)'. Journal of Applied Microbiology, 111 :616-624. [DOI] [Details]
Kennedy, J,Gibney, S,Nolan, A,O'Brien, S,McMahon, MAS,McDowell, D,Fanning, S,Wall, PG; (2011) 'Identification of critical points during domestic food preparation: an observational study'. British Food Journal, 113 :766-783. [DOI] [Details]
Arku, B,Fanning, S,Jordan, K; (2011) 'Heat Adaptation and Survival of Cronobacter spp. (Formerly Enterobacter sakazakii)'. Foodborne Pathogens and Disease, 8 :975-981. [DOI] [Details]
Solomon, K,Fanning, S,McDermott, S,Murray, S,Scott, L,Martin, A,Skally, M,Burns, K,Kuijper, E,Fitzpatrick, F,Fenelon, L,Kyne, L; (2011) 'PCR ribotype prevalence and molecular basis of macrolide-lincosamide-streptogramin B (MLSB) and fluoroquinolone resistance in Irish clinical Clostridium difficile isolates'. Journal of Antimicrobial Chemotherapy, 66 :1976-1982. [DOI] [Details]
Karczmarczyk, M,Martins, M,Quinn, T,Leonard, N,Fanning, S; (2011) 'Mechanisms of Fluoroquinolone Resistance in Escherichia coli Isolates from Food-Producing Animals'. Applied and Environmental Microbiology, 77 :7113-7120. [DOI] [Details]
Karczmarczyk, M,Walsh, C,Slowey, R,Leonard, N,Fanning, S; (2011) 'Molecular Characterization of Multidrug-Resistant Escherichia coli Isolates from Irish Cattle Farms'. Applied and Environmental Microbiology, 77 :7121-7127. [DOI] [Details]
Karczmarczyk, M,Abbott, Y,Walsh, C,Leonard, N,Fanning, S; (2011) 'Characterization of Multidrug-Resistant Escherichia coli Isolates from Animals Presenting at a University Veterinary Hospital'. Applied and Environmental Microbiology, 77 :7104-7112. [DOI] [Details]
Acke, E., Carroll, C., O'Leary, A., McGill, K., Kelly, L., Lawlor, A., Madden, R.H., Moran, L., Scates, P., McNamara, E., Moore, J.E., Jones, B.R., Fanning, S., Whyte, P. ; (2011) 'Genotypic characterisation and cluster analysis of Campylobacter jejuni isolates from domestic pets, human clinical cases and retail food'. Irish Veterinary Journal, 64 :6. [Details]
Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A., Fanning, S., Whyte, P; (2011) 'Efficacy of high intensity pulsed light for the microbiological decontamination of poultry, associated packaging and contact surfaces'. Foodborne Pathogens and Disease, 8 :109-117. [Details]
Haughton, P.N., Lyng, J., Cronin, D.A., Morgan, D.J., Fanning, S., Whyte, P. ; (2011) 'Efficacy of UV light treatment for the microbiological decontamination of chicken, associated packaging and contact surfaces'. Journal of Food Protection, 74 :565-572. [Details]
Karczmarczyk, M., Walsh, C., Slowey, R., Leonard, N., Fanning, S.; (2011) 'Molecular characterisation of multidrug resistant (MDR) Escherichia coli isolates from Irish cattle farms'. Applied and Environmental Microbiology, 77 :7131-7127. [Details]
Karczmarczyk, M., Abbott, Y., Walsh, C., Leonard, N., Fanning, S. ; (2011) 'Characterisation of Multidrug Resistant Escherichia coli from Animals Presenting at a University Veterinary Hospital'. Applied and Environmental Microbiology, 77 :7104-7112. [Details]
Karczmarczyk, M., Martins, M., Quinn, T., Leonard, N., Fanning, S. ; (2011) 'Mechanisms of fluoroquinolone resistance in Escherichia coli isolates from food-producing animals'. Applied and Environmental Microbiology, 77 :7113-7120. [Details]
Rajtak, U., Leonard, N., Bolton, D., Fanning, S.; (2011) 'A Real-Time Multiplex SYBR Green I Polymerase Chain Reaction Assay for Rapid Screening of Salmonella Serotypes Prevalent in the European Union'. Foodborne Pathogens and Disease, 7 :69-80. [Details]
Solomon K, Murray S, Scott L, McDermott S, Drudy D, Martin A, O'Donoghue C, Skally M, Burns K, Fenelon L, Fitzpatrick F, Kyne L, Fanning S.; (2011) 'An investigation of the subtype diversity of clinical isolates of Irish Clostridium difficile ribotypes 027 and 078 by repetitive-extragenic palindromic PCR'. Journal of Medical Microbiology, 60 (Pt8):1080-1087. Available Online [Details]
O¿Mahony, E., Buckley, J.F., Bolton, D., Whyte, P., Fanning, S. (2011) 'Molecular epidemiology of Campylobacter isolates from poultry production units in Southern Ireland'. PLoS ONE, 6 :6(12): e28490. D. [Details]
Monaghan A, Byrne B, Fanning S, Sweeney T, McDowell D, Bolton DJ (2011) 'Serotypes and virulence profiles of non-O157 Shiga toxin-producing Escherichia coli isolates from bovine farms'. Applied and Environmental Microbiology, 77 (24):8662-8668. [DOI] [Details]
Kennedy J, Nolan A, Gibney S, O'Brien S, McMahon AS, McKenzie K, Healy B, McDowell D, Fanning S, Wall PG; (2011) 'Determinants of cross-contamination during home food preparatation'. British Food Journal, 113 (2):280-297. [Details]
Condell O, Iversen C, Cooney S, Power KA, Walsh C, Burgess C, Fanning S (2012) 'Efficacy of biocides used in the modern food industry to control salmonella enterica, and links between biocide tolerance and resistance to clinically relevant antimicrobial compounds'. Applied and Environmental Microbiology, 78 (9):3087-3097. [DOI] [Details]
Yan QQ, Condell O, Power K, Butler F, Tall BD, Fanning S (2012) 'Cronobacter species (formerly known as Enterobacter sakazakii) in powdered infant formula: a review of our current understanding of the biology of this bacterium'. Journal of Applied Microbiology, 113 (1):1-15. [DOI] [Details]
Haughton, P.N., Lyng, J.G., Cronin, D.A., Morgan, D.J., Fanning, S., Whyte, P. (2012) 'Efficacy of pulsed electric fields for the inactivation of indicator microorganisms and foodborne pathogens in liquids and raw chicken'. Food Control, 25 :131-135. [Details]
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P. (2012) 'Susceptibility of Campylobacter to high intensity near ultraviolet/visible 395±5nm light and its effectiveness for the decontamination of raw chicken and contact surfaces'. International Journal of Food Microbiology, 159 (3):267-273. [Details]
Haughton, P. N.; Lyng, J. G.; Morgan, D. J.; Cronin, D. A.; Noci, F.; Fanning, S.; Whyte, P. (2012) 'An Evaluation of the Potential of High-Intensity Ultrasound for Improving the Microbial Safety of Poultry'. Food and Bioprocess Technology, 5 (3):992-998. [Details]
Rajtak U, Boland F, Leonard N, Bolton D, Fanning S. (2012) 'Roles of diet and the acid tolerance response in survival of common Salmonella serotypes in feces of finishing pigs'. Applied and Environmental Microbiology, . [Details]
Monaghan, Á., Byrne, B., Fanning, S., Sweeney, T., McDowell, D., Bolton, D.J. (2012) 'Serotypes and virulotypes of non-O157 shiga-toxin producing Escherichia coli (STEC) on bovine hides and carcasses'. Food microbiology, 32 (2):223-229. [Details]
Haughton, P. N.; Lyng, J. G.; Cronin, D. A.; Morgan, D. J.; Fanning, S.; Whyte, P. (2012) 'Efficacy of pulsed electric fields for the inactivation of indicator microorganisms and foodborne pathogens in liquids and raw chicken'. Food Control, 25 (1):131-135. [Details]
Haughton, P.N., Lyng, J., Cronin, C., Fanning, S., Whyte, P. (2012) 'Effect of crust freezing applied alone and in combination with ultraviolet light on the survival of Campylobacter on raw chicken'. Food Microbiology, 32 :147-151. [Details]
Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A., Noci, F., Fanning, S., Whyte, P. ; (2012) 'An evaluation of the potential of high intensity ultrasound for improving the microbial safety of poultry'. Food and Bioprocess Technology, 5 (3):992-998. [Details]
Monaghan A, Byrne B, Fanning S, Sweeney T, McDowell D, Bolton DJ (2012) 'Serotypes and virulotypes of non-O157 shiga-toxin producing Escherichia coli (STEC) on bovine hides and carcasses'. Food Microbiology, 32 (2):223-229. [DOI] [Details]
Condell O, Sheridan ÿ, Power KA, Bonilla-Santiago R, Sergeant K, Renaut J, Burgess C, Fanning S, Nally JE (2012) 'Comparative proteomic analysis of Salmonella tolerance to the biocide active agent triclosan'. Proteomics, 75 (14):4505-4519. [DOI] [Details]
Haughton, P. N.,Lyng, J. G.,Morgan, D. J.,Cronin, D. A.,Noci, F.,Fanning, S.,Whyte, P.; (2012) 'An Evaluation of the Potential of High-Intensity Ultrasound for Improving the Microbial Safety of Poultry'. Food and Bioprocess Technology, 5 :992-998. Available Online [DOI] [Details]
Bolton DJ, Monaghan A, Byrne B, Fanning S, Sweeney T, McDowell DA; (2011) 'Incidence and survival of non-O157 verocytotoxigenic Escherichia coli in soil'. Journal of Applied Microbiology, . [DOI] [Details]
Kennedy, C. A.Kennedy, C. A.,Lenahan, M.Lenahan, M.,Ryan, M.Ryan, M.,Fanning, S.Fanning, S.,Sheridan, J.Sheridan, J.,McNamara, E.McNamara, E.,Carroll, A.Carroll, A.,Sweeney, T.Sweeney, T.; (2010) 'Shiga toxin-producing Escherichia coli isolated from human and pig origin induce different gene expression profiles in human Caco-2 epithelial cells'. Livestock Science, 133 :189-191. Available Online [DOI] [Details]
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O'Regan, E,Quinn, T,Frye, JG,Pages, JM,Porwollik, S,Fedorka-Cray, PJ,McClelland, M,Fanning, S; (2010) 'Fitness Costs and Stability of a High-Level Ciprofloxacin Resistance Phenotype in Salmonella enterica Serotype Enteritidis: Reduced Infectivity Associated with Decreased Expression of Salmonella Pathogenicity Island 1 Genes'. Antimicrobial Agents and Chemotherapy, 54 :367-374. [DOI] [Details]
Rivas, L,McDonnell, MJ,Burgess, CM,O'Brien, M,Navarro-Villa, A,Fanning, S,Duffy, G; (2010) 'Inhibition of verocytotoxigenic Escherichia coli in model broth and rumen systems by carvacrol and thymol'. Food Microbiology, 139 :70-78. [DOI] [Details]
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Karczmarczyk, M., Martins, M., McCusker, M., Mattar, S., Amaral, L., Leonard, N., Aarestrup, F.M., Fanning, S.; (2010) 'Characterization of antimicrobial resistance in Salmonella enterica food and animal isolates from Colombia: identification of a qnrB19-mediated quinolone resistance marker in two novel serovars'. FEMS Microbiol Letters, 313 :10-19. [Details]
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Toomey, N,Monaghan, A,Fanning, S,Bolton, DJ; (2009) 'Assessment of horizontal gene transfer in Lactic acid bacteria - A comparison of mating techniques with a view to optimising conjugation conditions'. Journal of Microbiological Methods, 77 (77):23-28. [DOI] [Details]
Acke, E,McGill, K,Golden, O,Jones, BR,Fanning, S,Whyte, P; (2009) 'A Comparison of Different Culture Methods for the Recovery of Campylobacter Species from Pets'. Journal of Public Health, 56 :490-495. [DOI] [Details]
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Scott L, McGee P, Walsh C, Fanning S, Sweeney T, Blanco J, Karczmarczyk M, Earley B, Leonard N, Sheridan JJ.; (2009) 'Detection of numerous verotoxigenic E. coli serotypes, with multiple antibiotic resistance from cattle faeces and soil'. Veterinary Microbiology, 134 (3-4):288-293. [Details]
Acke, E., McGill, K., Quinn, T., Jones, B.R., Fanning, S., Whyte, P. ; (2009) 'Antimicrobial resistance profiles and mechanisms of resistance in Campylobacter jejuni isolates from pets'. Foodborne Pathogens and Disease, 6 :705-710. [Details]
Zintl A, Mulcahy G, Proctor AF, Read C, De Waal T, Shanaghy N, Fanning S; (2009) 'The prevalence of Cryptosporidium species and subtypes in human faecal samples in Ireland'. Epidemiology and infection, 137 (2):270-277. [DOI] [Details]
Scott, L.,Mcgee, P.,Walsh, C.,Fanning, S.,Sweeney, T.,Blanco, J.,Karczmarczyk, M.,Earley, B.,Leonard, N.,Sheridan, J. J.; (2009) 'Detection of numerous verotoxigenic E. coli serotypes, with multiple antibiotic resistance from cattle faeces and soil'. Veterinary Microbiology, 134 (3-4):288-293. Available Online [Details]
Lenahan, M.,O'Brien, S. B.,Byrne, C.,Ryan, M.,Kennedy, C. A.,McNamara, E. B.,Fanning, S.,Sheridan, J. J.,Sweeney, T.; (2009) 'Molecular characterization of Irish E-coli O157:H7 isolates of human, bovine, ovine and porcine origin'. Journal of Applied Microbiology, 107 (4):1340-1349. Available Online [Details]
Acke, E., McGill, K., Golden, O., O'Malley, B., Jones, B.R., Fanning, S., Whyte, P; (2009) 'A comparison of different culture methods for the recovery of Campylobacter spp. in pets'. Zoonoses and Public Health, 56 :490-495. [Details]
Scott L, McGee P, Walsh C, Fanning S, Sweeney T, Blanco J, Karczmarczyk M, Earley B, Leonard N, Sheridan JJ; (2009) 'Detection of numerous verotoxigenic E. coli serotypes, with multiple antibiotic resistance from cattle faeces and soil'. Veterinary Microbiology, 134 (3-4):288-293. [DOI] [Details]
Dolan, A,Burgess, CM,Barry, TB,Fanning, S,Duffy, G; (2009) 'A novel quantitative reverse-transcription PCR (qRT-PCR) for the enumeration of total bacteria, using meat micro-flora as a model'. Journal of Microbiological Methods, 77 (77):1-7. [DOI] [Details]
McGill, K.,Kelly, L.,Madden, R. H.,Moran, L.,Carroll, C.,O'Leary, A.,Moore, J. E.,McNamara, E.,O'Mahony, M.,Fanning, S.,Whyte, P.; (2009) 'Comparison of disc diffusion and epsilometer (E-test) testing techniques to determine antimicrobial susceptibility of Campylobacter isolates of food and human clinical origin'. J Microbiol Methods, 79 (22):238-41238. Available Online [Details]
Zintl, A.,Proctor, A. F.,Read, C.,Dewaal, T.,Shanaghy, N.,Fanning, S.,Mulcahy, G.; (2009) 'The prevalence of Cryptosporidium species and subtypes in human faecal samples in Ireland'. Epidemiol Infect, 137 (22):270-7270. Available Online [Details]
Sweeney T, Lenahan M, O'Brien SB, Byrne C, Ryan M, Kennedy CA, McNamara EB, Fanning S, Sheridan JJ, ; (2009) 'Molecular characterization of Irish E. coli O157:H7 isolates of human, bovine, ovine and porcine origin'. Journal of applied microbiology, 107 (4):1340-1349. [DOI] [Details]
Acke, E.,McGill, K.,Golden, O.,Jones, B. R.,Fanning, S.,Whyte, P.; (2009) 'Prevalence of thermophilic Campylobacter species in household cats and dogs in Ireland'. Vet Rec, 164 (22):44-744. Available Online [Details]
O'Brien, S.,Healy, B.,Negredo, C.,Anderson, W.,Fanning, S.,Iversen, C.; (2009) 'Prevalence of Cronobacter species (Enterobacter sakazakii) in follow-on infant formulae and infant drinks'. Lett Appl Microbiol, 48 (55):536-41536. Available Online [Details]
Acke, E.,McGill, K.,Golden, O.,Jones, B. R.,Fanning, S.,Whyte, P.; (2009) 'A comparison of different culture methods for the recovery of Campylobacter species from pets'. Zoonoses Public Health, 56 (9-109-10):490-5490. Available Online [Details]
Acke, E., McGill, K., Golden, O., Jones, B.R., Fanning, S., Whyte, P. ; (2009) 'Prevalence of thermophilic Campylobacter0 species in household pets in Ireland. '. The Veterinary Record, 164 :44-47. [Details]
O'Brien, S.,Healy, B.,Negredo, C.,Fanning, S.,Iversen, C.; (2009) 'Evaluation of a new one-step enrichment in conjunction with a chromogenic medium for the detection of Cronobacter spp. (Enterobacter sakazakii) in powdered infant formula'. J Food Prot, 72 (77):1472-51472. Available Online [Details]
O'Regan, E,Quinn, T,Pages, JM,McCusker, M,Piddock, L,Fanning, S; (2009) 'Multiple Regulatory Pathways Associated with High-Level Ciprofloxacin and Multidrug Resistance in Salmonella enterica Serovar Enteritidis: Involvement of ramA and Other Global Regulators'. Antimicrobial Agents and Chemotherapy, 53 :1080-1087. [DOI] [Details]
Scott, L,Mcgee, P,Walsh, C,Fanning, S,Sweeney, T,Blanco, J,Karczmarczyk, M,Earley, B,Leonard, N,Sheridan, JJ; (2009) 'Detection of numerous verotoxigenic E. coli serotypes, with multiple antibiotic resistance from cattle faeces and soil'. Veterinary Microbiology, 134 :288-293. [DOI] [Details]
El-Sharoud, WM,O'Brien, S,Negredo, C,Iversen, C,Fanning, S,Healy, B; (2009) 'Characterization of Cronobacter recovered from dried milk and related products'. BMC Microbiology, 9 . [DOI] [Details]
O'Brien, S,Healy, B,Negredo, C,Anderson, W,Fanning, S,Iversen, C; (2009) 'Prevalence of Cronobacter species (Enterobacter sakazakii) in follow-on infant formulae and infant drinks'. Letters in Applied Microbiology, 48 :536-541. [DOI] [Details]
Almeida, C,Azevedo, NF,Iversen, C,Fanning, S,Keevil, CW,Vieira, MJ; (2009) 'Development and Application of a Novel Peptide Nucleic Acid Probe for the Specific Detection of Cronobacter Genomospecies (Enterobacter sakazakii) in Powdered Infant Formula'. Applied and Environmental Microbiology, 75 :2925-2930. [DOI] [Details]
Toomey, N,Monaghan, A,Fanning, S,Bolton, D; (2009) 'Transfer of Antibiotic Resistance Marker Genes between Lactic Acid Bacteria in Model Rumen and Plant Environments'. Applied and Environmental Microbiology, 75 :3146-3152. [DOI] [Details]
O'Brien, S,Healy, B,Negredo, C,Fanning, S,Iversen, C; (2009) 'Evaluation of a New One-Step Enrichment in Conjunction with a Chromogenic Medium for the Detection of Cronobacter spp. (Enterobacter sakazakii) in Powdered Infant Formula'. Journal of Food Protection, 72 :1472-1475. [Details]
Patriarchi, A,Maunsell, B,O'Mahony, E,Fox, A,Fanning, S,Buckley, J,Bolton, DJ; (2009) 'Prevalence of Campylobacter spp. in a subset of intensive poultry flocks in Ireland'. Letters in Applied Microbiology, 49 :305-310. [DOI] [Details]
Lenahan, M,O'Brien, SB,Byrne, C,Ryan, M,Kennedy, CA,McNamara, EB,Fanning, S,Sheridan, JJ,Sweeney, T; (2009) 'Molecular characterization of Irish E-coli O157:H7 isolates of human, bovine, ovine and porcine origin'. Journal of Applied Microbiology, 107 :1340-1349. [DOI] [Details]
Toomey, N,Monaghan, A,Fanning, S,Bolton, DJ; (2009) 'Assessment of Antimicrobial Resistance Transfer Between Lactic Acid Bacteria and Potential Foodborne Pathogens Using In Vitro Methods and Mating in a Food Matrix'. Food, 6 :925-933. [DOI] [Details]
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Martins, A,Iversen, C,Rodrigues, L,Spengler, G,Ramos, J,Kern, WV,Couto, I,Viveiros, M,Fanning, S,Pages, JM,Amaral, L; (2009) 'An AcrAB-mediated multidrug-resistant phenotype is maintained following restoration of wild-type activities by efflux pump genes and their regulators'. International Journal of Antimicrobial Agents, 34 :602-604. [DOI] [Details]
Acke, E,McGill, K,Quinn, T,Jones, BR,Fanning, S,Whyte, P; (2009) 'Antimicrobial Resistance Profiles and Mechanisms of Resistance in Campylobacter jejuni Isolates from Pets'. Food, 6 :705-710. [DOI] [Details]
Acke, E,McGill, K,Golden, O,Jones, BR,Fanning, S,Whyte, P; (2009) 'Prevalence of thermophilic Campylobacter species in household cats and dogs in Ireland'. Veterinary Record, 164 :44-47. [Details]
Zintl, A,Proctor, AF,Read, C,Dewaal, T,Shanaghy, N,Fanning, S,Mulcahy, G; (2009) 'The prevalence of Cryptosporidium species and subtypes in human faecal samples in Ireland'. Epidemiology and Infection, 137 :270-277. [DOI] [Details]
Lenahan, M.,O'Brien, S. B.,Byrne, C.,Ryan, M.,Kennedy, C. A.,McNamara, E. B.,Fanning, S.,Sheridan, J. J.,Sweeney, T.; (2009) 'Molecular characterization of Irish E. coli O157:H7 isolates of human, bovine, ovine and porcine origin'. J Appl Microbiol, 107 (44):1340-91340. Available Online [Details]
Breathnach, R. M.,Fanning, S.,Mulcahy, G.,Bassett, H. F.,Strobl, E.,Jones, B. R.; (2009) 'Cutaneous infiltrates and peripheral blood immune responses in dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododermatitis'. Vet Dermatol, . Available Online [Details]
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Mullane, NR,Ryan, M,Iversen, C,Murphy, M,O'Gaora, P,Quinn, T,Whyte, P,Wall, PG,Fanning, S; (2008) 'Development of multiple-locus variable-number tandem-repeat analysis for the molecular subtyping of Enterobacter sakazakii'. Applied and Environmental Microbiology, 74 (NA):1223-1231. [DOI] [Details]
Cashman, W,Buckley, J,Quigley, T,Fanning, S,More, S,Egan, J,Berry, D,Grant, I,O' Farrell, K; (2008) 'Risk factors for the introduction and within-herd transmission of Mycobacterium avium subspecies paratuberculosis (MAP) infection off 59 Irish dairy herds'. VET J, 61 :464-467. Link to full text [Details]
Mannion, C,Egan, J,Lynch, BP,Fanning, S,Leonard, N; (2008) 'An investigation into the efficacy of washing trucks following the transportation of pigs - A Salmonella perspective'. Food, 5 :261-271. [DOI] [Details]
Mullane, N,O'Gaora, P,Nally, JE,Iversen, C,Whyte, P,Wall, PG,Fanning, S; (2008) 'Molecular analysis of the Enterobacter sakazakii O-antigen gene locus'. ASABE Annual International Meeting, 74 :3783-3794. [DOI] [Details]
Murphy, M,Minihan, D,Buckley, JF,O'Mahony, M,Whyte, P,Fanning, S; (2008) 'Multiple-locus variable number of tandem repeat analysis (MLVA) of Irish verocytotoxigenic Escherichia coli O157 from feedlot cattle: uncovering strain dissemination routes'. Veterinary Research, 4 . [DOI] [Details]
Murphy, M., Minihan, D., Buckley, J. F., O'Mahony, M., Whyte, P., Fanning, S., ; (2008) 'Multiple-locus variable number of tandem repeat analysis (MLVA) of Irish verocytotoxigenic Escherichia coli O157 from feedlot cattle: uncovering strain dissemination routes'. BMC Veterinary Research, 4 . [Details]
Mullane, N., O'Gaora, P., Nally, J. E., Iversen, C., Whyte, P., Wall, P. G., Fanning, S., ; (2008) 'Molecular analysis of the Enterobacter sakazakii O-antigen gene locus'. Applied and Environmental Microbiology, 74 (12):3783-3794. [Details]
O'Regan, E,McCabe, E,Burgess, C,McGuinness, S,Barry, T,Duffy, G,Whyte, P,Fanning, S; (2008) 'Development of a real-time multiplex PCR assay for the detection of multiple Salmonella serotypes in chicken samples'. BMC Microbiology, 8 (NA). [DOI] [Details]
Breathnach, R. M., Fanning, S., Mulcahy, G., Bassett, H. F., Jones, B. R., ; (2008) 'Canine pododermatitis and idiopathic disease'. Veterinary Journal, 176 (2):146-157. [Details]
Breathnach, R. M., Fanning, S., Mulcahy, G., Bassett, H. F., Jones, B. R., ; (2008) 'A study of dendritic cell and MHC class II expression in dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododerniatitis'. Veterinary Journal, 177 (3):352-359. [Details]
Mullane, N,Healy, B,Meade, J,Whyte, P,Wall, PG,Fanning, S; (2008) 'Dissemination of Cronobacter spp. (Enterobacter sakazakii) in a powdered milk protein manufacturing facility'. Applied and Environmental Microbiology, 74 (NA):5913-5917. [DOI] [Details]
Healy, B,Mullane, N,Collin, V,Mailler, S,Iversen, C,Chatellier, S,Storrs, M,Fanning, S; (2008) 'Evaluation of an automated repetitive sequence-based PCR system for Subtyping Enterobacter sakazakii'. Journal of Food Protection, 71 :1372-1378. [Details]
Healy, B., Mullane, N., Collin, V., Mailler, S., Iversen, C., Chatellier, S., Storrs, M., Fanning, S., ; (2008) 'Evaluation of an automated repetitive sequence-based PCR system for Subtyping Enterobacter sakazakii'. Journal of Food Protection, 71 (7):1372-1378. Available Online [DOI] [Details]
Arku, B,Mullane, N,Fox, E,Fanning, SA,Jordan, K; (2008) 'Enterobacter sakazakii survives spray drying'. International Journal of Dairy Technology, 61 :102-108. [Details]
Breathnach, RM,Fanning, S,Mulcahy, G,Bassett, HF,Jones, BR; (2008) 'A study of dendritic cell and MHC class II expression in dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododerniatitis'. VET J, 177 :352-359. [DOI] [Details]
Murphy, BP,Buckley, JF,O'Connor, EM,Gilroy, D,Fanning, S; (2008) 'Comparison of Salmonella species recovered from Irish liquid milk production holdings with temporal clinical veterinary isolates'. INT J HYG ENVIR HEAL, 211 :283-291. [DOI] [Details]
Prendergast, DM,Duggan, SJ,Fanning, S,Cormican, M,Gonzales-Barron, U,Butler, F,Duffy, G; (2008) 'Prevalence and numbers of Salmonella spp. and Enterobacteriaceae on pork cuts in abattoirs in the Republic of Ireland'. Journal of Applied Microbiology, 105 :1209-1219. Available Online [DOI] [Details]
Mulherin, E,Bryan, J,Beltman, M,O'Grady, L,Pidgeon, E,Garon, L,Lloyd, A,Bainbridge, J,O'Shea, H,Whyte, P,Fanning, S; (2008) 'Molecular characterisation of a bovine-like rotavirus detected from a giraffe'. Veterinary Research, 4 . [DOI] [Details]
Lennon, G,Reidy, N,Cryan, B,Fanning, S,O'Shea, H; (2008) 'Changing profile of rotavirus in Ireland: Predominance of P[8] and emergence of P[6] and P[9] in mixed infections'. Virology, 80 :524-530. [DOI] [Details]
Zintl A, Proctor AF, Read C, Dewaal T, Shanaghy N, Fanning S, Mulcahy G; (2008) 'The prevalence of Cryptosporidium species and subtypes in human faecal samples in Ireland'. Epidemiology and Infection, :1-8. [DOI] [Details]
Prendergast, D. M.,Duggan, S. J.,Fanning, S.,Cormican, M.,Gonzales-Barron, U.,Butler, F.,Duffy, G.; (2008) 'Prevalence and numbers of Salmonella spp. and Enterobacteriaceae on pork cuts in abattoirs in the Republic of Ireland'. Journal of Applied Microbiology, 105 (4):1209-1219. Available Online [Details]
Iversen, C.,Mullane, N.,McCardell, B.,Tall, B. D.,Lehner, A.,Fanning, S.,Stephan, R.,Joosten, H.; (2008) 'Cronobacter gen. nov., a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen. nov., comb. nov., Cronobacter malonaticus sp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov., Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. lausannensis subsp. nov. and Cronobacter dublinensis subsp. lactaridi subsp. nov'. International Journal of Systematic and Evolutionary Microbiology, 58 (Pt 6):1442-1447. Available Online [DOI] [Details]
Mannion C, Egan J, Lynch BP, Fanning S, Leonard N.; (2008) 'An investigation into the efficacy of washing trucks following the transportation of pigs--a salmonella perspective'. Foodborne Pathogens and Disease, 5 (3):261-271. [Details]
Mullane, N. R., Ryan, M., Iversen, C., Murphy, M., O'Gaora, P., Quinn, T., Whyte, P., Wall, P. G., Fanning, S., ; (2008) 'Development of multiple-locus variable-number tandem-repeat analysis for the molecular subtyping of Enterobacter sakazakii'. Applied and Environmental Microbiology, 74 (4):1223-1231. [Details]
Cashman, W., Buckley, J., Quigley T., Fanning, S., More, S., Egan, J., Berry, D., Grant, I. and O'Farrell, K.; (2008) 'Risk factors for introduction and within-herd transmission of Mycobacterium avium subspecies paratuberculosis (MAP) infection on 59 Irish dairy herds'. Irish Veterinary Journal, 61 (7):464-467. [DOI] [Details]
Mulherin, E., Bryan, J., Beltman, M., O'Grady, l., Pidgeon, E., Garon, L., Lloyd, A., Bainbridge, J., O'Shea, H., Whyte, P., Fanning, S.; (2008) 'Molecular characterisation of a bovine-like rotavirus detected from a giraffe'. BMC Veterinary Research, . [Details]
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Prendergast, D., Duggan, S., Gonzales Barron, U., Fanning, S., Butler, F., Duffy, G. ; (2008) 'Surveillance and characterization of Salmonella spp. and Enterobacteriaceae on retail pork in the Republic of Ireland'. International Journal of Food Microbiology, . [Details]
Prendergast, D., Duggan, S., Gonzales Barron, U., Fanning, S., Butler, F., Cormican, M., and Duffy, G. ; (2008) 'Prevalence, numbers and characteristics of Salmonella spp. on Irish retail pork'. International Journal of Food Microbiology, 131 (2-3):233-239. [Details]
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Mulcahy G, Zintl A, Proctor AF, Read C, Dewaal T, Shanaghy N, Fanning S, ; (2008) 'The prevalence of Cryptosporidium species and subtypes in human faecal samples in Ireland'. Epidemiology and Infection, (NA):1-8. [DOI] [Details]
Mullane, N., O'Gaora, P., Nally, J. E., Iversen, C., Whyte, P., Wall, P. G., Fanning, S., ; (2008) 'Molecular analysis of the Enterobacter sakazakii O-antigen gene locus'. Applied and Environmental Microbiology, 74 (12):3783-3794. [DOI] [Details]
Mullane, NR; Whyte, P; Wall, PG; Quinn, T; Fanning, S; ; (2007) 'Application of pulsed-field gel electrophoresis to characterise and trace the prevalence of Enterobacter sakazakii in an infant formula processing facility'. International Journal of Food Microbiology, 116 :73-81. [Details]
Iversen, C, Lehner, A, Mullane, N, Bidlas, E, Cleenwerck, I, Marugg, J, Fanning, S, Stephan, R, Joosten, H, ; (2007) 'The taxonomy of Enterobacter sakazakii: proposal of a new genus Cronobacter gen. nov and descriptions of Cronobacter sakazakii comb. nov Cronobacter sakazakii subsp sakazakii, comb. nov., Cronobacter sakazakii subsp malonaticus subsp nov., Cronobacter tur'. BMC Evolutionary Biology, 7 :64. Available Online [DOI] [Details]
Murphy, M, Corcoran, D, Buckley, JF, OMahony, M, Whyte, P, Fanning, S, ; (2007) 'Development and application of Multiple-Locus Variable Number of tandem repeat Analysis (MLVA) to subtype a collection of Listeria monocytogenes'. International Journal of Food Microbiology, 115 :187-194. [Details]
Mullane, NR, Whyte, P, Wall, PG, Quinn, T, Fanning, S, ; (2007) 'Application of pulsed-field gel electrophoresis to characterise and trace the prevalence of Enterobacter sakazakii in an infant formula processing facility'. International Journal of Food Microbiology, 116 :73-81. [Details]
Murphy, M, Carroll, A, Walsh, C, Whyte, P, OMahony, M, Anderson, W, McNamara, E, Fanning, S, ; (2007) 'Development and assessment of a rapid method to detect Escherichia coli O26, O111 and O157 in retail minced beef'. INT J HYG ENVIR HEAL, 210 :155-161. [Details]
Drudy, D, Fanning, S, Kyne, L, ; (2007) 'Toxin A-negative, toxin B-positive Clostridium difficile'. International Journal of Infectious Diseases, 11 :5-10. [Details]
Drudy, D, Harnedy, N, Fanning, S, OMahony, R, Kyne, L, ; (2007) 'Isolation and characterisation of toxin A-negative, toxin B-positive Clostridium difficile in Dublin, Ireland'. Clinical Microbiology and Infection, 13 :298-304. [Details]
Drudy, D, Kyne, L, OMahony, R, Fanning, S, ; (2007) 'gyrA mutations in fluoroquinolone-resistant Clostridium difficile PCR-027'. Emerging Infectious Diseases, 13 :504-505. [Details]
Drudy, D, Harnedy, N, Fanning, S, O'Mahony, R, Kyne, L, ; (2007) 'Isolation and characterisation of toxin A-negative, toxin B-positive Clostridium difficile in Dublin, Ireland'. Clinical Microbiology and Infection, 13 (3):298-304. [Details]
Drudy, D, Fanning, S, Kyne, L, ; (2007) 'Toxin A-negative, toxin B-positive Clostridium difficile'. International Journal of Infectious Diseases, 11 (1):5-10. [Details]
Murphy, M,Buckley, JF,Whyte, P,O'Mahony, M,Anderson, W,Wall, PG,Fanning, S; (2007) 'Surveillance of dairy production holdings supplying raw milk to the farmhouse cheese sector for Escherichia coli O157, O26 and O111'. Public Health, 54 :358-365. [DOI] [Details]
Iversen, C,Lehner, A,Mullane, N,Marugg, J,Fanning, S,Stephan, R,Joosten, H; (2007) 'Identification of Cronobacter spp. (Enterobacter sakazakii)'. Journal of Clinical Microbiology, 45 :3814-3816. [DOI] [Details]
Zintl, A,Neville, D,Maguire, D,Fanning, S,Mulcahy, G,Smith, HV,De Waal, T; (2007) 'Prevalence of Cryptosporidium species in intensively farmed pigs in Ireland'. Parasitology, 134 (NA):1575-1582. [DOI] [Details]
Drudy, D,Harnedy, N,Fanning, S,Hannan, M,Kyne, L; (2007) 'Emergence and control of fluoroquinolone-resistant, toxin a-negative, toxin B-Positive Clostridium difficile'. Journal of Epidemiology, 28 :932-940. [DOI] [Details]
Quinn, T,Bolla, JM,Pages, JM,Fanning, S; (2007) 'Antibiotic-resistant Campylobacter: could efflux pump inhibitors control infection?'. J ANTIMICROB CHEMOTH, 59 :1230-1236. [DOI] [Details]
Iversen, C,Lehner, A,Mullane, N,Bidlas, E,Cleenwerck, I,Marugg, J,Fanning, S,Stephan, R,Joosten, H; (2007) 'The taxonomy of Enterobacter sakazakii: proposal of a new genus Cronobacter gen. nov and descriptions of Cronobacter sakazakii comb. nov Cronobacter sakazakii subsp sakazakii, comb. nov., Cronobacter sakazakii subsp malonaticus subsp nov., Cronobacter turicensis sp nov., Cronobacter muytjensii sp nov., Cronobacter dublinensis sp nov and Cronobacter genomospecies I'. BMC Evolutionary Biology, 7 . [DOI] [Details]
Mullane, NR,Whyte, P,Wall, PG,Quinn, T,Fanning, S; (2007) 'Application of pulsed-field gel electrophoresis to characterise and trace the prevalence of Enterobacter sakazakii in an infant formula processing facility'. Food Microbiology, 116 (NA):73-81. [DOI] [Details]
Murphy, M,Corcoran, D,Buckley, JF,O'Mahony, M,Whyte, P,Fanning, S; (2007) 'Development and application of Multiple-Locus Variable Number of tandem repeat Analysis (MLVA) to subtype a collection of Listeria monocytogenes'. Food Microbiology, 115 :187-194. [DOI] [Details]
Murphy, M,Carroll, A,Walsh, C,Whyte, P,O'Mahony, M,Anderson, W,McNamara, E,Fanning, S; (2007) 'Development and assessment of a rapid method to detect Escherichia coli O26, O111 and O157 in retail minced beef'. INT J HYG ENVIR HEAL, 210 :155-161. [DOI] [Details]
Drudy, D,Harnedy, N,Fanning, S,O'Mahony, R,Kyne, L; (2007) 'Isolation and characterisation of toxin A-negative, toxin B-positive Clostridium difficile in Dublin, Ireland'. Clinical Microbiology and Infection, 13 :298-304. [DOI] [Details]
Drudy, D,Fanning, S,Kyne, L; (2007) 'Toxin A-negative, toxin B-positive Clostridium difficile'. Journal of Infectious Diseases, 11 :5-10. [DOI] [Details]
Murphy, BP,O'Mahony, R,Buckley, JF,Shine, P,Boyd, EF,Gilroy, D,Fanning, S; (2007) 'Investigation of a global collection of nontyphoidal Salmonella of various serotypes cultured between 1953 and 2004 for the presence of class 1 integrons'. FEMS Microbiology Letters, 266 :170-176. [DOI] [Details]
Fanning S, Mullane NR, Iversen C, Healy B, Walsh C, Whyte P, Wall PG, Quinn T, ; (2007) 'Enterobacter sakazakii an emerging bacterial pathogen with implications for infant health'. Minerva Pediatrica, 2 (NA):137-148. [Details]
Murphy, M., Corcoran, D., Buckley, J.F., O'Mahony, M., Whyte, P., Fanning, S.; (2007) 'Development and application of multiple-locus variable number of tandem repeat analysis MLVA to subtype a collection of Listeria monocytogenes'. International Journal of Food Microbiology, 115 :187-194. [Details]
De Waal T, Zintl A, Neville D, Maguire D, Fanning S, Mulcahy G, Smith HV, ; (2007) 'Prevalence of Cryptosporidium species in intensively farmed pigs in Ireland'. Parasitology, 134 (Pt 11):1575-1582. [DOI] [Details]
Fanning S, Mullane NR, Iversen C, Healy B, Walsh C, Whyte P, Wall PG, Quinn T, ; (2007) 'Enterobacter sakazakii an emerging bacterial pathogen with implications for infant health'. Minerva Pediatrica, 2 (NA):137-148. [Details]
Fanning S, Mullane NR, Iversen C, Healy B, Walsh C, Whyte P, Wall PG, Quinn T, ; (2007) 'Enterobacter sakazakii an emerging bacterial pathogen with implications for infant health'. minerva pediatrica, 2 (NA):137-148. Available Online [Details]
Zintl, A., Neville, D., Maguire, D., Fanning, S., Mulcahy, G., Smith, H.V., De Waal, T.; (2007) 'Prevalence of Cryptosporidium species in intensively farmed pigs in Ireland'. Parasitology, . [Details]
Fanning S, Mullane NR, Iversen C, Healy B, Walsh C, Whyte P, Wall PG, Quinn T, ; (2007) 'Enterobacter sakazakii an emerging bacterial pathogen with implications for infant health'. Minerva Pediatrica, 2 (NA):137-148. [Details]
Murphy M, Buckley JF, Whyte P, O'Mahony M, Anderson W, Wall PG, Fanning S.; (2007) 'Surveillance of dairy production holdings supplying raw milk to the farmhouse cheese sector for Escherichia coli O157, O26 and O111'. Zoonoses and Public Health, 54 (9-10):358-365. [Details]
Iversen, C.,Lehner, A.,Mullane, N.,Marugg, J.,Fanning, S.,Stephan, R.,Joosten, H.; (2007) 'Identification of "Cronobacter" spp. (Enterobacter sakazakii)'. Journal of Clinical Microbiology, 45 (11):3814-3816. Available Online [DOI] [Details]
Breathnach, R.M., Fanning, S., Mulcahy, G., Bassett, H.F., Jones, B.R.; (2007) 'A study of dendritic cell and MHC class II expression in dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododermatitis'. Veterinary Journal, . [Details]
Breathnach, R.M., Fanning, S., Mulcahy, G., Bassett, H.F., Jones, B.R.; (2007) 'Canine pododermatitis and idiopathic disease'. Veterinary Journal, . [Details]
Mullane, N.R., Ryan, M., Iversen, C., Murphy, M., O¿Gaora, P., Quinn, T., Whyte, P., Wall., P.G., Fanning, S. ; (2007) 'Development of multiple-locus variable number tandem repeat analysis for the molecular subtyping of Enterobacter sakazakii '. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 74 :1223-1231. [Details]
43. Murphy, M., Buckley, J., Whyte, P., O¿Mahony, M., Anderson, W., Wall, P.G., Fanning, S. ; (2007) 'Surveillance of dairy production holdings supplying raw milk to the farmhouse cheese sector for Escherichia coli O157, O26 and O111'. Zoonoses and Public Health, 54 :358-365. [Details]
Drudy, D., Harnedy, N., Fanning, S., O'Mahony, R., Baird, A. and Kyne, L.; (2007) 'Isolation and characterisation of toxin A-negative, toxin B-positive C. difficile in Dublin, Ireland'. Clinical Microbiology and Infection, 13 :298-304. [Details]
Mullane NR, Iversen C, Healy B, Walsh C, Whyte P, Wall PG, Quinn T, Fanning S; (2007) 'Enterobacter sakazakii an emerging bacterial pathogen with implications for infant health'. Minerva Pediatrics, 59 (2):137-148. [Details]
Drudy D, Fanning S, Kyne L. ; (2007) 'Toxin A-negative, toxin B-positive Clostridium difficile'. International Journal of Infectious Diseases, 11 (1):5-10. [Details]
Drudy D, Harnedy N, Fanning S, Kyne L. ; (2007) 'Emergence and control of fluoroquinolone resistant toxin A-negative, toxin-B positive Clostridium difficile'. Infection Control and Hospital Epidemiology, 28 (8):932-940. [Details]
Drudy D, Kyne L, O'Mahony R, Fanning S. Gyr A ; (2007) 'Mutations in fluoroquinolone resistant Clostridium difficile PCR 027'. Emerging Infectious Diseases, 13 :504-505. [Details]
Drudy D, Harnedy N, Fanning S, O'Mahony R, Kyne L.; (2007) 'Isolation and characterisation of toxin A-negative, toxin B-positive Clostridium difficile in Dublin, Ireland'. Clinical Microbiology and Infection, 13 (3):298-304. [Details]
Long, S.,Fenelon, L.,Fitzgerald, S.,Nolan, N.,Burns, K.,Hannan, M.,Kyne, L.,Fanning, S.,Drudy, D.; (2007) 'First isolation and report of clusters of Clostridium difficile PCR 027 cases in Ireland'. Euro Surveill, 12 (4):E070426 3. [Details]
Zintl, A., Neville, D., Maguire, D., Fanning, S., Mulcahy, G., Smith, H.V. & de Waal, T.; (2007) 'Prevalence of Cryptosporidium species in intensively farmed pigs in Ireland'. Parasitology, 134 (11):1575-1582. [DOI] [Details]
Breathnach, R.M., Fanning, S., Mulcahy, G., Bassett, H.F., Jones, B.R.; (2007) 'A study of dendritic cell and MHC class II expression in dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododermatitis'. Veterinary Journal, . [Details]
Breathnach, R.M., Fanning, S., Mulcahy, G., Bassett, H.F., Jones, B.R.; (2007) 'Canine pododermatitis and idiopathic disease'. Veterinary Journal, . [Details]
Drudy, D., O'Rourke, M., Murphy, M., Mullane, N., O'Mahony, R., O'Mahony, M., Kelly, L., Fischer, M., Sanjaq, S., Shannon, P., Wall, P., Whyte, P., Fanning, S.; (2006) 'Comparison of Enterobacter sakazakii isolates by phenotypic and genotypic methods'. Journal of Food Microbiology, :127-134. [Details]
Mullane, N.R., Murray, J., Drudy, D., Prentice, N., Whyte, P., Wall, P.G., Parton, A., Fanning, S.; (2006) 'Detection of Enterobacter sakazakii in dried infant milk formula by cationic-magnetic bead capture'. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72 :6325-6330. [Details]
Drudy, D., Mullane, N.R., Quinn, T., Wall, P. & Fanning, S.; (2006) 'Enterobacter sakazakii: an emerging pathogen in powdered infant formula'. Clin. Infect. Dis, :996-1002. [Details]
Mullane, N., Drudy, D., Whyte, P., O'Mahony, M., Scannell, A., Wall., P.G., Fanning, S.; (2006) 'Enterobacter sakazakii: Biological properties and significance in dried infant milk formula (IMF) powder'. INTERNATIONAL JOURNAL OF DAIRY TECHNOLOGY, 59 :102-111. [Details]
Mullane, N.R., Drudy, D., Whyte, P., O'Mahony, M., Scannell, A.G.M., Wall, P.G. & Fanning, S.; (2006) 'Enterobacter sakazakii: biological properties and significance in dried infant milk formula (IMF)'. INTERNATIONAL JOURNAL OF DAIRY TECHNOLOGY, 110 :127-134. [Details]
Quinn, T., O'Mahony, R., Baird, A.W., Drudy, D., Whyte, P. & Fanning, S.; (2006) 'Multi-drug resistance in Salmonella enterica: efflux mechanisms and their relationships with the development of chromosomal resistance gene clusters'. CURRENT DRUG TARGETS, 7 :849-860. [Details]
Mullane, N.R., Murray, J., Drudy, D., Prentice, N., Whyte, P., Wall, P., Parton, A. & Fanning, S.; (2006) 'Quantitative detection of Enterobacter sakazakii in infant milk formula by cationic-magnetic bead capture'. APPLIED ENVIRONMENTAL MICROBIOLOGY, 72 :6325-6330. [Details]
Breathnach, R.M., Fanning, S., Mulcahy, G., Bassett, H.F., Jones, B.R. & Daly, P.; (2006) 'Evaluation of Th1-like, Th2-like and immunomodulatory cytokine mRNA expression in the skin of dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododermatitis'. Vet Dermatol, 171 (5):313-321. [Details]
McGill, K., Cowley, D., Moran, L., Scates, P., O'Leary, A., Madden, R. H., Carroll, C., McNamara, E., Moore, J. E., Fanning, S., Collins, J. D. Whyte, P.; (2006) 'Antibiotic resistance of retail food and human Campylobacter isolates on the island of Ireland from 2001-2002'. Epidemiol. Infect, 134 :1282-1291. [Details]
Zintl, A, Mulcahy, G, de Wall, T, de Waele, V, Byrne, C, Clyne, M, Holden, N, Fanning, S, ; (2006) 'An Irish perspective on Cryptosporidium'. Irish Vet J, 59 (9):495-500. [DOI] [Details]
Mullane, NR, Drudy, D, Whyte, P, O'Mahony, M, Scannell, AGM, Wall, PG, Fanning, S, ; (2006) 'Enterobacter sakazakii: biological properties and significance in dried infant milk formula (IMF) powder'. International Journal of Dairy Technology, 59 (2):102-111. [DOI] [Details]
McGill, K, Cowley, D, Moran, L, Scates, P, O'Leary, A, Madden, RH, Carroll, C, McNamara, E, Moore, JE, Fanning, S, Collins, JD, Whyte, P, ; (2006) 'Antibiotic resistance of retail food and human Campylobacter isolates on the island of Ireland from 2001-2002'. Epidemiology and Infection, 134 (6):1282-1291. [Details]
O'Mahony, R, Quinn, T, Drudy, D, Walsh, C, Whyte, P, Mattar, S, Fanning, S, ; (2006) 'Antimicrobial resistance in nontyphoidal Salmonella from food sources in Colombia: Evidence for an unusual plasmid-localized class 1 integron in serotypes typhimurium and anatum'. Microbial Drug Resistance-Mechanisms Epidemiology and Disease, 12 (4):269-277. [Details]
Corcoran, D, Clancy, D, O'Mahony, M, Grant, K, Hyland, E, Shanaghy, N, Whyte, P, McLauchlin, J, Moloney, A, Fanning, S, ; (2006) 'Comparison of Listeria monocytogenes strain types in Irish smoked salmon and other foods'. INT J HYG ENVIR HEAL, 209 (6):527-534. [Details]
Breathnach, RM; Fanning, S; Mulcahy, G; Bassett, HF; Jones, BR; Daly, P; ; (2006) 'Evaluation of Th-1-like, Th-2-like and immunomodulatory cytokine mRNA expression in the skin of dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododermatitis'. Veterinary Dermatology, 17 (5):313-321. [Details]
O'Mahony, R,Quinn, T,Drudy, D,Walsh, C,Whyte, P,Mattar, S,Fanning, S; (2006) 'Antimicrobial resistance in nontyphoidal Salmonella from food sources in Colombia: Evidence for an unusual plasmid-localized class 1 integron in serotypes typhimurium and anatum'. Microbial Drug Resistance-Mechanisms Epidemiology and Disease, 12 :269-277. [Details]
Daly, P,Drudy, D,Chalmers, WSK,Baxendale, W,Fanning, S,Callanan, JJ; (2006) 'Greyhound meningoencephalitis: PCR-based detection methods highlight an absence of the most likely primary inducing agents'. Veterinary Microbiology, 118 :189-200. [DOI] [Details]
Drudy, D,Quinn, T,O'Mahony, R,Kyne, L,O'Gaora, P,Fanning, S; (2006) 'High-level resistance to moxifloxacin and gatifloxacin associated with a novel mutation in gyrB in toxin-A-negative, toxin-B-positive Clostridium difficile'. J ANTIMICROB CHEMOTH, 58 :1264-1267. [DOI] [Details]
Corcoran, D,Clancy, D,O'Mahony, M,Grant, K,Hyland, E,Shanaghy, N,Whyte, P,McLauchlin, J,Moloney, A,Fanning, S; (2006) 'Comparison of Listeria monocytogenes strain types in Irish smoked salmon and other foods'. INT J HYG ENVIR HEAL, 209 :527-534. [DOI] [Details]
McGill, K,Cowley, D,Moran, L,Scates, P,O'Leary, A,Madden, RH,Carroll, C,McNamara, E,Moore, JE,Fanning, S,Collins, JD,Whyte, P; (2006) 'Antibiotic resistance of retail food and human Campylobacter isolates on the island of Ireland from 2001-2002'. Epidemiology and Infection, 134 :1282-1291. [DOI] [Details]
Reidy, N,Lennon, G,Fanning, S,Power, E,O'Shea, H; (2006) 'Molecular characterisation and analysis of bovine rotavirus strains circulating in Ireland 2002-2004'. Veterinary Microbiology, 117 :242-247. [DOI] [Details]
Corcoran, D,Quinn, T,Cotter, L,Whyte, P,Fanning, S; (2006) 'Antimicrobial resistance profiling and fla-typing of Irish thermophillic Campylobacter spp. of human and poultry origin'. Letters in Applied Microbiology, 43 :560-565. [DOI] [Details]
Breathnach, RM,Fanning, S,Mulcahy, G,Bassett, HF,Jones, BR,Daly, P; (2006) 'Evaluation of Th-1-like, Th-2-like and immunomodulatory cytokine mRNA expression in the skin of dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododermatitis'. Veterinary Dermatology, 17 :313-321. [Details]
Mullane, NR,Murray, J,Drudy, D,Prentice, N,Whyte, P,Wall, PG,Parton, A,Fanning, S; (2006) 'Detection of Enterobacter sakazakii in dried infant milk formula by cationic-magnetic-bead capture'. Applied and Environmental Microbiology, 72 :6325-6330. [DOI] [Details]
Miriagou, V,Carattoli, A,Fanning, S; (2006) 'Antimicrobial resistance islands: resistance gene clusters in Salmonella chromosome and plasmids'. Microbes and Infection, 8 :1923-1930. [DOI] [Details]
Payot, S,Bolla, JM,Corcoran, D,Fanning, S,Megraud, F,Zhang, QJ; (2006) 'Mechanisms of fluoroquinolone and macrolide resistance in Campylobacter spp'. Microbes and Infection, 8 :1967-1971. [DOI] [Details]
Moore, JE,Matsuda, M,Sekizuka, T,Fanning, S,Murayama, O,Yokoi, T,Kagawa, S,Nagano, K,Shimura, H,Watabe, M,Nagano, Y,Usui, K,Imamaki, R,Aritomi, T,Harada, C,Iida, H,Mitsuhashi, N,Miyatake, T,Shigematsu, M,Rao, JR,Lowery, CJ,Millar, BC,Dooley, JSG,Rooney, PJ; (2006) 'Subspecies characterization of urease-positive thermophilic Campylobacter (UPTC) isolated from shellfish employing modified flagellin (flaA) restriction fragment length polymorphism (RFLP) typing'. Journal of Shellfish Research, 25 :625-629. [Details]
Drudy, D,O'Rourke, M,Murphy, M,Mullane, NR,O'Mahony, R,Kelly, L,Fischer, M,Sanjaq, S,Shannon, P,Wall, P,O'Mahony, M,Whyte, P,Fanning, S; (2006) 'Characterization of a collection of Enterobacter sakazakii isolates from environmental and food sources'. Food Microbiology, 110 :127-134. [DOI] [Details]
Zintl, A,Mulcahy, G,de Waal, T,de Waele, V,Byrne, C,Clyne, M,Holden, N,Fanning, S; (2006) 'An Irish perspective on Cryptosporidium'. VET J, 59 :442-447. [Details]
Walsh, C,Duffy, G,O'Mahony, R,Fanning, S,Blair, IS,McDowell, DA; (2006) 'Antimicrobial resistance in Irish isolates of verocytotoxicyenic Escherichia coli (E-coli) - VTEC'. Food Microbiology, 109 :173-178. [DOI] [Details]
Minihan, D,Whyte, P,O'Mahony, M,Cowley, D,O'Halloran, F,Corcoran, D,Fanning, S,Collins, JD; (2006) 'Phenotypic and genotypic anti-microbial resistance profiles of Campflobacters from untreated feedlot cattle and their environment'. Veterinary Medicine, 53 :181-187. [Details]
Drudy, D,Mullane, NR,Quinn, T,Wall, PG,Fanning, S; (2006) 'Enterobacter sakazakii: An emerging pathogen in powdered infant formula'. Clinical Infectious Diseases, 42 :996-1002. [Details]
Acke, E,Whyte, P,Jones, BR,McGill, K,Collins, JD,Fanning, S; (2006) 'Prevalence of thermophilic Campylobacter species in cats and dogs in two animal shelters in Ireland'. Veterinary Record, 158 :51-54. [Details]
Corcoran, D,Quinn, T,Cotter, L,Fanning, S; (2006) 'An investigation of the molecular mechanisms contributing to high-level erythromycin resistance in Campylobacter'. International Journal of Antimicrobial Agents, 27 :40-45. [DOI] [Details]
Zintl, A, Mulcahy, G, de Waal, T, de Waele, V, Byrne, C, Clyne, M, Holden, N, Fanning, S, ; (2006) 'An Irish perspective on Cryptosporidium'. Irish Vet J, 59 (8):442-447. [DOI] [Details]
Mullane, NR; Murray, J; Drudy, D; Prentice, N; Whyte, P; Wall, PG; Parton, A; Fanning, S; ; (2006) 'Detection of Enterobacter sakazakii in dried infant milk formula by cationic-magnetic-bead capture'. Applied and Environmental Microbiology, 72 (9):6325-6330. [Details]
Zintl, A; Mulcahy, G; de Waal, T; de Waele, V; Byrne, C; Clyne, M; Holden, N; Fanning, S; ; (2006) 'An Irish perspective on Cryptosporidium'. Irish Veterinary Journal, 59 (8):442-447. [Details]
Breathnach, RM; Fanning, S; Mulcahy, G; Bassett, HF; Jones, BR; Daly, P; ; (2006) 'Evaluation of Th-1-like, Th-2-like and immunomodulatory cytokine mRNA expression in the skin of dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododermatitis'. Veterinary Dermatology, 17 (5):313-321. [Details]
Zintl, A; Mulcahy, G; de Wall, T; de Waele, V; Byrne, C; Clyne, M; Holden, N; Fanning, S; ; (2006) 'An Irish perspective on Cryptosporidium'. Irish Veterinary Journal, 59 (9):495-500. [Details]
Zintl, A; Mulcahy, G; de Wall, T; de Waele, V; Byrne, C; Clyne, M; Holden, N; Fanning, S; ; (2006) 'An Irish perspective on Cryptosporidium'. Irish Veterinary Journal, 59 (9):495-500. [Details]
Drudy, D; O'Rourke, M; Murphy, M; Mullane, NR; O'Mahony, R; Kelly, L; Fischer, M; Sanjaq, S; Shannon, P; Wall, P; O'Mahony, M; Whyte, P; Fanning, S; ; (2006) 'Characterization of a collection of Enterobacter sakazakii isolates from environmental and food sources'. International Journal of Food Microbiology, 110 (2):127-134. [Details]
Mullane, NR; Murray, J; Drudy, D; Prentice, N; Whyte, P; Wall, PG; Parton, A; Fanning, S; ; (2006) 'Detection of Enterobacter sakazakii in dried infant milk formula by cationic-magnetic-bead capture'. Applied and Environmental Microbiology, 72 (9):6325-6330. [Details]
Drudy, D; Mullane, NR; Quinn, T; Wall, PG; Fanning, S; ; (2006) 'Enterobacter sakazakii: An emerging pathogen in powdered infant formula'. Clinical Infectious Diseases, 42 (7):996-1002. [Details]
Mullane, NR; Drudy, D; Whyte, P; O'Mahony, M; Scannell, AGM; Wall, PG; Fanning, S; ; (2006) 'Enterobacter sakazakii: biological properties and significance in dried infant milk formula (IMF) powder'. International Journal of Dairy Technology, 59 (2):102-111. [Details]
Drudy, D; O'Rourke, M; Murphy, M; Mullane, NR; O'Mahony, R; Kelly, L; Fischer, M; Sanjaq, S; Shannon, P; Wall, P; O'Mahony, M; Whyte, P; Fanning, S; ; (2006) 'Characterization of a collection of Enterobacter sakazakii isolates from environmental and food sources'. International Journal of Food Microbiology, 110 (2):127-134. [Details]
Acke, E; Whyte, P; Jones, BR; McGill, K; Collins, JD; Fanning, S; ; (2006) 'Prevalence of thermophilic Campylobacter species in cats and dogs in two animal shelters in Ireland'. Veterinary Record, 158 (2):51-54. [Details]
Quinn, T; O'Mahony, R; Baird, AW; Drudy, D; Whyte, P; Fanning, S; ; (2006) 'Multi-drug resistance in Salmonella enterica: Efflux mechanisms and their relationships with the development of chromosomal resistance gene clusters'. Current Drug Targets, 7 (7):849-860. [Details]
Acke, E; Whyte, P; Jones, BR; McGill, K; Collins, JD; Fanning, S; ; (2006) 'Prevalence of thermophilic Campylobacter species in cats and dogs in two animal shelters in Ireland'. Veterinary Record, 158 (2):51-54. [Details]
Mullane, NR; Murray, J; Drudy, D; Prentice, N; Whyte, P; Wall, PG; Parton, A; Fanning, S; ; (2006) 'Detection of Enterobacter sakazakii in dried infant milk formula by cationic-magnetic-bead capture'. Applied and Environmental Microbiology, 72 (9):6325-6330. [Details]
Acke, E; Whyte, P; Jones, BR; McGill, K; Collins, JD; Fanning, S; ; (2006) 'Prevalence of thermophilic Campylobacter species in cats and dogs in two animal shelters in Ireland'. Veterinary Record, 158 (2):51-54. [Details]
Breathnach, RM; Fanning, S; Mulcahy, G; Bassett, HF; Jones, BR; Daly, P; ; (2006) 'Evaluation of Th-1-like, Th-2-like and immunomodulatory cytokine mRNA expression in the skin of dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododermatitis'. Veterinary Dermatology, 17 (5):313-321. [Details]
Quinn, T; O'Mahony, R; Baird, AW; Drudy, D; Whyte, P; Fanning, S; ; (2006) 'Multi-drug resistance in Salmonella enterica: Efflux mechanisms and their relationships with the development of chromosomal resistance gene clusters'. Current Drug Targets, 7 (7):849-860. [Details]
Drudy, D, Quinn, T, O'Mahony, R, Kyne, L, O'Gaora, P, Fanning, S, ; (2006) 'High-level resistance to moxifloxacin and gatifloxacin associated with a novel mutation in gyrB in toxin-A-negative, toxin-B-positive Clostridium difficile'. J ANTIMICROB CHEMOTH, 58 (6):1264-1267. [Details]
Drudy D, Quinn T, O'Mahony R, Kyne L, O'Gaora P, Fanning S.; (2006) 'High-level resistance to moxifloxacin and gatifloxacin associated with a novel mutation in gyrB in toxin-A-negative, toxin-B-positive Clostridium difficile'. Journal of Antimicrobial Chemotherapy, 58 (6):1264-1267. [Details]
Zintl A., Mulcahy G., De Waal T., De Waele V., Byrne C., Clyne M., Holden N. and Fanning S. ; (2006) 'An Irish perspective on Cryptosporidium'. Irish Veterinary Journal, 59 (in 2 parts):442/495-447/500. [DOI] [Details]
Drudy, D.,Quinn, T.,O'Mahony, R.,Kyne, L.,O'Gaora, P.,Fanning, S.; (2006) 'High-level resistance to moxifloxacin and gatifloxacin associated with a novel mutation in gyrB in toxin-A-negative, toxin-B-positive Clostridium difficile'. J Antimicrob Chemother, 58 (6):1264-7. [Details]
O¿Mahony, R., Quinn, T., Drudy, D., Walsh, C., Whyte, P., Matar, S., Fanning, S. ; (2006) 'Antimicrobial resistance in non-typhoidal Salmonella from food sources in Columbia: evidence for an unusual plasmid-localized Class 1 integron in serotypes Typhimurium and Anatum'. MICROBIAL DRUG RESISTANCE-MECHANISMS EPIDEMIOLOGY AND DISEASE, 12 :269-277. [Details]
Callanan JJ, Daly P, Drudy D, Chalmers WS, Baxendale W, Fanning S, ; (2006) 'Greyhound meningoencephalitis: PCR-based detection methods highlight an absence of the most likely primary inducing agents'. Veterinary Microbiology, 118 (3-4):189-200. [DOI] [Details]
Minihan, D., O'Mahony, M., Whyte, P., Fanning, S., Fitzsimmons, T. and Collins, J.D. ; (2006) 'The antimicrobial resistance profiles of Campylobacter and E. coli O157 isolates from a cohort of clinically normal feedlot cattle'. Journal of Food, Agriculture and Environment, 4, :64-69. [Details]
Mullane, N.R., Murray, J., Drudy, D., Prentice, N., Whyte, P., Wall, P., Parton, A. & Fanning, S.; (2006) 'Quantitative detection of Enterobacter sakazakii in infant milk formula by cationic-magnetic bead capture'. Applied Environmental Microbiology, 72 :6325-6330. [Details]
McGill, K., Cowley, D., Moran, L., Scates, P., O'Leary, A., Madden, R. H., Carroll, C., McNamara, E., Moore, J. E., Fanning, S., Collins, J. D. Whyte, P.; (2006) 'Antibiotic resistance of retail food and human Campylobacter isolates on the island of Ireland from 2001-2002'. Epidemiol. Infect, 134 :1282-1291. [Details]
Corcoran, D., Quinn, T., Cotter, L., Whyte, P. Fanning, S.; (2006) 'Antimicrobial resistance profiling and fla- typing of Irish thermophillic Campylobacter spp. of human and poultry origin'. LETTERS IN APPLIED MICROBIOLOGY, 43 :560-565. [Details]
Drudy, D., O'Rourke, M., Murphy, M., Mullane, N.R., O'Mahony, R., Kelly, L., Fischer, M., Sanjaq, S., Shannon, P., Wall, P., O'Mahony, M., Whyte, P., Fanning, S. C; (2006) 'Characterisation of a collection of Enterobacter sakazakii isolates from environmental and food sources'. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 110 :127-134. [Details]
Drudy, D., O'Rourke, M., Murphy, M., Mullane, N., O'Mahony, R., O'Mahony, M., Kelly, L., Fischer, M., Sanjaq, S., Shannon, P., Wall, P., Whyte, P., Fanning, S.; (2006) 'Comparison of Enterobacter sakazakii isolates by phenotypic and genotypic methods'. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 110 :127-134. [Details]
Mullane, N., Drudy, D., Whyte, P., O'Mahony, M., Scannell, A., Wall., P.G., Fanning, S.; (2006) 'Enterobacter sakazakii: Biological properties and significance in dried infant milk formula (IMF) powder'. INTERNATIONAL JOURNAL OF DAIRY TECHNOLOGY, 59 :102-111. [Details]
Minihan, D., Whyte, P., O'Mahony, M., Cowley, D., O'Halloran, F., Corcoran, D., Fanning, S., Collins, J.D.; (2006) 'Phenotypic and genotypic antimicrobial resistance profiles of Campylobacters from untreated feedlot cattle and their environment'. JOURNAL OF VETERINARY MEDICINE B, 53 :181-187. [Details]
McGill, K., Cowley, D., Moran, L., Scates, P., O'Leary, A., Madden, R. H., Carroll, C., McNamara, E., Moore, J. E., Fanning, S., Collins, J. D. & Whyte, P.; (2006) 'Antibiotic resistance of retail food and human Campylobacter isolates on the island of Ireland from 2001-2002'. Epidemiol. Infect, 134 :1282-1291. [Details]
Acke, E., Whyte, P., Jones, B.R., McGill, K., Collins, J.D. & Fanning, S.; (2006) 'Prevalence of thermophilic Campylobacter species in cats and dogs in two animal shelters in Ireland'. VETERINARY RECORD, 158 :51-54. [Details]
Drudy, D., O'Rourke, M., Murphy, M., Mullane, N.R., O'Mahony, R., Kelly, L., Fischer, M., Sanjaq, S., Shannon, P., Wall, P., O'Mahony, M., Whyte, P., Fanning, S. C; (2006) 'Characterisation of a collection of Enterobacter sakazakii isolates from environmental and food sources'. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 110 :127-134. [Details]
Minihan, D., Whyte, P., O'Mahony, M., Cowley, D., O'Halloran, F., Corcoran, D., Fanning, S., Collins, J.D.; (2006) 'Phenotypic and genotypic antimicrobial resistance profiles of Campylobacters from untreated feedlot cattle and their environment'. JOURNAL OF VETERINARY MEDICINE B, 53 :181-187. [Details]
Mullane, N., Drudy, D., Whyte, P., O'Mahony, M., Scannell, A., Wall., P.G., Fanning, S.; (2006) 'Enterobacter sakazakii: Biological properties and significance in dried infant milk formula (IMF) powder'. INTERNATIONAL JOURNAL OF DAIRY TECHNOLOGY, 59 :102-111. [Details]
Zintl, A., Mulcahy, G., De Waal, T., De Waele, V., Byrne, C., Clyne, M., Holden, N.M. and Fanning S.; (2006) 'An Irish perspective on Cryptosporidium (part 1)'. Irish Veterinary Journal, 59 :442-447. [Details]
Zintl A., Mulcahy G., De Waal T., De Waele V., Byrne C., Clyne M., Holden N. M. and Fanning S.; (2006) 'An Irish perspective on Cryptosporidium (part II)'. Irish Veterinary Journal, 59 :495-500. [DOI] [Details]
Daly, P., Drudy, D., Chalmers, W.S., Baxendale, W., Fanning, S., Callanan, J.J. ; (2006) 'Greyhound meningoencephalitis: PCR-based detection methods highlight an absence of the most likely primary inducing agents'. Veterinary Microbiology, 118 (3-4):189-200. [Details]
Zintl, A., Mulcahy, G., de Waal, T., de Waele, V., Byrne, C., Clyne, M., Holden, N. & Fanning, S.; (2006) 'An Irish perspective on Cryptosporidium'. Irish Veterinary Journal, 58 (8):442-447. [Details]
Mullane, N.R., Whyte, P., Wall, P., Quinn, T., Fanning, S.; (2006) 'Application of pulsed-field gel electrophoresis to characterise and trace the prevalence of Enterobacter sakazakii in an infant formula processing facility'. International Journal of Food Microbiology, 116 :73-81. [Details]
Drudy, D., O'Rourke, M., Murphy, M., Mullane, N.R., O'Mahony, R., Kelly, L., Fischer, M., Sanjaq, S., Shannon, P., Wall, P., O'Mahony, M., Whyte, P., Fanning, S.; (2006) 'Characterisation of a collection of Enterobacter sakazakii isolates from environmental and food sources'. International Journal of Food Microbiology, 110 :127-134. [Details]
Minihan, D., O'Mahony, M., Whyte, P., Fanning, S., Fitzsimons, T., Collins, J.D.; (2006) 'The antimicrobial resistance profiles of Campylobacter and E. coli O157 from a cohort of clinically normal feedlot cattle'. Journal of Food, Agriculture and Environment, 4 :64-69. [Details]
Abbott, Y., O'Mahony, R., Leonard, N, Quinn, P. J., van der Reijden, T., Dijkshoorn, L. & Fanning, S.; (2005) 'Chatacterisation of a 2.6 kbp variable region in a class 1 integron identified in an Acinetobacter baumanii strain isolated from a horse'. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 55 :367-370. [Details]
O'Mahony, R., Abbott, Y., Leonard, N. C., Markey, B. K., Quinn, P. J., Pollock, P., Fanning, S. & Roosney, A.; (2005) 'Methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals and veterinary personnel in Ireland'. VETERINARY MICROBIOLOGY, 109 :285-296. [Details]
Whyte, P., Fanning, S., O'Mahony, M., O'Mahony, R., Drudy, D. ; (2005) 'Public health and economic burden of infectious food-borne diseases in Ireland'. IRISH VETERINARY JOURNAL, 58 :279-283. [Details]
O'Mahony, R., Saugy, M., Leonard, N., Drudy, D., Bradshaw, B., Egan, J., Whyte, P., O'Mahony, M., Wall., P. & Fanning, S.; (2005) 'Antimicrobial resistance in isolates of Salmonella spp. from pigs and the characterisation of a S. Infantis gene cassette'. Foodborne Pathog. Dis, :274-281. [Details]
Whyte, P., Fanning, S., O'Mahony, M., O'Mahony, R., Drudy, D.; (2005) 'Public health and economic burden of infectious food-borne diseases in Ireland'. IRISH VETERINARY JOURNAL, 58 :279-283. [Details]
Abbott Y,O'Mahony R,Leonard N,Quinn PJ,van der Reijden T,Dijkshoorn L,Fanning S, ; (2005) 'Characterization of a 2.6 kbp variable region within a class 1 integron found in an Acinetobacter baumannii strain isolated from a horse'. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 55 :367-370. [Details]
Drudy, D., O'Rourke, M., O'Mahony, M., Murphy, M., Mullane, N.R., O'Mahony, R., Kelly, L., Fischer, M., Sanjaq, S., Shannon, P., Wall, P., Whyte, P. and Fanning, S.; (2005) 'Comparison of Enterobacter sakazakii isolates by phenotypic and genotypic methods'. International Journal of Food Microbiology, . [Details]
O'Mahony, R., Abbott, Y., Leonard, F.C., Markey, B.K., Quinn, P.J., Pollock, P.J., Fanning, S. & Rossney, A.S.; (2005) 'Methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals and veterinary personnel in Ireland'. Veterinary Microbiology, 109 :285-296. [Details]
Abbott, Y., O'Mahony, R., Leonard, N, Quinn, P. J., van der Reijden, T., Dijkshoorn, L. & Fanning, S.; (2005) 'Chatacterisation of a 2.6 kbp variable region in a class 1 integron identified in an Acinetobacter baumanii strain isolated from a horse'. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 55 :367-370. [Details]
O'Mahony, R; Saugy, M; Leonard, N; Drudy, D; Bradshaw, B; Egan, J; Whyte, P; O'Mahony, M; Wall, P; Fanning, S; ; (2005) 'Antimicrobial resistance in isolates of Salmonella spp. from pigs and the characterization of an S. Infantis gene cassette'. Foodborne Pathogens and Disease, 2 (3):274-281. [Details]
Moore, JE; Corcoran, D; Dooley, JSG; Fanning, S; Lucey, B; Matsuda, M; McDowell, DA; Megraud, F; Millar, BC; O'Mahony, R; O'Riordan, L; O'Rourke, M; Rao, JR; Rooney, PJ; Sails, A; Whyte, P; ; (2005) 'Campylobacter'. Veterinary Research, 36 (3):351-382. [Details]
O'Mahony, R; Abbott, Y; Leonard, FC; Markey, BK; Quinn, PJ; Pollock, PJ; Fanning, S; Rossney, AS; ; (2005) 'Methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals and veterinary personnel in Ireland'. Veterinary Microbiology, 109 (3-4):285-296. [Details]
O'Mahony, R; Saugy, M; Leonard, N; Drudy, D; Bradshaw, B; Egan, J; Whyte, P; O'Mahony, M; Wall, P; Fanning, S; ; (2005) 'Antimicrobial resistance in isolates of Salmonella spp. from pigs and the characterization of an S. Infantis gene cassette'. Foodborne Pathogens and Disease, 2 (3):274-281. [Details]
Murphy, M,Carroll, A,Whyte, P,O'Mahony, M,Anderson, W,McNamara, E,Fanning, S; (2005) 'Prevalence and characterization of Escherichia coli O26 and O111 in retail minced beef in Ireland'. Food, 2 :357-360. [Details]
O'Mahony, R,Saugy, M,Leonard, N,Drudy, D,Bradshaw, B,Egan, J,Whyte, P,O'Mahony, M,Wall, P,Fanning, S; (2005) 'Antimicrobial resistance in isolates of Salmonella spp. from pigs and the characterization of an S. Infantis gene cassette'. Food, 2 :274-281. [Details]
Murphy, BP; Murphy, M; Buckley, JF; Gilroy, D; Rowe, MT; McCleery, D; Fanning, S; ; (2005) 'In-line milk filter analysis: Escherichia coli O157 surveillance of milk production holdings'. International Journal of Hygiene and Environmental Health, 208 (5):407-413. [Details]
Reen, FJ,Boyd, EF,Porwollik, S,Murphy, BP,Gilroy, D,Fanning, S,McClelland, A; (2005) 'Genomic comparisons of Salmonella enterica serovar Dublin, Agona, and typhimurium strains recently isolated from milk filters and bovine samples from ireland, using a Salmonella microarray'. Applied and Environmental Microbiology, 71 :1616-1625. [DOI] [Details]
Murphy, M; Carroll, A; Whyte, P; O'Mahony, M; Anderson, W; McNamara, E; Fanning, S; ; (2005) 'Prevalence and characterization of Escherichia coli O26 and O111 in retail minced beef in Ireland'. Foodborne Pathogens and Disease, 2 (4):357-360. [Details]
O'Mahony, R., Abbott, Y., Leonard, F.C., Markey, B.K., Quinn, P.J., Pollock, P.J., Fanning, S. & Rossney, A.S.; (2005) 'Methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals and veterinary personnel in Ireland'. VETERINARY MICROBIOLOGY, 109 :285-296. [Details]
Abbott, Y,O'Mahony, R,Quinn, PJ,van der Reijden, T,Dijkshoorn, L,Fanning, S; (2005) 'Characterization of a 2.6 kbp variable region within a class 1 integron found in an Acinetobacter baumannii strain isolated from a horse'. J ANTIMICROB CHEMOTH, 55 :367-370. [DOI] [Details]
Daly, M,Villa, L,Pezzella, C,Fanning, S,Carattoli, A; (2005) 'Comparison of multidrug resistance gene regions between two geographically unrelated Salmonella serotypes'. J ANTIMICROB CHEMOTH, 55 :558-561. [DOI] [Details]
O'Mahony, R,Abbott, Y,Leonard, FC,Markey, BK,Quinn, PJ,Pollock, PJ,Fanning, S,Rossney, AS; (2005) 'Methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals and veterinary personnel in Ireland'. Veterinary Microbiology, 109 :285-296. [DOI] [Details]
Murphy, BP,Murphy, M,Buckley, JF,Gilroy, D,Rowe, MT,McCleery, D,Fanning, S; (2005) 'In-line milk filter analysis: Escherichia coli O157 surveillance of milk production holdings'. INT J HYG ENVIR HEAL, 208 :407-413. [DOI] [Details]
Corcoran, D,Quinn, T,Cotter, L,Fanning, S; (2005) 'Relative contribution of target gene mutation and efflux to varying quinolone resistance in Irish Campylobacter isolates'. FEMS Microbiology Letters, 253 :39-46. [DOI] [Details]
Corcoran, D,Quinn, T,Cotter, L,O'Halloran, F,Fanning, S; (2005) 'Characterization of a cmeABC operon in a quinolone-resistant Campylobacter coli isolate of Irish origin'. Microbial Drug Resistance-Mechanisms Epidemiology and Disease, 11 :303-308. [Details]
O'Mahony, R., Saugy, M., Leonard, N., Drudy, D., Bradshaw, B., Egan, J., Whyte, P., O'Mahony, M., Wall., P. & Fanning, S.; (2005) 'Antimicrobial resistance in isolates of Salmonella spp. from pigs and the characterisation of a S. Infantis gene cassette'. Foodborne Pathog. Dis, :274-281. [Details]
Mullane, N.R., Drudy, D., Whyte, P., O'Mahony, M., Scannell, A.G.M., Wall, P.G. and Fanning, S; (2005) 'Enterobacter sakazakii: biological properties and significance in dried infant milk formula (IMF)'. International Journal of Dairy Technology, . [Details]
Mullane, N.R., Murray, J., Drudy, D., Prentice, N., Whyte, P., Wall, P.G., Parton, A. and Fanning, S; (2005) 'Qualitative detection of Enterobacter sakazakii in infant milk formula (IMF) by charged bead capture'. International Journal of Food Microbiology, . [Details]
Walsh, C,Duffy, G,Sheridan, JJ,Fanning, S,Blair, IS,Mcdowell, DA; (2005) 'Thermal resistance of antibiotic-resistant and antibiotic-sensitive Salmonella spp. on chicken meat'. JOURNAL OF FOOD SAFETY, 25 :288-302. [Details]
Minihan, D., Whyte, P., O'Mahony, M., Fanning, S., McGill K., Collins, J.D. ; (2004) 'Campylobacter spp. in Irish feedlot cattle: A longitudinal study involving pre-harvest and harvest phases of the food chain'. JOURNAL OF VETERINARY MEDICINE B, 51 :28-33. [Details]
Whyte, P., McGill, K., Cowley, D., Madden, R.H., Moran, L., Scates, P., Carroll, C., O'Leary, A., Fanning, S., Collins, J.D., McNamara, E., Moore, J.E., Cormican, M. ; (2004) 'Occurrence of Campylobacter in retail foods in Ireland'. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 95 :111-118. [Details]
Whyte, P,McGill, K,Cowley, D,Madden, RH,Moran, L,Scates, P,Carroll, C,O'Leary, A,Fanning, S,Collins, JD,McNamara, E,Moore, JE,Cormican, M; (2004) 'Occurrence of Campylobacter in retail foods in Ireland'. Food Microbiology, 95 :111-118. [DOI] [Details]
Minihan, D., Whyte, P., O'Mahony, M., Fanning, S., Doyle, M., Collins, J.D. ; (2004) 'An investigation of transport, lairage and hide cleanliness on Camplyobacter prevalence in feedlot cattle and dressed carcasses'. Journal of Food Safety, 24 :37-52. [Details]
Minihan, D,Whyte, P,O'Mahony, M,Fanning, S,Doyle, M,Collins, JD; (2004) 'An investigation of transport, lairage and hide cleanliness on Campylobacter prevalence in feedlot cattle and dressed carcasses'. Food, 24 :37-52. [Details]
Lucey, B; O'Halloran, F; Wall, P; Fanning, S; ; (2003) 'Ciprofloxacin-resistant Campylobacter'. Veterinary Record, 152 (3):91-91. [Details]
Moore, JE,Murray, L,Fanning, S,Cormican, M,Daly, M,Delappe, N,Morgan, B,Murphy, PG; (2003) 'Comparison of phenotypic and genotypic characteristics of Salmonella bredeney associated with a poultry-related outbreak of gastroenteritis in Northern Ireland'. Journal of Infection, 47 :33-39. [DOI] [Details]
Lucey B, Cryan B, O'Halloran F, Wall PG, Buckley T, Fanning S. ; (2002) 'Trends in antimicrobial susceptibility among isolates of Campylobacter species in Ireland and the emergence of resistance to ciprofloxacin'. Veterinary Record, 151 (11):317-320. [Details]
Walsh, C., Duffy, G., O`Mahony, R., Fanning, S., Blair, I.S. and McDowell, D.A. ; (2006) 'Antimicrobial Resistance in Irish isolates of Verocytotoxigenic Escherichia coli (E. coli)-VTEC'. International Journal of Food Microbiology, . [Details]
Healy B., Cooney, S., O¿Brien, S., Iversen, C., Whyte, P., Nally, J., Callnan, J.J. and Fanning, S.; (2009) 'Cronobacter (Enterobacter sakazakii): an opportunistic foodborne pathogen'. Foodborne Pathogens and Disease, . [Details]
Dolan, A., Burgess, C., Fanning, S. and Duffy, G. ; (2009) 'Application of a quantitative reverse-transcription PCR (qRT-PCR) for the determination of the total viable count (TVC) on meat samples'. Journal of Microbiological Methods, . [Details]
Martins, A., Spengler, G., Rodrigues, L., Viveiros, M., Ramos, J., Martins, M., Couto, I., Fanning, S., Pagés, J.-M., Bolla, J.-M., Molnar, J. and Amaral, L.; (2009) 'pH modulation of efflux pump activity of multi-drug resistant E. coli: relationship to the protection of the organism during its passage and eventual colonization of the colon'. PLoS ONE, . [Details]
Molloy, C., Cagney, C., O¿Brien S., Fanning, S. and Duffy, G.; (2009) 'Sources of Cronobacter (formerly Enterobacter sakazakii) in food production animals, the farming environment and retail foods and characterisation by PFGE'. International Journal Food Microbiology, . [Details]
Stoop, B., Lehner, A., Iversen, C., Fanning, S. and Stephan, R; (2009) 'Development and evaluation of rpoB-based PCR systems to differentiate the six proposed species within the genus Cronobacter'. Int J Food Microbiol, . [Details]
Lenahan, M., O'Brien, S., Byrne, C., Ryan, M., Kennedy, C.A., McNamara, E., Fanning, S., Sheridan, J. and Sweeney, T; (2009) 'Molecular characterisation of Irish E. coli O157:H7 isolates of human, bovine, ovine and porcine origin'. Journal of Applied Microbiology, (75):3146-3152. [Details]
Almedia, C., Azevedo, N.F., Iversen, C., Fanning, S., Keevil, C.W. and Vieira, M.J; (2009) 'Development and application of a novel peptide nucleic acid probe for the specific detection of Cronobacter in powdered infant formula'. Applied Environmental Microbiology, (75):2925. [Details]
Murphy, B., O¿Mahony, E., Buckley, J. F., O¿Brien, S. and Fanning, S; (2009) 'Characterisation of Staphylococcus aureus isolated from dairy animals in Ireland'. Zoonoses and Public Health, . [Details]
Acke, E., McGill, K., Quinn, T., Jones, B., Fanning, S. and Whyte, P; (2009) 'Prevalence of Campylobacter species in household pets in Ireland'. Foodborne Pathogens and Disease, 6 :705-710. [Details]
Acke, E., McGill, K., Golden, O., Jones, B., Fanning, S. and Whyte, P; (2009) 'Prevalence of thermophilic Campylobacter species in household cats and dogs in Ireland'. The Veterinary Record, (10):44-47. [Details]
Toomey, N., Monaghan, A., Fanning, S. and Bolton, D; (2009) 'Assessment of horizontal gene transfer in Lactic Acid bacteria-a comparison of mating techniques with a view to optimising conjugation conditions'. Journal of Microbiological Methods, . [Details]
O¿Brien, S., Healy, B., Negredo, C., Anderson, W., Fanning, S. and Iversen, C; (2009) 'Cronobacter species (Enterobacter sakazakii) in follow-on infant formulas'. Letters in Applied Microbiology, (48):536-541. [Details]
Spengler, G., Martins, A., Schelz, Z., Rodrigues, L., Aagaard, L., Martins, M, Santos-Costa, S., Couto, I., Viveros, M., Fanning, S., Kristiansen, J.E., Molnar, J. and Amaral, L; (2009) 'Characterisation of intrinsic efflux activity of Enterococcus faecalis ATCC29212 by a semi-automated ethidium bromide method'. In Vivo, (23):81-88. [Details]
O¿Regan, E. Quinn, T, McCusker, M., Pagès, J-M., Piddock, L.V.P. and Fanning, S; (2009) 'Multiple regulatory pathways associated with high-level ciprofloxacin and multi-drug resistance in Salmonella enterica serovar Enterotodis ¿involvement of ramA and other global regulators'. Antimicrobial Agents and Chemotherapy, (53):1080-1087. [Details]
El-Sharoud, W., O¿Brien, S., Negredo, C., Iversen, C., Fanning, S. and Healy, B; (2009) 'Isolation and characterisation of Cronobacter recovered from dried milk and related products'. BMC microbiology, (2):24-24. [Details]
Toomey, N., Monaghan, A., Fanning, S. and Bolton, D; (2009) 'Transfer of antibiotic resistatnce markers between lactic acid bacteria in model rumen and plant environments'. Applied and Environmental Microbiology, (75):3146-3152. [Details]
Toomey, N., Monaghan, A., Fanning, S. and Bolton, D; (2009) '. Assessment of antimicrobial resistance transfer between Lactic Acid Bacteria and food-borne pathogens, including Listeria spp., Salmonella spp., Staphylococcus aureus, and Escherichia coli, using in vitro methods and mating in a food matrix'. Foodborne Pathog Dis, (6):925-933. [Details]
Patriarchi, A., Maunsell, B., O¿Mahony, E., Fox, Á.; Fanning, S., Buckley, J. and Bolton, D; (2009) 'Prevalence of Campylobacter in s subset of intensive poultry flocks in Ireland'. Letters in Applied Microbiology, (49):305-310. [Details]
O¿Brien, S., Healy, B., Negredo, C., Fanning, S. and Iversen, C.; (2009) 'Evaluation of a new one-step enrichment for the isolation of Cronobacter spp. (Enteobacter sakazakii) from powdered infant formula'. J FOOD PROTECT, . [Details]
Martins, A., Iversen, C., Rodrigues, L., Spengler, G., Ramos, J., Kern, W.V., Couto, I., Viveiros, M., Fanning, S., Pagés, J.-M. and Amaral, L.; (2009) 'AcrAB-mediated MDR phenotype is maintained after efflux pump genes and their regulators have restored wild type activities'. International Journal of Antimicrobial Agents, . [Details]
Healy, B., Huynh, S., Mullane, N., Parker, C.T., O¿Brien, S., Iversen, C., Stephan, R., and Fanning, S.; (2009) 'Microarray-based comparitive genomic indexing (CGI) of the Cronobacter genus (Enteobacter sakazakii)'. Int J Food Microbiol, . [Details]
Cashman, W., Buckley, J., Quigley, T., Fanning, S., More, S., Egan, J., Berry, D., Grant, I., O' Farrell, K., ; (2008) 'Risk factors for the introduction and within-herd transmission of Mycobacterium avium subspecies paratuberculosis (MAP) infection off 59 Irish dairy herds'. Irish Veterinary Journal, 61 (7):464-467. [Details]
Healy, B., Mullane, N., Collin, V., Mailler, S., Iversen, C., Chatellier, S., Storrs, M., Fanning, S., ; (2008) 'Evaluation of an automated repetitive sequence-based PCR system for Subtyping Enterobacter sakazakii'. Journal of Food Protection, 71 (7):1372-1378. [Details]
Fanning S, O'Regan E, McCabe E, Burgess C, McGuinness S, Barry T, Duffy G, Whyte P, ; (2008) 'Development of a real-time multiplex PCR assay for the detection of multiple Salmonella serotypes in chicken samples'. BMC Microbiology, (NA). [DOI] [Details]
Mannion, C., Egan, J., Lynch, B. P., Fanning, S., Leonard, N., ; (2008) 'An investigation into the efficacy of washing trucks following the transportation of pigs - A Salmonella perspective'. Foodborne Pathogens and Disease, 5 (3):261-271. [Details]
Lennon, G., Reidy, N., Cryan, B., Fanning, S., O'Shea, H., ; (2008) 'Changing profile of rotavirus in Ireland: Predominance of P[8] and emergence of P[6] and P[9] in mixed infections'. Journal of Medical Virology, 80 (3):524-530. [Details]
Arku, B., Mullane, N., Fox, E., Fanning, S. A., Jordan, K., ; (2008) 'Enterobacter sakazakii survives spray drying'. International Journal of Dairy Technology, 61 (1):102-108. [Details]
Breathnach, R. M., Fanning, S., Mulcahy, G., Bassett, H. F., Jones, B. R., ; (2008) 'A study of dendritic cell and MHC class II expression in dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododerniatitis'. Veterinary Journal, 177 (3):352-359. [Details]
Mulcahy G, Zintl A, Proctor AF, Read C, Dewaal T, Shanaghy N, Fanning S, ; (2008) 'The prevalence of Cryptosporidium species and subtypes in human faecal samples in Ireland'. Epidemiology and Infection, (NA):1-8. [DOI] [Details]
Breathnach, R. M., Fanning, S., Mulcahy, G., Bassett, H. F., Jones, B. R., ; (2008) 'Canine pododermatitis and idiopathic disease'. Veterinary Journal, 176 (2):146-157. [Details]
Murphy, M., Minihan, D., Buckley, J. F., O'Mahony, M., Whyte, P., Fanning, S., ; (2008) 'Multiple-locus variable number of tandem repeat analysis (MLVA) of Irish verocytotoxigenic Escherichia coli O157 from feedlot cattle: uncovering strain dissemination routes'. BMC Veterinary Research, 4 . [Details]
Martins, M., Dastidar, S. G., Fanning, S., Kristiansen, J. E., Molnar, J., Pages, J. M., Schelz, Z., Spengler, G., Viveiros, M., Amaral, L., ; (2008) 'Potential role of non-antibiotics (helper compounds) in the treatment of multidrug-resistant Gram-negative infections: mechanisms for their direct and indirect activities'. International Journal of Antimicrobial Agents, 31 (3):198-208. [Details]
Murphy, B. P., Buckley, J. F., O'Connor, E. M., Gilroy, D., Fanning, S., ; (2008) 'Comparison of Salmonella species recovered from Irish liquid milk production holdings with temporal clinical veterinary isolates'. International Journal of Hygiene and Environmental Health, 211 (3-4):283-291. [Details]
Murphy, M, Carroll, A, Walsh, C, Whyte, P, OMahony, M, Anderson, W, McNamara, E, Fanning, S, ; (2007) 'Development and assessment of a rapid method to detect Escherichia coli O26, O111 and O157 in retail minced beef'. INT J HYG ENVIR HEAL, 210 :155-161. [Details]
Iversen, C, Lehner, A, Mullane, N, Bidlas, E, Cleenwerck, I, Marugg, J, Fanning, S, Stephan, R, Joosten, H, ; (2007) 'The taxonomy of Enterobacter sakazakii: proposal of a new genus Cronobacter gen. nov and descriptions of Cronobacter sakazakii comb. nov Cronobacter sakazakii subsp sakazakii, comb. nov., Cronobacter sakazakii subsp malonaticus subsp nov., Cronobacter tur'. BMC Evolutionary Biology, 7 . [Details]
Murphy, BP, OMahony, R, Buckley, JF, Shine, P, Boyd, EF, Gilroy, D, Fanning, S, ; (2007) 'Investigation of a global collection of nontyphoidal Salmonella of various serotypes cultured between 1953 and 2004 for the presence of class 1 integrons'. FEMS Microbiology Letters, 266 :170-176. [Details]
Fanning S, Mullane NR, Iversen C, Healy B, Walsh C, Whyte P, Wall PG, Quinn T, ; (2007) 'Enterobacter sakazakii an emerging bacterial pathogen with implications for infant health'. Minerva Pediatrica, 2 (NA):137-148. [Details]
Quinn, T, Bolla, JM, Pages, JM, Fanning, S, ; (2007) 'Antibiotic-resistant Campylobacter: could efflux pump inhibitors control infection?'. J ANTIMICROB CHEMOTH, 59 :1230-1236. [Details]
O'Mahony, E., Patriarchi, A., Maunsell, B., Buckley, J. F., O'Sullivan, M. B., Fanning, S., Bolton, D. J., ; (2007) 'Distribution of Campylobacter in a subset of intensive poultry flocks on the island of Ireland: Identification of possible factors affecting that distribution'. Zoonoses and Public Health, 54 :133-133. [Details]
Drudy, D; Mullane, NR; Quinn, T; Wall, PG; Fanning, S; ; (2006) 'Enterobacter sakazakii: An emerging pathogen in powdered infant formula'. Clinical Infectious Diseases, 42 (7):996-1002. [Details]
Zintl A. , Skerrett H.E., Gray J.S. and Mulcahy G. ; (2005) 'Possible mechanisms underlying age-related resistance to bovine babesiosis'. Parasite Immunology, 27 :115-120. [DOI] [Details]
Duffy, G., Walsh, C., Blair, I.S. and McDowell D.A. ; (2005) 'Survival of antibiotic resistant and antibiotic sensitive strains of E. coli O157 and E. coli O26 in Food Matrices'. International Journal of Food Microbiology, . [Details]
Drudy D. ; (0) 'Investigation of Mechanisms of Anti-microbial Resistance in Clostridium difficile'. *, . [Details]
Drudy D. ; (0) 'Molecular Epidemiology of C. diffficile (A prevalence study of the incidence and prevalence of epidemic strain types of in Dublin hospitals)'. *, . [Details]
Zintl A., Mulcahy G., De Waal T., De Waele V., Byrne C., Clyne M., Holden N. and Fanning S. ; (0) 'An Irish perspective on Cryptosporidium'. Irish Veterinary Journal, . [Details]
Drudy D. ; (0) 'Development of Real-Time PCR and ribotyping for Rapid Diagnosis of Clostridium difficile'. *, . [Details]
Iversen, C., Lerhner, A., Mullane, N., Bidlas, E., Cleenwerck, I., Marugg, J., Fanning, S., Stephan, R. and Joosten, H. ; (2007) 'The identification and taxonomy of Enterobacter sakazakii: a proposed new genus Cronobacter gen. nov. containing type species Cronobacter sakazakii subsp. sakazakii, Cronobacter sakazakii subsp. nov. malonaticus, Cronobacter turicensis subsp. nov., Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. nov., lausanensis subsp., Cronobacter dublinensis subsp. nov. lactardi subsp. nov. and Cronobacter genomospecies 1'. BMC Evolutionary Biology, 7 :64-75. [Details]
Drudy, D., Quinn, T., O'Mahony, R., Kyne, L. and Fanning, S. ; (2007) 'Mutations in fluoroquinolone resistance Clostridium difficile PCR O27'. Emerging Infectious Diseases, 13 :504-505. [Details]
Mullane, N.R., Whyte, P., Wall, P., Quinn, T. and Fanning, S.; (2007) 'Application of pulsed-field gel electrophoresis to characterise and control the transmission of Enterobacter sakazakii in infant forumula processing facility'. International Journal of Food Microbiology, 116 :73-81. [Details]
Murphy, M., Corcoran, D., Buckley, J. F., O'Mahony, M., Whyte, P.. and Fanning, S. ; (2007) 'Development and application of MLVA to subtype a collection of Listeria monocytogenes'. International Journal of Food Microbiology, 115 :187-194. [Details]
Quinn, T., Bolla, J.-M., Pages, J.-M. and Fanning, S.; (2007) 'Antibiotic resistant Campylobacter: could efflux pump inhibitors control infection?'. Journal of Antimicrobial Chemotherapy, 59 :1230-1236. [Details]
Drudy, D., Harnedy, N., Fanning, S., O'Mahony, R., Baird, A. and Kyne, L.; (2007) 'Isolation and characterisation of toxin A-negative, toxin B-positive C. difficile in Dublin, Ireland'. Clinical Microbiology and Infection, 13 :298-304. [Details]
Mullane, N.R., Iversen, C., Healy, B., Walsh, C., Whyte, P., Wall, P. G., Quinn, T. and Fanning, S. ; (2007) 'Enterobacter sakazakii: an emerging bacterial pathogen with implications for infant health'. Minerva Pediatrics, 59 :137-148. [Details]
Martins, M., Santos, B., Martins, A., Viveiros, M., Couto, I., Cruz, A., The Management Committee Members of Cost B16 of the European Commission/European Science Foundation, Pages, J.-M., Molnar, J., Fanning, S., Cruz, A. and Amaral, L.; (2006) 'An instrument free method for the demonstration of efflux pump activity of bacteria'. In Vivo, 20 :657-664. [Details]
Corcoran, D., Quinn, T., Cotter, L., Fanning, S.; (2006) 'An investigation of the molecular mechanisms contributing to high-level erythromycin resistance in Campylobacter'. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS, 27 :40-45. [Details]
McGill, K., Cowley, D., Moran, L., Scates, P., O'Leary, A., Madden, R. H., Carroll, C., McNamara, E., Moore, J. E., Fanning, S., Collins, J. D. Whyte, P.; (2006) 'Antibiotic resistance of retail food and human Campylobacter isolates on the island of Ireland from 2001-2002'. Epidemiol. Infect, 134 :1282-1291. [Details]
Walsh, C; Duffy, G; O'Mahony, R; Fanning, S; Blair, IS; McDowell, DA; ; (2006) 'Antimicrobial resistance in Irish isolates of verocytotoxicyenic Escherichia coli (E-coli) - VTEC'. International Journal of Food Microbiology, 109 (3):173-178. [Details]
Corcoran, D., Quinn, T., Cotter, L., Whyte, P. & Fanning, S.; (2006) 'Antimicrobial resistance profiling and fla- typing of Irish thermophillic Campylobacter spp. of human and poultry origin'. LETTERS IN APPLIED MICROBIOLOGY, 43 :560-565. [Details]
Mullane, NR; Murray, J; Drudy, D; Prentice, N; Whyte, P; Wall, PG; Parton, A; Fanning, S; ; (2006) 'Detection of Enterobacter sakazakii in dried infant milk formula by cationic-magnetic-bead capture'. Applied and Environmental Microbiology, 72 (9):6325-6330. [Details]
Drudy, D., O'Rourke, M., Murphy, M., Mullane, N.R., O'Mahony, R., Kelly, L., Fischer, M., Sanjaq, S., Shannon, P., Wall, P., O'Mahony, M., Whyte, P.,Fanning, S. C; (2006) 'Characterisation of a collection of Enterobacter sakazakii isolates from environmental and food sources'. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 110 :127-134. [Details]
Miriagou, V; Carattoli, A; Fanning, S; ; (2006) 'Antimicrobial resistance islands: resistance gene clusters in Salmonella chromosome and plasmids'. Microbes and Infection, 8 (7):1923-1930. [Details]
Mullane, N., Drudy, D., Whyte, P., O'Mahony, M., Scannell, A., Wall., P.G., Fanning, S.; (2006) 'Enterobacter sakazakii: Biological properties and significance in dried infant milk formula (IMF) powder'. INTERNATIONAL JOURNAL OF DAIRY TECHNOLOGY, 59 :102-111. [Details]
Moore, JE; Matsuda, M; Sekizuka, T; Fanning, S; Murayama, O; Yokoi, T; Kagawa, S; Nagano, K; Shimura, H; Watabe, M; Nagano, Y; Usui, K; Imamaki, R; Aritomi, T; Harada, C; Iida, H; Mitsuhashi, N; Miyatake, T; Shigematsu, M; Rao, JR; Lowery, CJ; Millar, BC; Dooley, JSG; Rooney, PJ; ; (2006) 'Subspecies characterization of urease-positive thermophilic Campylobacter (UPTC) isolated from shellfish employing modified flagellin (flaA) restriction fragment length polymorphism (RFLP) typing'. Journal of Shellfish Research, 25 (2):625-629. [Details]
Mullane, N.R., Murray, J., Drudy, D., Prentice, N., Whyte, P., Wall, P., Parton, A. Fanning, S.; (2006) 'Quantitative detection of Enterobacter sakazakii in infant milk formula by cationic-magnetic bead capture'. APPLIED ENVIRONMENTAL MICROBIOLOGY, 72 :6325-6330. [Details]
Acke, E; Whyte, P; Jones, BR; McGill, K; Collins, JD; Fanning, S; ; (2006) 'Prevalence of thermophilic Campylobacter species in cats and dogs in two animal shelters in Ireland'. Veterinary Record, 158 (2):51-54. [Details]
Minihan, D., Whyte, P., O'Mahony, M., Cowley, D., O'Halloran, F., Corcoran, D., Fanning, S., Collins, J.D.; (2006) 'Phenotypic and genotypic antimicrobial resistance profiles of Campylobacters from untreated feedlot cattle and their environment'. JOURNAL OF VETERINARY MEDICINE B, 53 :181-187. [Details]
Quinn, T; O'Mahony, R; Baird, AW; Drudy, D; Whyte, P; Fanning, S; ; (2006) 'Multi-drug resistance in Salmonella enterica: Efflux mechanisms and their relationships with the development of chromosomal resistance gene clusters'. Current Drug Targets, 7 (7):849-860. [Details]
Reidy, N., Lennon, G., Fanning, S., Power, E. O'Shea, H.; (2006) 'Molecular characterisation and analysis of bovine rotavirus strains circulating in Ireland 2002-2004'. VETERINARY MICROBIOLOGY, 117 :242-247. [Details]
Payot, S; Bolla, JM; Corcoran, D; Fanning, S; Megraud, F; Zhang, QJ; ; (2006) 'Mechanisms of fluoroquinolone and macrolide resistance in Campylobacter spp'. Microbes and Infection, 8 (7):1967-1971. [Details]
Breathnach, RM; Fanning, S; Mulcahy, G; Bassett, HF; Jones, BR; Daly, P; ; (2006) 'Evaluation of Th-1-like, Th-2-like and immunomodulatory cytokine mRNA expression in the skin of dogs with immunomodulatory-responsive lymphocytic-plasmacytic pododermatitis'. Veterinary Dermatology, 17 (5):313-321. [Details]
Moore, JE; Barton, MD; Blair, IS; Corcoran, D; Dooley, JSG; Fanning, S; Kempf, I; Lastovica, AJ; Lowery, CJ; Matsuda, M; McDowell, DA; McMahon, A; Millar, BC; Rao, JR; Rooney, PJ; Seal, BS; Snelling, WJ; Tolba, O; ; (2006) 'The epidemiology of antibiotic resistance in Campylobacter'. Microbes and Infection, 8 (7):1955-1966. [Details]
Moore, JE; Corcoran, D; Dooley, JSG; Fanning, S; Lucey, B; Matsuda, M; McDowell, DA; Megraud, F; Millar, BC; O'Mahony, R; O'Riordan, L; O'Rourke, M; Rao, JR; Rooney, PJ; Sails, A; Whyte, P; ; (2005) 'Campylobacter'. Veterinary Research, 36 (3):351-382. [Details]
O'Mahony, R; Saugy, M; Leonard, N; Drudy, D; Bradshaw, B; Egan, J; Whyte, P; O'Mahony, M; Wall, P; Fanning, S; ; (2005) 'Antimicrobial resistance in isolates of Salmonella spp. from pigs and the characterization of an S. Infantis gene cassette'. Foodborne Pathogens and Disease, 2 (3):274-281. [Details]
Walsh, C., Duffy, D., Sheridan, J.J., Fanning, S., Blair, I.S., McDowell, D.A. ; (2005) 'Thermal resistance of antibiotic resistant and antibiotic sensitive Salmonella spp. on chicken meat'. JOURNAL OF FOOD SAFETY, 25 :288-302. [Details]
Corcoran, D; Quinn, T; Cotter, L; O'Halloran, F; Fanning, S; ; (2005) 'Characterization of a cmeABC operon in a quinolone-resistant Campylobacter coli isolate of Irish origin'. Microbial Drug Resistance-Mechanisms Epidemiology and Disease, 11 (4):303-308. [Details]
Daly, M; Villa, L; Pezzella, C; Fanning, S; Carattoli, A; ; (2005) 'Comparison of multidrug resistance gene regions between two geographically unrelated Salmonella serotypes'. Journal of Antimicrobial Chemotherapy, 55 (4):558-561. [Details]
Reen, FJ; Boyd, EF; Porwollik, S; Murphy, BP; Gilroy, D; Fanning, S; McClelland, A; ; (2005) 'Genomic comparisons of Salmonella enterica serovar Dublin, Agona, and typhimurium strains recently isolated from milk filters and bovine samples from ireland, using a Salmonella microarray'. Applied and Environmental Microbiology, 71 (3):1616-1625. [Details]
Corcoran, D., Quinn, T., Cotter, L., Fanning, S. ; (2005) 'Relative contribution of target gene mutation and efflux to varying quinolone resistance in Irish Campylobacter isolates'. FEMS MICROBIOLOGY LETTERS, 253 :39-46. [Details]
Murphy, M; Carroll, A; Whyte, P; O'Mahony, M; Anderson, W; McNamara, E; Fanning, S; ; (2005) 'Prevalence and characterization of Escherichia coli O26 and O111 in retail minced beef in Ireland'. Foodborne Pathogens and Disease, 2 (4):357-360. [Details]
Whyte, P; Fanning, S; O'Mahony, M; O'Mahony, R; Drudy, D; ; (2005) 'Public health and economic burden of infectious food-borne diseases in Ireland'. Irish Veterinary Journal, 58 (5):279-283. [Details]
O'Mahony, R; Abbott, Y; Leonard, FC; Markey, BK; Quinn, PJ; Pollock, PJ; Fanning, S; Rossney, AS; ; (2005) 'Methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals and veterinary personnel in Ireland'. Veterinary Microbiology, 109 (3-4):285-296. [Details]
Murphy, BP; Murphy, M; Buckley, JF; Gilroy, D; Rowe, MT; McCleery, D; Fanning, S; ; (2005) 'In-line milk filter analysis: Escherichia coli O157 surveillance of milk production holdings'. International Journal of Hygiene and Environmental Health, 208 (5):407-413. [Details]
Reidy, N., O'Halloran, F., Cryan, B., Fanning, S. O'Shea, H.; (2005) 'Emergence of G9 rotavirus serotypes in Southern Ireland'. REVIEWS IN MEDICAL VIROLOGY, 77 :571-578. [Details]
Abbott, Y; O'Mahony, R; Quinn, PJ; van der Reijden, T; Dijkshoorn, L; Fanning, S; ; (2005) 'Characterization of a 2.6 kbp variable region within a class 1 integron found in an Acinetobacter baumannii strain isolated from a horse'. Journal of Antimicrobial Chemotherapy, 55 (3):367-370. [Details]
Moore. J.E., Murray, L., Fanning, S., Cormican, M., Morgan, B. and Murphy, P.G.; (2003) 'Comparison of phenotypic and genotypic characteristics of Salmonella Bredeney associated with a poultry-related outbreak of gastroenteritis in Northern Ireland'. . [Details]
DeLappe, N., OHalloran, F., Fanning, S., Corbett-Feeney, G., Cheasty, T. and Cormican, M. Shigella sonnei; (2003) 'antimicrobial resistance and genetic diversity in Western Ireland, an area of low incidence of infection'. Journal of Clinical Microbiology, 41 :1919-1924. [Details]
Lucey, B., Cryan, B., OHalloran, F., Wall, P.G., Buckley, T. and Fanning, S.; (2002) 'Shifting trends in antimicrobial susceptibility among Campylobacter spp. in Ireland: emergence of ciprofloxacin resistance'. Veterinary Record, 151 :317-320. [Details]
O Halloran, F., Lynch, M., Cryan, B. and Fanning, S.; (2002) 'Analysis of restriction fragment length polymorphism (RFLP) of the VP-7 encoding genes: fine comparison of Irish and global rotavirus isolates'. Journal of Clinical Microbiology, 40 :524-531. [Details]
Cormican, M., DeLappe, N., OHare, C., Doran, G., Morris, D., Corbett-Feeney, G., Fanning, S., Daly, M., Fitzgerald, M. and Moore, J.; (2002) 'Salmonella enterica serotype Bredeney antimicrobial susceptibility and molecular diversity of isolates from Ireland and Nothern Ireland'. Applied and Environmental Microbiology, 68 :181-186. [Details]

Other Journals

McMahon, B.J. & Fanning, S. (2016) 'One Health Approach to Regulation of Food-Borne Zoonotics' Cattle Practice 24 :29-31. [Details]
Haughton, P.N., Lyng, J., Fanning, S., Whyte, P. (2013) 'Potential of a commercially available water acidification product for reducing Campylobacter in broilers prior to slaughter' British Poultry Science 54 :319-324. [Details]
Murphy, M., Carroll, A., Whyte, P., O'Mahony, M., McNamara, E., Fanning, S.; (2007) 'Development and assessment of a rapid method to detect Escherichia coli O26 and O111 and O157 in retail minced beef' International Journal of hygiene and environmental health 210 :155-161. [Details]
Mullane, N.R., Iversen, C., Healy, B., Walsh, C., Whyte, P., Wall, P.G., Quinn, T., Fanning, S.; (2007) 'Enterobacter sakazakii: an emerging bacterial pathogen with implications for infant health' Minerva Pediatrica 59 :137-148. [Details]
Corcoran, D., Clancy, D., O'Mahony, M., Grant, K., Hyland, E., Shanaghy, N., Whyte, P., McLAuchlin, J., Moloney, A., Fanning, S.; (2006) 'Comparison of Listeria monocytogenes strain types in Irish smoked salmon and other foods' International Journal of hygiene and environmental health 209 :527-534. [Details]
Whyte, P., McGill, K., Kelly, L., Acke, E., Collins, J.D., Fanning, S., Lawlor, A., Jones, B., Madden, R., Moran, L., Scates, P., Carroll, C., O'Leary, A., McNamara, E., Moore, J., Cormican, M.; (2006) 'A comparative study of thermophilic Campylobacter isolates of clinical, food and pet origin' . [Details]

Conference Publications

McMahon, B.J., Arent, Z, Palmer, M.V., Bayles, D., Gilmore, C., McDevitt, A.D., Regan, S., Fanning, S, Yearsley, J. & Nally, J.E. (2015) An invasive mammalian species bearing unwanted gifts The 3rd All Ireland Mammal Symposium University College Cork, , 07-NOV-15 - 08-NOV-15 , pp.32 [Details]
Mousavi, Z.; Fanning, S.; Condell, O., Butler, F. (2016) Quaternary ammonium compounds (QACS) induced inactivation of Pseudomonas spp.: Effect of material surface . In: ICFMH eds. FoodMicro2016 25th International ICFMH Conference Dublin, , 19-JUL-16 - 22-JUL-16 , pp.70-70 Available Online [Details]
Tyuftin, A.A., Bourke, P., Cullen, P.J., Fanning, S., Whyte, P., Bolton, D., Kerry, J.P (2016) Assessment of commercial antimicrobials incorporated into gelatin coatings and applied to conventional heat shrinking material for the prevention of blown pack spoilage in vacuum packaged beef cuts 18th International Conference on Food Safety and Packaging Methods [Details]
Abbott Y., Rossney A., Leonard F., O¿Mahony R., Markey B.K., Quinn P.J., Pollock P.J., and Fanning S. (2005) Comparative features of methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals in Ireland Association of Veterinary Teachers and Research Workers [Details]
Whyte, P,Fanning, S,O'Mahony, M,O'Mahony, R,Drudy, D (2005) IRISH VETERINARY JOURNAL Public health and economic burden of infectious food-borne diseases in Ireland , pp.279-283 [Details]
Mullane, NR,Drudy, D,Whyte, P,O'Mahony, M,Scannell, AGM,Wall, PG,Fanning, S (2006) INTERNATIONAL JOURNAL OF DAIRY TECHNOLOGY Enterobacter sakazakii: biological properties and significance in dried infant milk formula (IMF) powder , pp.102-111 [Details]
Molloy, C,Cagney, C,O'Brien, S,Iversen, C,Fanning, S,Duffy, G (2009) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY Surveillance and characterisation by Pulsed-Field Gel Electrophoresis of Cronobacter spp. in farming and domestic environments, food production animals and retail foods , pp.198-203 [DOI] [Details]
Stoop, B,Lehner, A,Iversen, C,Fanning, S,Stephan, R (2009) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY Development and evaluation of rpoB based PCR systems to differentiate the six proposed species within the genus Cronobacter , pp.165-168 [DOI] [Details]
Healy, B,Huynh, S,Mullane, N,O'Brien, S,Iversen, C,Lehner, A,Stephan, R,Parker, CT,Fanning, S (2009) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY Microarray-based comparative genomic indexing of the Cronobacter genus (Enterobacter sakazakii) , pp.159-164 [DOI] [Details]
Kennedy, CA,Lenahan, M,Ryan, M,Fanning, S,Sheridan, J,McNamara, E,Carroll, A,Sweeney, T (2010) LIVESTOCK SCIENCE Shiga toxin-producing Escherichia coli isolated from human and pig origin induce different gene expression profiles in human Caco-2 epithelial cells , pp.189-191 [DOI] [Details]
Gibbons, J, Boland, F, Egan, J, Fanning, S, Butler, F, Buckley, J, and Leonard, N (2010) Antimicrobial resistance levels in pathogenic E. coli isolates from calf enteritis during the spring calving season Antimicrobial resistance in zoonotic bacteria and foodborne pathogens in animals, humans and the environment Toronto, Canada, , 08-JUN-10 - 11-JUN-10 [Details]
Solomon, K,Murray, S,Scott, L,McDermott, S,Drudy, D,Martin, A,O'Donoghue, C,Skally, M,Burns, K,Fenelon, L,Fitzpatrick, F,Kyne, L,Fanning, S (2011) JOURNAL OF MEDICAL MICROBIOLOGY An investigation of the subtype diversity of clinical isolates of Irish Clostridium difficile ribotypes 027 and 078 by repetitive-extragenic palindromic PCR , pp.1080-1087 [DOI] [Details]
Burns A., Shore A., Gibbons J., McManus B., Abbott Y., Markey B., Murphy A., Coleman D., Fanning S., Gutierrez M., Egan J. and Leonard F (2011) Methicillin resistant Staphylococcus aureus in a pig herd in Ireland Association of Veterinary Teachers and Research Workers, Scientific Meeting [Details]
Burns A., Gibbons J., Markey B., Fanning S., Abbott Y., Gutierrez M., Leonard F. (2012) A longitudinal study of Staphylococcus aureus colonisation in pigs in Ireland Society For General Microbiology, Irish Branch, Spring Meeting [Details]
Haughton, P., Lyng, J., Cronin, D., Fanning, S., Whyte, P (2012) The effectiveness of 395±nm light for the inactivation of Campylobacter and the decontamination of raw chicken and contact surfaces International Conference for Bio and Food Electrotechnologies [Details]
Burns A., Shore A., Gibbons J., McManus B., Abbott Y., Markey B., Murphy A., Coleman D., Fanning S., Gutierrez M., Egan J., Leonard F.. (2013) Methicillin-resistant and susceptible Staphylococcus aureus in pig herds in Ireland Society for General Microbiology, Dublin [Details]
Reid, R., Fanning, S., Whyte, P., Bolton, D. (2014) (viii) Investigation of hot boning of beef carcases and the growth of spoilage bacteria and blown pack spoilage Clostridium species Institute of Food Science & Technology of Ireland 43rd Annual Food Research Conference [Details]
Carroll, D., Fanning, S., Wang, J. & McMahon, B.J. (2014) Sylvatic antimicrobial resistance Host Pathogen Interactions: from animals to humans and back again. Society for General Microbiology , 20-OCT-14 - 21-OCT-14 , pp.22-22 [Details]
Reid, R., Lindqvist, R., Fanning, S., Whyte, P., Kerry, J., Bolton, D. (2015) The microbiology of beef during chilling: do the observations fit the predictions? European Food Safety Authority¿s 2nd Scientific Conference ¿Shaping the Future of Food Safety, Together [Details]
McMahon, B.J., Arent, Z, Palmer, M.V., Gilmore, C., McDevitt, A.D., Regan, S., Fanning, S, Yearsley, J. & Nally, JE. (2015) An invasive mammalian species bearing unwanted gifts: One Health implications 3rd International One Health Congress Amsterdam, The Netherlands, , 15-MAR-15 - 18-MAR-15 [Details]
Reid, R., Fanning, S., Whyte, P., Kerry, J., Bolton, D. (2016) An investigation of the time to onset of blown pack spoilage in hot and conventionally boned beef FoodMicro 2016 (25th International ICFMH Conference) [Details]
Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A., Fanning, S., Whyte, P.; (2010) Efficacy of continuous ultraviolet light for the microbiological decontamination of chicken, packaging materials and contact surfaces uropean Federation of Food Science and Technology (EFFoST) Annual Meeting [Details]
Sherry, F, A, Ellis, A, Jacquier, JC, O'Sullivan, M, O'Riordan, ED. and Fanning, S.; (2010) Effect of prebiotic strains on pathogens in companion animals EFFoST Annual Meeting 2010, Dublin [Details]
Burns A., Gibbons J., Markey B., Abbott Y., Fanning S., Gutierrez M., Egan J. and Leonard F. ; (2010) Colonisation patterns of Staphylococcus aureus and methicillin-resistant coagulase negative staphylococci in a pig herd in Ireland Association of Veterinary Teachers and Research Workers, Scientific Meeting, Canal Court Hotel, Newry, October 1st [Details]
Gibbons J., Burns A., Markey B., Egan J., Gutierrez M., Abbott Y., Fanning S. and Leonard F. ; (2010) Experimental colonisation and transmission studies of methicillin-resistant Staphylococcus aureus (MRSA) in Irish pigs Association of Veterinary Teachers and Research Workers, Scientific Meeting, Canal Court Hotel, Newry, October 1st [Details]
Whyte, P., Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A., Fanning, S.; (2011) Reducing Campylobacter in plant using novel physical interventions FIRM Relay Dissemination conference Strategies to control Campylobacter in poultry [Details]
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P.; (2011) Effect of a commercially available water acidification product (PWT) on the survival of Campylobacter spp. in water and broiler cecal contents 16th International Workshop on Campylobacter, Helicobacter and Related Organisms, Vancouver, Canada [Details]
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P. ; (2011) Combination of ultrasonication or thermosonication and ultraviolet light for the decontamination of raw chicken 16th International Workshop on Campylobacter, Helicobacter and Related Organisms, Vancouver, Canada [Details]
Burns A., Shore A., Gibbons J., McManus B., Abbott Y., Markey B., Murphy A., Coleman D., Fanning S., Gutierrez M., Egan J. and Leonard F. ; (2011) Methicillin resistant Staphylococcus aureus in a pig herd in Ireland ASM-ESCMID Conference on Methicillin-resistant Staphylococci in Animals: Veterinary and Public Health Implications Washington 8th to 11th September [Details]
Gibbons J., Burns A., Markey B., Jahns H., Abbott Y., Egan J., Gutierrez M., Fanning J., Fanning S. and Leonard F. ; (2011) Investigation of MRSA transmission between pigs and the environment following intra-nasal inoculation Ninth International Conference on the Epidemiology and Control of Biological, Chemical and Physical Hazards in Pigs and Pork (SafePork) Conference [Details]
Haughton, P.N., Lyng, J.G., Cronin, D., Fanning, S., Whyte, P. (2012) Susceptibility of Campylobacter to high intensity near ultraviolet/visible 395 ± 5 nm light and its effectiveness for the decontamination of raw chicken and contact surfaces IFT Annual Institute of Food and Technology Conference [Details]
Haughton, P., Lyng, J., Cronin, D., Fanning, S., Whyte, P (2012) The effectiveness of 395±nm light for the inactivation of Campylobacter and the decontamination of raw chicken and contact surfaces International Conference for Bio and Food Electrotechnologies [Details]
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P. (2012) Susceptibility of Campylobacter to high intensity near ultraviolet/visible 395 ± 5 nm light and its effectiveness for decontaminating raw chicken and contact surfaces Annual Conference of the International Association of Food Protection [Details]
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P (2012) Effect of crust freezing applied alone and in combination with ultraviolet light on the survival of Campylobacter on raw chicken Annual Conference of the International Association of Food Protection [Details]
Abbott, Y., Rossney, A.S., Leonard, F.C., O'Mahony, R., Markey, B.K., Quinn, P.J., Pollock, P. & Fanning, S.; Comparative features of methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals in Ireland The Asscoiation of Veterinary Teachers and Research Workers (AVTRW) [Details]
Harnedy, N., Drudy D., Fanning, S., O'Mahony, R. & Kyne L.; Management of an outbreak of Clostridium difficile in a Dublin teaching hospital The Irish Gerontology Society Scientific meeting Ireland, [Details]
Drudy D., Harnedy, N., Fanning, S., O'Mahony, R., Baird, A. & Kyne L.; Antibiotic Resistant Toxin A Negative Toxin B Positive Clostridium difficile In Dublin Ireland The Irish Gerontology Society Scientific meeting Ireland, [Details]
Martin AJ 1,2, Solomon K 1, O¿Donoghue C., Fenelon L., Fitzpatrick F., Fanning S., Murray S., Chen X., Kelly C.P. and Kyne L.; (2010) Clinical outcomes and immune response associated with Clostridium difficile ribotype 027 infection 3rd International Clostridium difficile symposium [Details]
Haughton, P., Lyng, J.G., Morgan, D.J., Cronin, D.A. Fanning, S., Whyte, P.; (2010) Efficacy of continuous ultraviolet light for the microbiological decontamination of chicken, packaging materials and contact surfaces European Federation of Food Science and Technology (EFFoST) [Details]
Haughton, P., Lyng, J.G., Morgan, D.J., Cronin, D.A., Noci, F., Fanning, S., Whyte, P.; (2010) Efficacy of high intensity light for the microbiological decontamination of poultry packaging and surfaces International Association for Food Protection Sixth European Symposium on Food Safety [Details]
K. Solomon , S. Fanning, S. Murray, L. Scott, S. McDermott, D. Drudy, A. Martin, C. O¿Donoghue, M. Skally, K. Burns, L. Fenelon, F. Fitzpatrick, and L. Kyne ; (2010) sub-type diversity of clinical isolates of Clostridium difficile ribotypes 027 and 078 3rd International Clostridium difficile Symposium [Details]
Haughton, P.N., Lyng, J., Morgan, D.J., Cronin, D.A., Fanning, S., Whyte, P.; (2009) Impact of novel food processing technologies on Campylobacter spp Centre for Foodborne Zoonomics Research Network International Conference [Details]
Acke, E., McGill, K., Jones, B., Fanning, S., Whyte, P; (2009) The role of pets as a reservoir for human campylobacteriosis American College of Veterinary Internal Medicine Forum and Canadian Veterinary Medical Association Convention, Montreal Quebec [Details]
Murphy, M., Minihan, D., O¿Mahony, M., Fanning, S. Buckley, J., Whyte, P; (2009) Multiple-locus variable number of tandem repeat analysis (MLVA) of irish verocytotoxigenic Esherichia coli O157 from feedlot cattle: uncovering strain dissemination routes 5th safeFood (Food Safety Promotion Board)0 VTEC Research Network annual meeting [Details]
Solomon K., Martin A., O'Donoghue C., Murray S, Fanning S and Kyne L.; (2009) Reduced Sensitivity of Clostridium difficile to metronidazole and implications for treatment failure 49th Interscience Conference on Antimicrobial Agents and Chemotherapy (ICAAC) [Details]
Warby J.M.., Walsh C., Fanning, S., Scannell, A.G.M. ; (2008) Thermal Death Kinetics of Enterobacter sakazakii at 60˚C in reconstituted Infant Formula Milk 21st International ICFMH Symposium, Food Micro 2008, Aberdeen, Scotland [Details]
Warby J.M., Mullane, N.R., N McNamee, C., Byrne, F., Walsh, C., Fanning, S., Lyng, J., Scannell, A.G.M. ; (2008) Validation of D-value Determination methodology to be used to screen environmental and clinical Enterobacter sakazakii 21st International ICFMH Symposium, Food Micro 2008, Aberdeen, Scotland [Details]
Logan, A., Thomas, K., McCann, M., O¿Brien, S., Duffy, G., Fanning, S., Whyte, P; (2008) Surveillance of emergent strains of verocytotoxigenic Escherichia coli (O157, O145, O103, O26 and O111) in Irish beef cattle Pathogenic E. coli0 Network (PEN), E. coli0 : Pathogenicity, Virulence and emerging pathogenic strains [Details]
Warby J.M. Walsh, C., Fanning, S., Scannell, A.G.M. ; (2008) Osmo-tolerance of Enterobacter sakazakii Strains using Phenotype Micro-Array Analysis 21st International ICFMH Symposium, Food Micro 2008, Aberdeen, Scotland [Details]
Murphy, M., Corcoran, D., Buckley, J.F., O¿Mahony, M., Whyte, P., Fanning, S.; (2007) Development and application of multiple-locus variable number of tandem repeat analysis (MLVA) to subtype a collection of Listeria moncytogenes 3rd Med-Vet-Net Annual Scientific Meeting, Barga, Italy [Details]
Logan, A., Thomas, K., O¿Brien, S., McCann, M., Duffy, G., Fanning, S., Whyte, P; (2007) Surveillance of emergent strains of verocytotoxigenic Escherichia coli (O157, O145, O103, O26 and O111) in Irish beef cattle 4th safeFood (Food Safety Promotion Board)0 VTEC Research Network annual meeting [Details]
Mullane, N., Ryan, M., Iversen, C., Murphy, M., O¿Gaora, P., Quinn, T., Whyte, P., Wall., P., Fanning, S; (2007) Development of Multiple-Locus Variable Number Tandem Repeat Analysis for the Molecular Subtyping of Enterobacter sakazakii International Association for Food Protection’s Third European Symposium on Food Safety, Rome Italy [Details]
Mullane, N., Whyte, P., Wall, P.G., Quinn, T., Fanning, S; (2007) Application of Pulsed-Field Gel Electrophoresis to characterize and trace the prevalence of Enterobacter sakazakii in an infant formula processing facility International Association for Food Protection’s Third European Symposium on Food Safety, Rome Italy [Details]
O¿Regan, E., Meade, J., Duffy, G., Barry, T., Whyte, P., Fanning, S; (2007) A rapid detection method for multiple Salmonella serotypes International Association for Food Protection’s Third European Symposium on Food Safety, Rome, Italy [Details]
Zintl, A., Proctor, A., Read, C., DeWaal, T., Fanning S. and Mulcahy, G. ; (2007) What we know about the occurrence of Cryptosporidium in humans and domestic animals in Ireland Cryptosporidium and other protozoan enteric pathogens in the Irish Aquatic Environment’ workshop, Sligo Institute of Technology, Ireland and John Hopkins Bloomberg School of Public Health, Baltimore, USA [Details]
Duggan, S.J., Prendergast, D.M., Leonard, N., Mannion, C., Butler, F., Fanning, S. and Duffy, G. ; (2007) Tracking of Salmonella positive pigs from farm to fork in the Republic of Ireland Safepork 2007, 7th international symposium on the epidemiology and control of foodborne pathogens in pork Verona, Italy, , 09-MAY-07 - 11-MAY-07 , pp.91-94 [Details]
Mullane, N.R., Whyte, P., Wall, P.G. & Fanning, S.; (2006) Application of pulsed field gel electrophoresis to characterize and control the transmission of Enterobacter sakazakii in an infant formula processing facility 06th General Meeting of the American Society for Microbiology Orlando, Florida, , 21-MAY-06 - 25-MAY-06 [Details]
Zintl, A., DeWaal, T., Neville, D., Mulcahy, G., Maguire, D., Leggett, B. & Fanning, S.; (2006) Crytosporidium in pigs in Ireland COST 857 Workshop Dresden, Germany, , 17-MAR-06 - 19-MAR-06 [Details]
Acke, E., Whyte, P., Jones, B.R., McGill, K., Golden, O., Fanning, S.; (2006) Thermophilic Campylobacter species in Irish household and shelter cats and dogs British Small Animal Veterinary Association Cogress , 20-APR-06 - 23-APR-06 [Details]
Acke, E., Whyte, P., Jones, B.R., McGill, K., Golden, O. Fanning, S; (2006) Thermophilic Campylobacter species in Irish household and shelter cats and dogs British Small Animal Veterinary Association Cogress , 20-APR-06 - 23-APR-06 [Details]
Mullane, N.R., Whyte, P., Wall, P.G. Fanning, S.; (2006) Application of pulsed field gel electrophoresis to characterize and control the transmission of Enterobacter sakazakii in an infant formula processing facility 06th General Meeting of the American Society for Microbiology , 21-MAY-06 - 25-MAY-06 [Details]
Acke, E., Whyte, P., Jones, B.R., McGill, K., Golden, O. & Fanning, S.; (2006) Thermophilic Campylobacter species in Irish household and shelter cats and dogs British Small Animal Veterinary Association Cogress Bermingham, UK, , 20-APR-06 - 23-APR-06 [Details]
Zintl, A., DeWaal, T., Neville, D., Mulcahy, G., Maguire, D., Leggett, B. Fanning, S.; (2006) Crytosporidium in pigs in Ireland COST 857 Workshop , 17-MAY-06 - 19-MAY-06 [Details]
Fanning S, Drudy D, O'Rourke M, Murphy M, Mullane NR, O'Mahony R, Kelly L, Fischer M, Sanjaq S, Shannon P, Wall P, O'Mahony M, Whyte P, ; (2006) International journal of food microbiology Characterization of a collection of Enterobacter sakazakii isolates from environmental and food sources , pp.127-134 [DOI] [Details]
Zintl, A., Neville, D., Mulcahy, G., Maguire, D., Fanning, S. and DeWaal, T.; (2006) Crytosporidium in pigs in Ireland 3rd Annual Workshop, COST ACTION 857, Dresden, Germany [Details]
Logan, A., O¿Brien, S., Fanning, S., Whyte, P; (2006) Optimisation of enrichment methods for the detection and isolation of Escherichia coli O157 and non-O157 serotypes 3rd safeFood0 (Food Safety Promotion Board) VTEC Network Annual Meeting [Details]
Abbott, Y., Rossney, A.S., Leonard, F.C., O'Mahony, R., Markey, B.K., Quinn, P.J., Pollock, P. & Fanning, S.; (2006) Methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals in Ireland The Association of Veterinary Teachers and Research Workers (AVTRW) , 15-MAY-06 - 23-MAY-06 [Details]
Abbott, Y., Rossney, A.S., Leonard, F.C., O'Mahony, R., Markey, B.K., Quinn, P.J., Pollock, P. & Fanning, S.; (2006) Comparative features of methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals in Ireland The Association of Veterinary Teachers and Research Workers (AVTRW) , 12-DEC-06 [Details]
Drudy, D., Narndy, N., Fanning, S., O'Mahony, R., Baird, A. Kyne, L.; (2005) Toxin Variant Clostridium difficile in an Irish teaching hospital The Conway Institute-Festival of Research , 10-JUN-05 - 11-JUN-05 [Details]
Duggan, S., Prendergast, D., Butler, F., Cummins, E., Nally, P., Leonard, N., Mannion, C., Fanning, S., Madden, B., Naughton, P., & Duffy, G.; (2005) Occurance of salmonella on pork on the island of Ireland and an assessment of the risk factors contributing to its transmission The science of food safety and Nutrition , 01-DEC-05 - 02-DEC-05 [Details]
Scates, P., Madden, R.H., Moran, L., Carroll, C., O'Leary, A., Fanning, S., Collins, J.D., McNamara, E., Moore, J.E., McGill, K., Cowley, D., Whyte, P.; (2005) Amplified fragment length polymorphism (AFLP) typing of Campylobacter spp. isolated from retail foods from Ireland XIII International Congress on Campylobacter, Helicobacter and Related Organisms , 04-SEP-05 - 08-SEP-05 [Details]
Drudy, D., Narndy, N., Fanning, S., O'Mahony, R., Baird, A. & Kyne, L.; (2005) Toxin Variant Clostridium difficile in an Irish teaching hospital The Conway Institute-Festival of Research University College Dublin, , 10-JUN-05 - 11-JUN-05 [Details]
Fanning S, O'Mahony R, Saugy M, Leonard N, Drudy D, Bradshaw B, Egan J, Whyte P, O'Mahony M, Wall P, ; (2005) Foodborne pathogens and disease Antimicrobial resistance in isolates of Salmonella spp. from pigs and the characterization of an S. Infantis gene cassette , pp.274-281 [DOI] [Details]
Corcoran, D., Quinn, T., Cotter, L., Baird, A. Fanning, S.; (2005) Involvement of efflux activity and target gene mutations in fluoroquinolone and erythromycin resistant in Irish human and poultry Campylobacter coli and Campylobacter jejuni isolates The 1st symposium on Antimicrobial Resistance in Animals and the Environment , 23-FEB-05 - 25-FEB-05 [Details]
Mullane, N. Fanning, S.; (2006) Use of pulsed-field gel electrophoresis to characterise environmental isolates of Enterobacter sakazakii from a powdered infant milk formula manufacturing facility The American Society for Microbiology (ASM) Annual Scientific Meeting , 02-MAY-06 - 02-MAY-06 [Details]
Drudy, D., Quinn, T., O'Mahony, R., Kyne, L., O'Gaora, P. & Fanning, S.; Fluoroquinolone Resistance in Toxin A negative Toxin B positive Clostridium difficile associated with a novel mutation in gyrB Clostpath-2006 Nottingham United Kingdom, [Details]
Abbott, Y., Rossney, A.S., Leonard, F.C., O'Mahony, R., Markey, B.K., Quinn, P.J., Pollock, P. Fanning, S.; (2005) Comparative features of methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals in Ireland Asscoiation of Veterinary Teachers and Research Workers (AVTRW), March 2005 [Details]
Harnedy, N., Drudy D., Fanning, S., O'Mahony, R. Kyne L.; Management of an outbreak of Clostridium difficile in a Dublin teaching hospital The Irish Gerontology Society Scientific meeting, September 2005 [Details]
Drudy D., Harnedy, N., Fanning, S., O'Mahony, R., Baird, A. Kyne L.; Antibiotic Resistant Toxin A Negative Toxin B Positive Clostridium difficile In Dublin Ireland The Irish Gerontology Society Scientific meeting, September 2005 [Details]
Abbott, Y., Rossney, A.S., Leonard, F.C., O'Mahony, R., Markey, B.K., Quinn, P.J., Pollock, P. Fanning, S.; (2006) Methicillin-resistant Staphylococcus aureus (MRSA) isolated from animals in Ireland The Association of Veterinary Teachers and Research Workers (AVTRW) , 23-MAY-06 - 25-MAY-06 [Details]
Drudy, D., Quinn, T., O'Mahony, R., Kyne, L. & Fanning, S.; (2006) Fluoroquinolone resistance in Toxin A nagative Toxin B positive Clostridium difficile associated with a novel mutation in gyrB The American Society for Microbiology (ASM) Annual Scientific Meeting Orlando, Florida, USA, , 02-MAY-06 - 02-MAY-06 [Details]
Murphy, B.P., O'Mahony , E., Buckley, J.F. Fanning, S.; (2006) Prevalence of emerging pathogens in Irish dairy herds The Safefood: All-Island Infectious Intestinal Disease Conference, sharing strategies for control and prevention , 18-JAN-06 - 19-JAN-06 [Details]
Duggan, S., Prendergast, D., Butler, F., Cummins, E., Nally, P. Leonard, N., Mannion, C., Fanning, S., Madden B., Naughton P. Duffy, G.; (2005) Occurrence of salmonella on pork on the Island of Ireland and an assessment of the risk factors contributing to its transmission The Science of Food and Nutrition Croke Park Stadium, Dublin, Ireland, , 01-DEC-05 - 02-DEC-05 , pp.130 [Details]
Santos, B., Martins, M., Viveiros, M., Couto, I., Pages, J.-M., Molnar, J., Fanning, S., Cruz, A. Amaral, L.; (2005) An instrument free method for precise demonstration of efflux pump activity of bacteria The Micro-Biotec-2005 Congress , 30-NOV-05 - 03-DEC-05 [Details]
Murphy, M., Minihan, D., Buckley, J.F., Whyte, P., O'Mahony, M, Fanning, S.; (2005) Multi-locus variable number of tandem repeat analysis (MLVA) of E. coli isolates Food Safety Promotion Board VTEC Research Network Conference , 23-NOV-05 - 23-NOV-05 [Details]
Scates, P., Madden, R.H., Moran, L., Carroll, C., O'Leary, A., Fanning, S., Collins, J.D., McNamara, E., Moore, J.E., McGill, K., Cowley, D., Whyte, P.; (2005) Amplified fragment length polymorphism (AFLP) typing of Campylobacter spp. isolated from retail foods from Ireland XIII International Congress on Campylobacter, Helicobacter and Related Organisms Gold Coast, Australia, , 04-SEP-05 - 08-SEP-05 [Details]
Corcoran, D., Quinn, T., Cotter, L., O'Halloran Fanning, S.; (2005) Characterisation of a cmeABC operon in a quinolone resistant Campylobacter coli isolate of Irish origin The Gordon Research Conference, on 'Multidrug Efflux Systems' , 28-AUG-05 - 02-SEP-05 [Details]
Drudy, D., Narndy, N., Fanning, S., O'Mahony, R., Baird, A. Kyne, L.; (2005) High Prevalence of toxin A-negative, toxin B-positive Clostridium difficile in Dublin, Ireland The Irish Society of Gastroenterology Ireland, , 10-JUN-05 - 11-JUN-05 [Details]

Published Reports

34. Whyte, P., McGill, K., Kelly, L., Acke, E., Collins, J.D., Fanning, S., Lawlor, A., Jones, B., Madden, R., Moran, L., Scates, P., Carroll, C., O¿Leary, A., McNamara, E., Moore, J., Cormican, M; (2006) A comparative study of thermophilic Campylobacter isolates of clinical, food and pet origin. Food Safety Promotion Board Report. Food Safety Promotion Board, Dublin. Available Online [Details]
 

Editorial

Iversen, C,Fanning, S; (2009) Introductory note to the Cronobacter special issue. Editorial [DOI] [Details]
       

Reports

Whyte, P., McGill., K., Kelly, L., Acke, E., Collins, J.D., Fanning, S., Lawlor, A., Jones, B., Madden, R., Moran, L., Scates, P., Carroll, C., O'Leary, A., McNamara, E., Moore, J.E., Cormican, M.; (2006) A comparative study of thermophilic Campylobacter isolates of clinical, food and pet origin. Reports Available Online [Details]
Carroll, A., Murphy, M., Mc Namara, E., Fanning, S., Whyte, P.; (2004) A surveillance study of E. coli O111 and O26 in minced beef on retail sale in Ireland. Reports Available Online [Details]
       

Abstract

O'Mahony, E,Patriarchi, A,Maunsell, B,Buckley, JF,O'Sullivan, MB,Fanning, S,Bolton, DJ (2007) Distribution of Campylobacter in a subset of intensive poultry flocks on the island of Ireland: Identification of possible factors affecting that distribution. Abstract [Details]
Patriarchi, A,Maunsell, B,Fanning, S,Bolton, DJ (2007) An investigation into the sources and distribution of Campylobacter in chicken broiler flocks on the island of Ireland. Abstract [Details]
Amaral, L,Spengler, G,Viveiros, M,Rodrigues, L,Martins, A,Couto, I,Martins, M,Fanning, S,Pages, JM,Molnar, J (2008) ASSESSMENT AND COMPARISON OF EFFLUX PUMPS OF CANCER CELLS AND MDR BACTERIA UNDER PHYSIOLOGICAL CONDITIONS BY A REAL-TIME SEMI-AUTOMATED SYSTEM. Abstract [Details]
       

Reviews

Moore, JE,Corcoran, D,Dooley, JSG,Fanning, S,Lucey, B,Matsuda, M,McDowell, DA,Megraud, F,Millar, BC,O'Mahony, R,O'Riordan, L,O'Rourke, M,Rao, JR,Rooney, PJ,Sails, A,Whyte, P (2005) Campylobacter. Reviews [DOI] [Details]
Quinn, T,O'Mahony, R,Baird, AW,Drudy, D,Whyte, P,Fanning, S (2006) Multi-drug resistance in Salmonella enterica: Efflux mechanisms and their relationships with the development of chromosomal resistance gene clusters. Reviews [Details]
Moore, JE,Barton, MD,Blair, IS,Corcoran, D,Dooley, JSG,Fanning, S,Kempf, I,Lastovica, AJ,Lowery, CJ,Matsuda, M,McDowell, DA,McMahon, A,Millar, BC,Rao, JR,Rooney, PJ,Seal, BS,Snelling, WJ,Tolba, O (2006) The epidemiology of antibiotic resistance in Campylobacter. Reviews [DOI] [Details]
Breathnach, RM,Fanning, S,Mulcahy, G,Bassett, HF,Jones, BR (2008) Canine pododermatitis and idiopathic disease. Reviews [DOI] [Details]
Walsh, C,Fanning, S (2008) Antimicrobial Resistance in Foodborne Pathogens - A Cause for Concern?. Reviews [Details]
Martins, M,Dastidar, SG,Fanning, S,Kristiansen, JE,Molnar, J,Pages, JM,Schelz, Z,Spengler, G,Viveiros, M,Amaral, L (2008) Potential role of non-antibiotics (helper compounds) in the treatment of multidrug-resistant Gram-negative infections: mechanisms for their direct and indirect activities. Reviews [DOI] [Details]
Amaral, L,Martins, A,Molnar, J,Kristiansen, JE,Martins, M,Viveiros, M,Rodrigues, L,Spengler, G,Couto, I,Ramos, J,Dastidar, S,Fanning, S,Mccusker, M,Pages, JM (2010) Phenothiazines, Bacterial Efflux Pumps and Targeting the Macrophage for Enhanced Killing of Intracellular XDRTB. Reviews [Details]
Healy, B,Cooney, S,O'Brien, S,Iversen, C,Whyte, P,Nally, J,Callanan, JJ,Fanning, S (2010) Cronobacter (Enterobacter sakazakii): An Opportunistic Foodborne Pathogen. Reviews [DOI] [Details]
Pages, JM,Amaral, L,Fanning, S (2011) An Original Deal for New Molecule: Reversal of Efflux Pump Activity, A Rational Strategy to Combat Gram-Negative Resistant Bacteria. Reviews [Details]
Yan, QQ,Condell, O,Power, K,Butler, F,Tall, BD,Fanning, S (2012) Cronobacter species (formerly known as Enterobacter sakazakii) in powdered infant formula: a review of our current understanding of the biology of this bacterium. Reviews [DOI] [Details]
Drummond, N,Murphy, BP,Ringwood, T,Prentice, MB,Buckley, JF,Fanning, S (2012) Yersinia Enterocolitica: A Brief Review of the Issues Relating to the Zoonotic Pathogen, Public Health Challenges, and the Pork Production Chain. Reviews [DOI] [Details]
                                             

Articles

McMahon, B.J. & Fanning, S. (2016) One Health Approach to Regulation of Food-Borne Zoonotics. Articles [Details]
   

Letters

Lucey, B,O'Halloran, F,Wall, P,Fanning, S (2003) Ciprofloxacin-resistant Campylobacter. Letters [Details]
Moore, JE,Goldsmith, CE,Elborn, JS,Murphy, PG,Gilligan, PH,Fanning, S,Hogg, G (2003) Towards Molecular esperanto or the tower of babel? (The need for harmonization of techniques for genotyping clinical isolates of Pseudomonas aeruginosa isolated from patients with cystic fibrosis). Letters [DOI] [Details]
Drudy, D,Kyne, L,O'Mahony, R,Fanning, S (2007) gyrA mutations in fluoroquinolone-resistant Clostridium difficile PCR-027. Letters [Details]
Drudy, D,Goorhuis, B,Bakker, D,Kyne, L,van den Berg, R,Fenelon, L,Fanning, S,Kuijper, EJ (2008) Clindamycin-resistant clone of Clostridium difficile PCR ribotype 027, Europe. Letters [DOI] [Details]
O'Donoghue, C,Duggan, J,Kyne, L,Iversen, C,Fanning, S,Power, D (2012) Polypharmacy Is an Independent Risk Factor for Oropharyngeal Isolation of Gram-Negative Bacilli in Older Persons. Letters [DOI] [Details]
                       

Research

Research Interests

Research Projects

Sponsor : Dept. Agriculture, Food and the Marine (DAFM)
Title : An investigation of Verocytotoxigenic E. coli super-shedding in beef and dairy cattle and the factors underpinning human virulence potential and strain emergence as a result of vt phage transduction
Start Date / End Date : 01-DEC-12 / 30-NOV-16
Sponsor : Enterprise Ireland (EI)
Title : A study of the ecology of drug-resistant bacteria and the potential for transfer of antimicrobial resistance markers via the food chain - development of strategic control measure
Start Date / End Date : 01-JAN-13 / 05-FEB-13
Sponsor : University College Dublin Foundation Ltd.
Title : Surveillance and characterisation of bacterial antimicrobial resistance-encoding determinants from food-producting animals
Start Date / End Date : 01-JAN-13 / 02-FEB-16
Sponsor : Enterprise Ireland (EI)
CEBEC GROUP Ltd
Title : Bio-Delivery
Start Date / End Date : 26-JUN-13 / 14-MAR-14
Sponsor : Innovative Medicines Initiative Joint Undertaking (IMI JU)
Title : Molecular basis of the outer membrane permeability (Translocation)
Start Date / End Date : 01-JAN-13 / 31-DEC-17
Sponsor : Dept. Agriculture, Food and the Marine (DAFM)
Title : Systems microbiology applied to the reduction and control of bacterial transmission in the powdered infant formula (PIF) production environment ¿towards scientifically validated improvements in food safety
Start Date / End Date : 01-DEC-13 / 30-NOV-17
Sponsor : Dept. Agriculture, Food and the Marine (DAFM)
Title : Translating fundamental research on Listeria monoctogenes for the benefit of multi-sectoral ready-to-eat food industry (Translisteria)
Start Date / End Date : 01-NOV-12 / 31-OCT-16
Sponsor : Dept. Agriculture, Food and the Marine (DAFM)
Title : Packaging and Chilling Technologies to Enhance Meat Quality and Safety (Pac-Chill-Tech)
Start Date / End Date : 01-JUN-13 / 31-JAN-17
Sponsor : Teagasc
Title : Packaging and Chilling Technologies to Enhance Meat Quality and Safety
Start Date / End Date : 02-SEP-13 / 23-SEP-16
Sponsor : Teagasc
Title : Persistence and control of pathogenic E. coli in the primary production environment
Start Date / End Date : 01-OCT-14 / 30-SEP-18
Sponsor : Pfizer Ltd., Ireland
Title : Comparison of Cronobacter isolation and identification techniques
Start Date / End Date : 18-FEB-13 / 31-DEC-13
Sponsor : Enterprise Ireland (EI)
Title : Dairy Processing Technology Centre
Start Date / End Date : 04-DEC-14 / 03-DEC-19
Sponsor : Irish Research Council (IRC)
Title : Unravelling food derived bioactive peptides with dual functionality of anti-microbial and immunomodulating capabilities
Start Date / End Date : 01-OCT-15 / 30-SEP-19
Sponsor : University College Dublin (UCD)
Title : Research Support
Start Date / End Date : 01-APR-15 / 31-MAR-18
Sponsor : Enterprise Ireland (EI)
Mead Johnson & Company, LLC
Dairygold Food Ingredients Ltd
Glanbia Ingredients Ireland Ltd
Dawn Farm Foods Ltd.
Creme Software Ltd
Kerry Ingredients and Flavours Ltd
Nutrition Supplies and Services (Ireland) Ltd
Title : Origin Green Micro Surveillance - Protecting the Next Generation
Start Date / End Date : 01-OCT-15 / 30-SEP-18
Sponsor : Dept. Agriculture, Food and the Marine (DAFM)
Title : Surveillance of Verocytotoxigenic E. Coli in Ireland: A One Health Approach
Start Date / End Date : 01-NOV-16 / 31-OCT-20
Sponsor : University College Dublin (UCD)
Title : OBRSS Research Support Scheme
Start Date / End Date : 01-NOV-16 / 31-OCT-19
Sponsor : University College Dublin (UCD)
Title : 2016 Internal funding scheme
Start Date / End Date : 18-NOV-16 / 17-NOV-19
Sponsor : Teagasc
Title : Surveillance of Verocytotoxigenic E. Coli in Ireland: A One Health Approach
Start Date / End Date : 01-OCT-17 / 30-SEP-21
Sponsor : Carbery Milk Products
Title : To determine the potential antimicrobial activity of Carbery¿s hydrolysates against pathogenic bacteria that are of greatest concern to infant health
Start Date / End Date : 23-JAN-17 / 22-APR-17
Sponsor : Almarai Company
Title : To fully characterize 50 strains of Salmonella enterica using the S.A.F.E. whole genome sequencing platform at UCD
Start Date / End Date : 13-MAR-17 / 16-APR-17
Sponsor : Nutricia Infant Nutrition Ltd
Title : RDC Management and Control of Enterobacter sakazakii in a powdered infant formula (PIF) facility
Start Date / End Date : 01-SEP-08 / 30-AUG-11
Sponsor : Dawn Farm Foods Ltd.
Title : Food Safety
Start Date / End Date : 01-APR-10 / 31-MAR-12
Sponsor : Irish Research Council for Science Engineering and Technology (IRCSET)
Title : Understanding the role of exopolysaccharide and RND efflux pump activity in Cronobacter spp.: A description of how these genetic loci contribute to persistance and survival
Start Date / End Date : 01-NOV-10 / 31-OCT-13
Sponsor : Unilever UK Central Resources Ltd.
Title : Science and Technology - Microbial resistance. Identification of molecular moieties involved in resistance of Enterobacteriaceae to low water activity conditions
Start Date / End Date : 01-OCT-10 / 31-JUL-14
Sponsor : bioMerieux SA
Title : Evaluation of the bioMerieux Vidas system for the detection of Cronobacter spp.
Start Date / End Date : 01-OCT-10 / 30-SEP-12
Sponsor : University College Dublin Foundation Ltd.
Title : Moy Park Newman Fellowship in Food Safety
Start Date / End Date : 01-SEP-11 / 28-FEB-14
Sponsor : European Space Agency (ESA)
Title : TAS Microbial Risk Assessment in the Melissa Pilot Plant
Start Date / End Date : 01-SEP-11 / 31-OCT-12
Sponsor : Teagasc
Title : Transfer of Human Pathogens from Organic Waste Strains to the Horticulture Food Chain
Start Date / End Date : 01-FEB-12 / 18-AUG-15
Sponsor : University College Dublin Foundation Ltd.
Title : Danone Newman Fellowship
Start Date / End Date : 01-JUN-12 / 31-MAY-14
Sponsor : University College Dublin Foundation Ltd.
Title : Dawn Farm Foods Newman Fellowship
Start Date / End Date : 01-SEP-12 / 31-JUL-15
Sponsor : Teagasc
Title : The effect of stresses along the farm to fork food chain on the genomics and virulence of foodborne bacterial pathogens.
Start Date / End Date : 01-OCT-09 / 30-SEP-12
Sponsor : Teagasc
Title : Emergence of pathogens with resistance to biocides in use in the food industry
Start Date / End Date : 01-JAN-09 / 31-DEC-09
Sponsor : Teagasc
Title : Typing of L. monocytogenes isolates for epidemiological studies
Start Date / End Date : 01-OCT-08 / 30-SEP-09
Sponsor : Dept. of Agriculture, Fisheries & Food (DAFF)
Title : Emergence of pathogens with resistance to biocides in use in the food industry
Start Date / End Date : 01-DEC-08 / 31-MAY-12
Sponsor : Science Foundation Ireland (SFI)
Title : An International Meeting on Cronobacter (Enterobacter Sakazakii)
Start Date / End Date : 01-AUG-08 / 28-FEB-09
Sponsor : University College Dublin (UCD)
Title : Re-zoning and enhancement of molecular biology facilities and resources in the Centre for Food Safety UCD
Start Date / End Date : 26-MAY-08 / 01-DEC-09
Sponsor : Dept. of Agriculture, Fisheries & Food (DAFF)
Title : Genomics of Gram Negative Food Poisoning Bacteria of Animal Origin
Start Date / End Date : 01-JAN-08 / 31-DEC-11
Sponsor : Irish Research Council for Science Engineering and Technology (IRCSET)
Title : Investigation of the role of RNA efflux pumps in the virulence of Enterobacter sakazakii in selected cell lines and at the blood barrier in an animal model
Start Date / End Date : 01-OCT-07 / 30-SEP-10
Sponsor : Irish Research Council for Science Engineering and Technology (IRCSET)
Title : Molecular characterisation of the colonic acid exopolysaccharide locus in the infant formula pathogen E. Sakazakii and its contribution to the development of stress and host cell infection
Start Date / End Date : 01-DEC-07 / 30-NOV-09
Sponsor : Teagasc
Title : Regulation of the acid tolerance response in Salmonella species and its effect on dietary control measures in cattle and pigs
Start Date / End Date : 01-DEC-06 / 30-NOV-09
Sponsor : Teagasc
Title : Anti-microbial agents (bacteriophage and bacteriocins) for control of verocytotoxigenic E. coli at key stages in the beef chain
Start Date / End Date : 01-DEC-06 / 30-NOV-09
Sponsor : Dept. of Agriculture, Fisheries & Food (DAFF)
Title : Regulation of the acid tolerance response in salmonella
Start Date / End Date : 01-DEC-06 / 30-NOV-09
Sponsor : Dept. of Agriculture, Fisheries & Food (DAFF)
Title : Antimicrobial resistance in commercial organisms in dairy, pig and poultry production in Ireland as a reservoir of resistance of animal and zoonotic pathogens
Start Date / End Date : 01-DEC-06 / 31-JAN-11
Sponsor : Enfer Technology
Title : Development of rapid pathogen detection methods
Start Date / End Date : 01-MAR-04 / 28-FEB-05
Sponsor : Dept. of Agriculture, Fisheries & Food (DAFF)
Title : Development of rapid nucleic acid based methods and demonstration of equivalence with cultural techniques for assessing compliance with forthcoming EU microbiological criteria for fresh meat carcasses
Start Date / End Date : 01-APR-05 / 31-MAR-08
Sponsor : Teagasc
Title : Risk analysis based control of Salmonella in pork on the island of Ireland
Start Date / End Date : 01-APR-05 / 31-MAR-08
Sponsor : Teagasc
Title : Sentinel surveillance of Campylobacter in Ireland
Start Date / End Date : 01-APR-05 / 31-MAR-09
Sponsor : Teagasc
Title : Development of rapid nucleic based methods for total viable counts (TVC's) on fresh meat
Start Date / End Date : 01-APR-05 / 31-MAR-08
Sponsor : Teagasc
Title : Development of rapid nucleic acid based methods for Salmonella spp.
Start Date / End Date : 01-APR-05 / 31-MAR-08
Sponsor : Irish Equine Centre
Title : Molecular Characterization of selected escherichia isolated recovered from equine holdings
Start Date / End Date : 01-MAR-05 / 29-FEB-08
Sponsor : Teagasc
Title : Beef and Dairy Farm HACCP with particular emphasis on Salmonella control
Start Date / End Date : 06-DEC-04 / 05-DEC-07
Sponsor : Glanbia
Title : Enterobacter sakazii: development of a direct detection and quantitation protocol for milk-based products
Start Date / End Date : 01-JAN-05 / 31-DEC-07
Sponsor : Teagasc
Title : An investigation of Antibiotic resistance transfer in Animal and Plant Systems
Start Date / End Date : 01-OCT-04 / 30-SEP-07
Sponsor : Cork Institute of Technology (CIT)
Title : Molecular characterisation of Antimicrobial Resistance in Pathogens of Animal Origin (MARP)
Start Date / End Date : 01-MAY-04 / 30-AUG-05
Sponsor : Food Safety Authority of Ireland (FSAI)
Title : Molecular Surveillance of VTEC in liquid milk holdings
Start Date / End Date : 01-MAR-04 / 28-FEB-05
Sponsor : Food Safety Promotion Board (SAFEFOOD)
Title : Development of a risk assessment model for Salmonella in shell eggs and processed eggs in Ireland
Start Date / End Date : 19-DEC-03 / 31-DEC-07
Sponsor : Food Safety Promotion Board (SAFEFOOD)
Title : Follow up Surveillance and Risk Assessment of MAP culture Positive and suspect positive herds in the Cork region
Start Date / End Date : 01-MAY-03 / 30-NOV-04
Sponsor : Food Safety Promotion Board (SAFEFOOD)
Title : Research Network on Foodborne Viruses
Start Date / End Date : 01-MAR-04 / 28-FEB-09
Sponsor : Centre for Food Safety
Title : Molecular analysis of antimicrobial resistant determinants in food pathogens
Start Date / End Date : 01-DEC-03 / 30-NOV-04
Sponsor : Cherry Orchard Hospital
Title : Investigation of the occurrence of E.coli 026 and 0111 in retail minced meat in Ireland
Start Date / End Date : 01-MAR-03 / 29-FEB-04
Sponsor : Teagasc
Title : Control of Campylobacter in poultry in Ireland
Start Date / End Date : 01-SEP-06 / 31-AUG-09
Sponsor : Teagasc
Title : Detection and surveillance of Enterobacter sakazakii along the infant formula food chain
Start Date / End Date : 01-OCT-06 / 30-SEP-10
Sponsor : Safefood - Food Safety Promotion Board (via Teagasc)
Title : Sentinel surveillance of campylobacter in Ireland
Start Date / End Date : 01-APR-06 / 30-SEP-09
Sponsor : Dept. of Agriculture, Fisheries & Food (DAFF)
Title : Prevalence and characterisation of Yersinia euterocolitica in animal populations in Ireland
Start Date / End Date : 01-NOV-06 / 31-OCT-09
Sponsor : Irish Research Council for Science Engineering and Technology (IRCSET)
Title : Enterobacter sakazakii in infant milk formula
Start Date / End Date : 06-JUL-06 / 31-MAR-09
Sponsor : Teagasc
Title : Enterobacter sakazakii in infant milk formula
Start Date / End Date : 01-SEP-06 / 30-JUN-09
Sponsor : Glanbia
Title : Surveillance and identification of thermodynamic/philic bacteria in whey
Start Date / End Date : 01-OCT-05 / 25-AUG-08
Sponsor : Dept. of Agriculture, Fisheries & Food (DAFF)
Title : Zoonotic potential of Rotaviruses; characterisation of rotavirus implicated in human and animal disease and detection in food stuffs
Start Date / End Date : 01-APR-06 / 31-MAR-09
Sponsor : Dept. of Agriculture, Fisheries & Food (DAFF)
Title : Detection and surveillance of Enterobactor sakazakii along the infant formula food chain
Start Date / End Date : 01-JUN-06 / 30-NOV-09
Sponsor : University College Dublin (UCD)
Title : 1st International Conference on Cronobacter (Enterobacter sakazakii)
Start Date / End Date : 01-JAN-09 / 30-JUN-10

Recent Postgraduates

Michelle O Rourke   -   Thesis Supervisor
Rebecca O Mahony   -   Thesis Supervisor
Evonne Mc Cabe   -   Thesis Supervisor
Ciara Walsh   -   Thesis Supervisor

2008

Niall Mullane, PhD. Enterobacter sakazakii- direct detection and quantitation protocol for milk-based products.

Edel O'Regan, PhD. Development of rapid nucleic acid based methods and demonstration of equivalence with cultural techniques for assessing compliance with forthcoming EU microbiological criteria for fresh meat carcasses

Mary Murphy, PhD. The prevalence and characterisation of non-0157 VTEC Escherichia coli in retail raw minced beef in Ireland.

 

2009 - Theses submitted (MSc and PhD) with names of thesis; candidate and date-

Doctoral theses-
Transmission & molecular characterization of Salmonella spp. in the pork slaughter process.
(S. Duggan, Ph.D. (UCD) ) registered in July, 2006;
Supervisors: S. Fanning†, P. Whyte and G. Duffy).

Enterobacter sakazakii in Infant milk formula.
(C. Molloy, Ph.D. (UCD) ) registered in July, 2006;
Supervisors: S. Fanning†, P. Whyte and G. Duffy).

Zoonotic potential of Rotaviruses: characterization of rotavirus implicated in human and animal disease; and detection in foodstuffs.
(E. Mulherin, Ph.D. (UCD) ) registered in April, 2006;
Supervisors: S. Fanning†, P. Whyte and M. Doherty).

A Sentinel Study of Campylobacter.
(A. Patriarchi, PhD. (UCD) registered in June, 2005;
Supervisors: S. Fanning†, and D. Bolton).

Development of rapid nucleic acid based methods for total viable counts (TVC's) on fresh meat.
(A.Dolan, PhD. (UCD) registered in April, 2005; Supervisors: S. Fanning†, P. Whyte and G. Duffy).

An Investigation of Antibiotic Resistance Transfer in Animal and Plant Systems.
(N. Toomey, PhD. (UCD) registered in September, 2004;
Supervisors: D. Bolton, S. Fanning† and P. Whyte).

Masters' thesis-
An evaluation of the implementation of the new hygiene package in food businesses within the ambit of the Veterinary Section-Cork County Council
(C. Vasilescu, M.V.M. (UCD) graduated in June, 2009;
Supervisors: M. Doherty†, P. Whyte and S. Fanning†).

† denotes the main supervisor


Current Postgraduate Students

Nicholas Andrews, Doctor of Philosophy (PhD)   -   Thesis Supervisor
yinping dong, Doctor of Philosophy (PhD)   -   Thesis Supervisor
Sakshi Lamba, Doctor of Philosophy (PhD)   -   Thesis Co-Supervisor
Laura Espinosa, Doctor of Philosophy (PhD)   -   Thesis Co-Supervisor
Mary Mc Donnell, Prof Cert (9)   -   Thesis Supervisor
Benjamin Roques, Doctor of Philosophy (PhD)   -   Thesis Co-Supervisor
Yu Cao, Doctor of Philosophy (PhD)   -   Thesis Supervisor
Laura Luque, Doctor of Philosophy (PhD)   -   Thesis Supervisor
Yujie Hu, Doctor of Philosophy (PhD)   -   Thesis Supervisor
Rachael Reid, Doctor of Philosophy (PhD)   -   Thesis Supervisor

Teaching

Teaching Philosophy

Modules Coordinated

201600   PHPS40610     Public Health & Population Sci: Food Safety
201600   PHPS40600     Public Health & Population Sci: Antimicrobial resistant zoonot

Enhancement of Teaching

Review and Enhancement of Curriculum

Developing as a Teacher

Innovation & Leadership