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UCD School of Chemical & Bioprocess Engineering

'A birds' eye view of everyday capillary tubes'. Image by Ms Susan Kelleher.

'A birds' eye view of everyday capillary tubes'. Image by Ms Susan Kelleher.

School of Chemical & Bioprocess Engineering - Research Publications 2007/08

Below is the list of research publications for the School of Chemical & Bioprocess Engineering in the academic year 2007/08




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Book Chapters
Dr Eoin Casey
E Casey (2008) 'Membrane bioreactors' In: Anil Kumar Pabby, Ana Maria Sastre, and Syed S.H. Rizvi (eds). Handbook of Membrane Separations: Chemical, Pharmaceutical, and Biotechnological Applications. USA: CRC Press. Available Online  
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Books Edited
Professor Mohamed Al-Rubeai
Chaudhuri J. and M. Al-Rubeai (Ed.). (2007) Bioreactors for Tissue Engineering. Dordrecht: Springer.  
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Peer Reviewed Journals
Professor Mohamed Al-Rubeai
Krampe, B., Swiderek, H., Al-Rubeai, M., (2008) 'Transcriptome and proteome analysis of antibody-producing mouse myeloma NS0 cells cultivated at different cell densities in perfusion culture'. Biotechnology and Applied Biochemistry, 50 :133-141.  
Astley, K., Al-Rubeai, M., (2008) 'The role of Bcl-2 and its combined effect with p21(CIP1) in adaptation of CHO cells to suspension and protein-free culture'. Applied Microbiology and Biotechnology, 78 (3):391-399.  
138. Naciri M., Kuystermans D., Al-Rubeai M. (2008) 'Monitoring pH and dissolved oxygen in mammalian cell culture using optical sensors'. Cytotechnology, 57 :245-250.  
Sandhu, K. S., Al-Rubeai, M., (2008) 'Monitoring of the adenovirus production process by flow cytometry'. Biotechnology Progress, 24 (1):250-261.  
Swiderek, H., Al-Rubeai, M., (2008) 'Functional genome-wide analysis of antibody producing NSO cell line cultivated at different temperatures (vol 98, pg 616, 2007)'. Biotechnology and Bioengineering, 100 (4):838-838.  
Swiderek, H., Logan, A., Al-Rubeai, M., (2008) 'Cellular and transcriptomic analysis of NS0 cell response during exposure to hypoxia'. Journal of Biotechnology, 134 (1-2):103-111.  
Browne, S.M. and Al-Rubeai, M. (2007) 'Selection methods for high-producing mammalian cell lines'. Trends in Biotechnology, 25 (9):425-432.  
Dr Eoin Casey
Eoin Syron and Eoin Casey (2008) 'Membrane aerated biofilms for high rate biotreatment: performance appraisal, engineering principles, scale-up and development requirements'. Environmental Science and Technology, 42 (6):1833-1844. Available Online  
E Syron and E Casey (2008) 'Model-based comparative performance analysis of membrane aerated biofilm reactor configurations'. Biotechnology and Bioengineering, 99 (6):1361-1373. Available Online  
Casey E (2007) 'Tracer measurements reveal experimental evidence of biofilm consolidation'. Biotechnology and Bioengineering, 98 (4):913-918. Available Online  
Dr Niall J English
N.J. English (2008) 'Effects of electrostatics techniques on the estimation of thermal conductivity via equilibrium molecular dynamics simulation: application to methane hydrates'. Molecular Physics, 106 (15):1887-1898.  
Dr Maria Raytchinova Kosseva
M.R. Kosseva & R. Insall (2007) 'Fluid dynamics simulation of micropipette-based chemotaxis assays'. Amino Acids, 33 :XIII-XIV.  
Professor Donal MacElroy
Ramamoorthy, A., Rahman, M., Mooney, D. A., MacElroy, J. M. D., Dowling, D. P., (2008) 'Thermal stability studies of atmospheric plasma deposited siloxane films deposited on Vycor (TM) glass'. Surface & Coatings Technology, 202 (17):4130-4136.  
Mooney, D.A., and MacElroy, J.M.D. (2007) 'Differential Water Sorption Studies of Kevlar 49 and As-Polymerised poly(p-phenylene terephthalamide): Determination of Water transport Properties'. Langmuir, 23 (23):11804-11811.  
Dr Susan McDonnell
Hughes, L., Malone, C., Chumsri, S., Burger, A. M., McDonnell, S., (2008) 'Characterisation of breast cancer cell lines and establishment of a novel isogenic subclone to study migration, invasion and tumourigenicity'. Clinical & Experimental Metastasis, 25 (5):549-557.  
Dr Damian Mooney
Ramamoorthy, A., Rahman, M., Mooney, D. A., MacElroy, J. M. D., Dowling, D. P., (2008) 'Thermal stability studies of atmospheric plasma deposited siloxane films deposited on Vycor (TM) glass'. Surface & Coatings Technology, 202 (17):4130-4136.  
Mooney, D.A. and MacElroy, J.M.D. (2007) 'Differential Water Sorption Studies on Kevlar 49 and As-Polymerized Poly(p-phenylene terephthalamide): Determination of Water Transport Properties'. Langmuir, 23 (23):11804-11811.  
Dr Cosima Stubenrauch
[56] E. Carey, S.R. Patil, C. Stubenrauch (2008) 'Conductivity Measurements as a Method for Studying Ionic Technical Grade Surfactants'. Tenside Surf. Det, 3 (120).  
[57] C. Stubenrauch, R. Tessendorf, A. Salvati, D. Topgaard, T. Sottmann, R. Strey, I. Lynch (2008) 'Gelled Polymerizable Microemulsions. 2. Microstructure'. LANGMUIR, 24 (8473).  
[54] C. Stubenrauch, T. Wielpütz, T. Sottmann, C. Roychowdhury, F. J. DiSalvo (2008) 'Microemulsions as Templates for the Synthesis of Metallic Nanoparticles'. Colloids and Surfaces A, 317 (328).  
[52] T. Gilányi, I. Varga, C. Stubenrauch, R. Mészáros (2008) 'Adsorption of alkyl trimethylammonium bromide homologues at air/solution interface'. Journal of Colloid and Interface Science, 317 (395).  
[55] S.R. Patil, N. Buchavzov, E. Carey, C. Stubenrauch (2008) 'Binary Mixtures of β-Dodecylmaltoside (β-C12G2) with Cationic and Non-Ionic Surfactants: Micelle and Surface Compositions'. Soft Matter, 4 (840).  
[50] C. Stubenrauch, D. Langevin, D. Exerowa, E. Manev, P.M. Claesson, L.B. Boinovich, R. v. Klitzing (2007) 'Comment on 'Hydrophobic Forces in the Foam Films Stabilized by Sodium Dodecyl Sulfate: Effect of Electrolyte' and Subsequent Criticism'. Langmuir, 23 (12457).  
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Conference Publications
Professor Mohamed Al-Rubeai
Al-Rubeai M. (2008) In vitro expansion of chondroprogenitor cells in 2D and 3D culture XIIth BELACT meeting,  
Al-Rubeai M., Sandhu K., Naciri M. (2008) Multiparametric flow cytometry for process monitoring and prediction of virus and protein expression Cell Culture Engineering XI,  
Krampe B. and Al-Rubeai M. (2008) Transcriptional profiling of NS0-GS and NS0-Bcl-2 cells producing antibody at different steady states in chemostat culture Cell Culture Engineering XI,  
Boehm D., Murphy W., Al-Rubeai M. (2008) Ex-vivo production of red blood cells from peripheral blood derived CD34+ cells Cell Culture Engineering XI,  
Al-Rubeai M. (2008) Cell engineering strategy to improve stability, adaptation and growth of cell lines BioProcess International Conference,  
Al-Rubeai M (2008) Suppression of apoptosis Cell Line Development and Engineering,  
Al-Rubeai M (2007) Cell line development and cell engineering strategies for the production of biopharmaceuticals from mammalian cells 2nd Asian Biomanufacturing Conference. Kuala Lumpur, Malaysia,  
Al-Rubeai M. (2007) Cell engineering of apoptosis Optimizing Cell Culture Development, CHI's Third Annual Meeting, Boston USA,  
Dr Eoin Casey
Eoin Casey, Eoin Syron, John Shanahan, Michael Semmens (2008) Comparative economic analysis of full scale MABR configurations North American Membrane Research Conference, University of Massachusetts, Amherst, USA,  
Safari. A., Karac, A., Walter, M., Casey, E, Ivankovic, A (2008) A two-phase flow model of biofilm detachment 31st Annual Meeting of The Adhesion Society, Austin, TX. USA,  
M. Barrett, E. Casey, B. Glennon (2007) The Impact Of Mixing Times Scales And Process Parameters On The Optimisation And Scale Up Of Anti-Solvent Addition Crystallizations AIChE Annual meeting, Salt Lake City, USA,  
Dr Niall J English
N.J. English (2008) Research experiences and opportunities for undergraduates in classical computer molecular simulation studies: case studies International Conference on Engineering Education (ICEE 2008), Pecs-Budapest,  
N.J. English, R.P. Warzinski, E.J. Rosembaum, E.M. Myshakin, I.K. Gamwo, H. Jiang, K.D. Jordan, D.W. Shaw (2008) Thermal Properties of Methane Hydrate by Experiment and Modelling and Impacts Upon Technology 6th International Conference on Gas Hydrates, Vancouver,  
N.J. English, J.S. Tse (2008) Molecular Dynamics Study of Thermal Conduction in Methane Hydrates 6th International Conference on Gas Hydrates, Vancouver,  
N.J. English, D.A. Mooney (2007) Molecular Simulation of Electromagnetic Field Effects on Ionic Liquids 2007 AIChE Annual Meeting, Salt Lake City,  
N.J. English (2007) Denaturation of hen egg white lysozyme in electromagnetic fields: an MD study International Conference on Computational Physics, 2007, Brussels,  
Professor Brian Glennon
M. Barrett, E. Casey, B.Glennon (2007) The impact of mixing times scales and process parameters on the optimisation and scale up of anti-solvent addition crystallisations AIChE Annual Meeting, Salt Lake City, USA,  
Dr Patricia Mary Kieran
Hennessy E., Hernández R., Kieran P.M.& McLoughlin H. (2008) Translating Teaching & Learning Across Disciplines in a Modular System Universitas 21 Conference: Does Teaching & Learning Translate?,  
Kieran, P.M. (2008) Introducing Problem-Based Learning to the Chemical Engineering Curriculum International Symposium in Engineering Education: Student-Centred Learning in Small Groups,  
Dr Maria Raytchinova Kosseva
Kosseva MR & R Insall (2008) Fluid Dynamics Simulation of Micropipette-Based Chemotaxis Assays BITs 1st Annual World Congress of Industrial Biotechnology, IBIO2008, Hangzou, China,  
MR Kosseva (2008) A Novel Approach for Dairy Waste Management BITs 1st Annual World Congress of Industrial Biotechnology, iBIO2008,  
Professor Donal MacElroy
M. McCann, R. Amsarani, M. Rahman, D. A. Mooney, D. P. Dowling and J. M. D. MacElroy (2008) Controlling the Architecture of Micro-porous SiOx and TiOx Coatings for High Temperature CO2/Air Separations The 10th International Conference on Inorganic Membranes (ICIMs), Tokyo, Japan,  
R. Amsarani, M. Rahman, D. A. Mooney, J. M. D. MacElroy and D. P. Dowling (2008) The effect of process parameters on the microstructure and thermal stability of siloxane films deposited by plasma jet system 14th International Conference on Solid Films and Surfaces, Trinity College Dublin, Ireland,  
R. Amsarani, M. Rahman, D. A. Mooney, J. M. D. MacElroy and D. P. Dowling (2007) Influence of thermal treatment on the properties of atmospheric plasma deposited SiOx coatings Technological Plasma Workshop, Belfast, N. Ireland,  
Moloney, J., McDermott, T.C., Mooney, D.A., MacElroy, J.M.D. (2007) Molecular modelling of the creation of novel, ultra-thin, nano-porous layers and supported membranes using chemical vapor deposition AIChE National Annual Meeting, Salt Lake City, Utah, U.S.A,  
Ramamoorthy, A., R., Rahman, M., Mooney, D.A., MacElroy, J.M.D., Dowling, D.P. (2007) Experimental studies of atmospheric plasma deposited siloxane coatings SFI Science Summit 2007, CityWest, Dublin,  
Landowski, M., Deshmukh, S., Mooney, D.A., MacElroy, J.M.D. (2007) Modelling the Drug Release in pH-Sensitive Hydrogels Based on Maa-Co-Hema AIChE National Annual Meeting, Salt Lake City, Utah, U.S.A,  
Deshmukh, S.A., Landowski, M., McDermott, T.C., Mooney, D.A., MacElroy, J.M.D. (2007) Molecular Simulation of Poly (N-isopropyl acrylamide) Hydrogel crosslinked by Glyoxal bis (diallyl acetal): observation of the lower-Critical-solution- temperature Conference on Computational Physics CCP2007, Brussels, Belgium,  
Akter, T., McDermott, T.C., MacElroy, J.M.D., Mooney, D.A. (2007) Modeling of thin silica layers via kinetic Monte Carlo (KMC) of TEOS (tetraethoxysilane) deposition onto nonporous substrates Conference on Computational Physics CCP2007, Brussels, Belgium,  
Moloney, J., McDermott, T.C., Mooney, D.A., MacElroy, J.M.D. (2007) Studies into the Preparation of Model Microporous Silica and Molecular Simulation of Ultra-thin Oxide Layer Deposition on Porous Substrates Conference on Computational Physics CCP2007, Brussels, Belgium,  
Dr Susan McDonnell
Malone, C., McGee, S., Hughes, L., Gallagher, W.M. and S McDonnell ( (2008) Study of the Functional Effects of Lentiviral-Mediated RNAi Knockdown of Novel Gene PLAC8 in Breast Cancer Progression Irish Association for Cancer Research, Annual Meeting,  
Malone, C., McGee, S., Hughes, L., Gallagher, W.M. and S McDonnel (2007) Lentiviral-Mediated RNAi Knockdown of Novel Breast Cancer Associated Gene PLAC8  AACR Special Conference in Cancer Research,  
McDonnell, S, Hughes, L, Malone, C, (2007) ANTICANCER RES Microarray analysis of invasion in human cancer cells in vitro, 1371 - 1372  
Dr Damian Mooney
Moloney, J.B.; McDermott, T.C.; Mooney, D.A.; MacElroy, J.M.D. (2007) Molecular Modeling of the Creation of Novel, Ultra-Thin, Nano-Porous Layers and Supported Membranes Using Chemical Vapor Deposition Annual AICHE Meeting, Salt Lake City, Nov. 5th-9th 2007,  
Mooney, D.A.; English, N.J. (2007) Molecular Simulation Studies of E/m Field Effects on Ionic Liquid Systems Annual AICHE Meeting, Salt Lake City, Nov. 5th-9th 2007,  
Landowski, M.; Deshmukh, S.M.; Mooney, D.A.; MacElroy, J.M.D. (2007) Modelling The Drug Release In pH-Senitive Hydrogels Based On Maa-Co-Hema Annual AICHE Meeting, Salt Lake City, Nov. 5th-9th 2007,  
Deshmukh, S.A.; Landowski, M.; McDermott, T.; Mooney, D.A.; MacElroy, J.M.D (2007) Molecular Simulation of Poly (N-isopropyl acrylamide) Hydrogel crosslinked by Glyoxal bis (diallyl acetal): observation of the lower-Critical-solution- temperature CONFERENCE ON COMPUTATIONAL PHYSICS BRUSSELS, SEPTEMBER 5-8, 2007,  
Akter, T.; McDermott, T.; MacElroy, J.M.D; Mooney, D.A. (2007) Studies into the Preparation of Model Microporous Silica and Molecular Simulation of Ultra-thin Oxide Layer Deposition on Porous Substrates CONFERENCE ON COMPUTATIONAL PHYSICS BRUSSELS, SEPTEMBER 5-8, 2007,  
Akter, T.; McDermott, T.; MacElroy, J.M.D.; Mooney, D.A. (2007) Modeling of thin slica layers via kinetic Monte Carlo (KMC) of TEOS deposition CONFERENCE ON COMPUTATIONAL PHYSICS BRUSSELS, SEPTEMBER 5-8, 2007,  
McDermott, T.; Mooney, D.A.; MacElroy, J.M.D (2007) Atomistic Simulation of the Formation of Nanoporous Silica Films via Chemical Vapor Deposition CONFERENCE ON COMPUTATIONAL PHYSICS BRUSSELS, SEPTEMBER 5-8, 2007,  
Dr Cosima Stubenrauch
[11] Z. Angarska, C. Stubenrauch, E. Manev (2008) Effect of nonionic surfactants on the thinning and critical thickness of foam films stabilized by n-Dodecyl-b-D-Maltoside 3rd International Conference on Colloid Chemistry and Physicochemical Mechanics, Moscow,  
[10] D. Blunk, G. Catanoiu, V. Gärtner, C. Stubenrauch (2007) Synthesis and Supramolecular Organisation of Amphiphiles Made of Natural Building Blocks 3rd European Detergents Conference,  
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Published Reports
Dr Maria Raytchinova Kosseva
Department of Chemical Engineering, UCT (2007) AN EXTENDED INVESTIGATION INTO THE MECHANISM AND KINETICS OF BACTERIAL SULPHATE REDUCTION - Water Research Commission (WRC) Report No. 1251/1/07. WRC, University of Cape Town, RSA.  
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