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UCD School of Biology & Environmental Science

'Lovely lichens'. Image by Ms Serena Dool.

'Lovely lichens'. Image by Ms Serena Dool.

UCD School of Biology & Environmental Science - Research Publications 2009/10

Below is the list of research publications for the UCD School of Biology & Environmental Science in the academic year 2009/10




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Book Chapters
Dr Paul McCabe
Reape, T. and McCabe, P.F. (2010) 'Balancing life and death: The role of the mitochondrion in programmed cell death' In: Lincoln Taiz and Eduardo Zeiger (eds). Plant Physiology Online Fifth Edition. Massachusetts, USA: Sinauer Associates. Available Online  
Dr Theresa Reape
Reape, T. and McCabe, P.F. (2010) 'Balancing life and death: The role of the mitochondrion in programmed cell death' In: Lincoln Taiz and Eduardo Zeiger (eds). Plant Physiology Online Fifth Edition. Massachusetts, USA: Sinauer Associates. Available Online  
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Peer Reviewed Journals
Dr Jan-Robert Baars
Becerra Jurado, G., Callanan, M., Gioria, M., Baars, J-R., Harrington, R. and Kelly-Quinn, M. (2009) 'Aquatic macroinvertebrate diversity of natural and wastewater treatment ponds: community structure and driving environmental factors'. Hydrobiologia, 634 :153-165.  
Feeley, H., Baars, J-R. and Kelly-Quinn, M. (2009) 'The life history of Perla bipunctata Pictet, 1833 (Plecoptera; Perlidae) in the upper River Liffey'. Aquatic Insects, 31 (4):261-270. Available Online  
Dr Claire Michelle Belcher
Belcher, C.M., Mander, L., Rein, G., Jervis, F.X., Haworth, M., Hesselbo, S.P., Glasspool, I.J. and McElwain, J.C. (2010) 'Increased fire activity at the Triassic/Jurassic boundary in Greenland due to climate-driven floral change'. Nature Geoscience, 3 (6):426-429. Available Online  
Belcher, C.M. (2009) 'Reigniting the Cretaceous-Palaeogene firestorm debate'. Geology, 37 (12):1147-1148. Available Online  
Professor Thomas Bolger
Arroyo, J., Moraza, M.L. and Bolger, T. (2010) 'The mesostigmatid mite (Acari, Mesostigmata) community in canopies of Sitka spruce forests in Ireland and a comparison with ground moss habitats'. Graellsia, 66 (1):29-37.  
Vanbergen, A.J., Woodcock, B.A., Koivula, M.I., Niemelä, J., Kotze, D.J., Bolger, T., Golgen, V., Dubs, F., Boulanger, G., Serreno, J., Lencina, J.L., Serrano, A., Aguiar, C., Grandchamp, A.-C., Stoffer, S., Szél, G., Ivvits, E., Adlar, P., Markus, J. and Watt, A.D. (2010) 'Trophic level modulates carabid beetle responses to habitat and landscape structure: a pan-European study'. Ecological Entomology, 35 (2):226-235.  
Dr Mark Browne
Browne, M.A., Galloway, T.S. and Thompson, R.C. (2010) 'Spatial Patterns of Plastic Debris along Estuarine Shorelines'. Environmental Science & Technology, 44 :3404-3409.  
Professor Nicholas Clipson
Lillis, L., Clipson, N. and Doyle, E. (2010) 'Quantification of catechol dioxygenase gene expression in soil during degradation of 2,4-dichlorophenol'. Fems Microbial Ecology, 73 (2):363-369.  
Carson, J.K., Gleeson, D.B., Clipson, N. and Murphy, D.V. (2010) 'Afforestation alters community structure of soil fungi'. Fungal Biology, 114 :580-584.  
Rooney, D.C., Kennedy, N.M., Gleeson, D.B. and Clipson, N.J.W. (2010) 'Responses of Ammonia-Oxidising Bacterial Communities to Nitrogen, Lime, and Plant Species in Upland Grassland Soil'. Applied and Environmental Soil Science, Article ID 319721 (7 pages).  
McEniry, J., O'Kiely, P., Clipson, N.J.W., Forristal, P.D. and Doyle, E.M. (2010) 'Assessing the impact of various ensilage factors on the fermentation of grass silage using conventional culture and bacterial community analysis techniques'. Journal of Applied Microbiology, 108 (5):1584-1593.  
Hutchens, E., Gleeson, D., McDermott, F., Miranda-Saco Luengo, R. and Clipson, N. (2010) 'Meter-Scale Diversity of Microbial Communities on a Weathered Pegmatite Granite Outcrop in the Wicklow Mountains, Ireland; Evidence for Mineral Induced Selection?'. Geomicrobiology Journal, 27 (1):1-14.  
Dr Tasman Crowe
Atalah, J. and Crowe, T.P. (2010) 'Combined effects of nutrient enrichment, sedimentation and grazer loss on rock pool assemblages'. Journal of Experimental Marine Biology and Ecology, 388 :51-57.  
Noël, L.M-J., Griffin, J.N., Thompson, R.C., Hawkins, S.J., Burrows, M.T., Crowe, T.P. and Jenkins, S.J. (2010) 'Assessment of a field incubation method estimating primary productivity in rockpool communities'. Estuarine Coastal and Shelf Science, 88 :153-159.  
Firth, L.B. and Crowe, T.P. (2010) 'Competition and habitat suitability: small-scale segregation underpins large-scale coexistence of key species on temperate rocky shores'. Oecologia, 162 (NA):163-174.  
Dr Fiona Doohan
Wendt, T., Doohan, F., Winckelmann, D. and Mullins, E. (2010) 'Gene transfer into Solanum tuberosum via Rhizobium spp'. Transgenic research . Available Online  
Petti, C., Khan, M. and Doohan, F. (2010) 'Lipid transfer proteins and protease inhibitors as key factors in the priming of barley responses to Fusarium head blight disease by a biocontrol strain of Pseudomonas fluorescens'. Functional and Integrative Genomics, 10 (4):619-627.  
Thakuria, D., Schmidt, O., Finan, D., Egan, D. and Doohan, F.M. (2010) 'Gut wall bacteria in earthworms: a natural selection process'. The ISME Journal, 4 (3):357-366. Available Online  
Walter, S., Nicholson, P. and Doohan, F.M. (2010) 'Action and reaction of host and pathogen during Fusarium head blight disease'. The New phytologist, 185 (1):54-66.  
Dr Evelyn Doyle
Lillis, L., Doyle, E., and Clipson, N. (2010) 'Quantification of catechol dioxygenase gene expression in soil during degradation of 2,4-dichlorophenol'. Fems Microbial Ecology, 73 (2):363-369.  
McEniry, J., O'Kiely, P., Clipson, N.J.W., Forristal, P.D. and Doyle, E.M. (2010) 'Assessing the impact of various ensilage factors on the fermentation of grass silage using conventional culture and bacterial community analysis techniques'. Journal of Applied Microbiology, 108 (5):1584-1593.  
Dr Gareth Dyke
Walker, C. A. and Dyke, G.J. (2010) 'Euenantiornithine birds from the late Cretaceous of El Brete (Argentina)'. Irish Journal of Earth Sciences, 27 :15-62.  
Nudds, R.L. and Dyke, G.J. (2010) 'Narrow primary feather rachises in Confuciusornis and Archaeopteryx suggest poor flight ability'. Science, 328 :887-889.  
O'Connor, J.K. and Dyke, G.J. (2010) 'A re-assessment of Sinornis santensis and Cathayornis yandica (Aves: Enantiornithes)'. Records of the Australian Museum, 62 (1):7-20.  
Dyke, G.J. and Kaiser, G.W. (2010) 'Cracking a developmental constraint: egg size and bird evolution'. Records of the Australian Museum, 62 (1):207-216.  
Bertelli, S., Lindow, B.E.K., Dyke, G.J. and Chiappe, L.M. (2010) 'A well-preserved `charadriiform-like' fossil bird from the early Eocene Fur Formation of Denmark'. Palaeontology, 53 (3):507-531.  
Palmer, C. and Dyke, G.J. (2010) 'Biomechanics of the unique pterosaur pteroid'. Proceedings of the Royal Society, Series B, 277 :1121-1127.  
Mateus, O., Dyke, G.J., Motchurova-Dekova, N., Kamenov, G.D. and Ivanov, P. (2010) 'The first record of a dinosaur from Bulgaria'. Lethaia, 43 (1):88-94.  
Chritz, K.L., Dyke, G.J., Zazzo, A., Monaghan, N. and Sigwart, J.D. (2009) 'Palaeobiology of an extinct Ice Age mammal: stable isotope and cementum analysis of giant deer teeth'. Palaeogeography Palaeoclimatology Palaeoecology, 282 (1-4):133-144.  
McGowan, A.J. and Dyke, G.J. (2009) 'A surfeit of theropods in the Moroccan Late Cretaceous? Comparing diversity estimates from field data and fossil shops'. Geology, 37 (9):843-846.  
Malakhov, D.V., Dyke, G.J. and King, C. (2009) 'Remote sensing applied to paleontology: exploration of Upper Cretaceous sediments in Kazakhstan for potential fossil sites'. Palaeontologica Electronica, 12 (2):1-10.  
Dr Wieland Fricke
Knipfer, T. and Fricke, W. (2010) 'Root pressure and a solute reflection coefficient close to unity exclude a purely apoplastic pathway of radial water transport in barley (Hordeum vulgare)'. New Phytologist, 187 :159-170.  
Boscari, A., Clement, M., Volkov, V., Golldack, D., Hybiak, J., Miller, A.J., Amtmann, A. and Fricke, W. (2009) 'Potassium channels in barley: cloning, functional characterization and expression analyses in relation to leaf growth and development'. Plant Cell and Environment, 32 :1761-1777.  
Volkov, V., Boscari, A., Clement, M., Miller, A.J., Amtmann, A. and Fricke, W. (2009) 'Electrophysiological characterization of pathways for K plus uptake into growing and non-growing leaf cells of barley'. Plant Cell and Environment, 32 :1778-1790.  
Dr Claire Gollety
Golléty, C., Riera, P. and Davoult, D. (2010) 'Complexity of the food web structure of the Ascophyllum nodosum zone evidenced by a ?13C and ?15N study'. Journal of Sea Research, 64 (3):304-312.  
Dr Matthew Haworth
Haworth, M., Gallagher, A., Elliott-Kingston, C., Rascni, A., Marandola, D. and McElwain, J.C. (2010) 'Stomatal index responses of Agrostis canina to CO2 and sulphur dioxide: implications for palaeo-[CO2] using the stomatal proxy'. New Phytologist, 188 (3):845-855.  
Belcher, C.M., Mander, L., Rein, G., Jervis, F.X., Haworth, M., Hesselbo, S.P., Glasspool, I.J. and McElwain, J.C. (2010) 'Increased fire activity at the Triassic/Jurassic boundary in Greenland due to climate-driven floral change'. Nature Geoscience, 3 :426-429.  
Haworth, M., Heath, J. and McElwain, J.C. (2010) 'Differences in the response sensitivity of stomatal index to atmospheric CO2 among four genera of Cupressaceae conifers'. Annals of Botany, 105 (3):411-418. Available Online  
Professor Thomas J Hayden
Jennings, D.J., Carlin, C.M., Hayden, T.J. and Gammell, M.P. (2010) 'Investment in fighting in relation to body condition, age and dominance rank in the male fallow deer, Dama dama'. Animal Behaviour, 79 :1293-1300.  
Dr Elena Hutchens
Hutchens, E., Gleeson, D., McDermott, F., Miranda-CasoLuengo, R. and Clipson, N. (2010) 'Meter-Scale Diversity of Microbial Communities on a Weathered Pegmatite Granite Outcrop in the Wicklow Mountains, Ireland; Evidence for Mineral Induced Selection?'. Geomicrobiology Journal, 27 :1-14.  
Dr Mary Kelly-Quinn
Hayden, B., Pulcini, D., Kelly-Quinn, M., O'Grady, M., Caffrey, J., McGrath, A. and Mariani, S. (2010) 'Hybridisation between two cyprinid fishes in a novel habitat: genetics, morphology and life-history traits'. BMC Evolutionary Biology, 10 . Available Online  
Massa Gallucci, A., Coscia, I., O'Grady, M., Kelly-Quinn, M. and Mariani, S. (2010) 'Patterns of genetic structuring in a brown trout (Salmo trutta L) metapopulation'. Conservation Genetics, 11 :1689-1699. Available Online  
Toscano, B.J., Pulcini, D., Hayden, B., Russo, T., Kelly-Quinn, M. and Mariani, S. (2010) 'An ecomorphological framework for the coexistence of two cyprinid fish and their hybrids in a novel environment'. Biological Journal of the Linnean Society, 99 :768-783.  
Jurado, G.B., Johnson, J., Feeley, H., Harrington, R. and Kelly-Quinn, M. (2010) 'The Potential of Integrated Constructed Wetlands (ICWs) to Enhance Macroinvertebrate Diversity in Agricultural Landscapes'. Wetlands, 30 :393-404.  
Kelly-Quinn, M., Tierney, D. and Mc Garrigle, M. (2009) 'Progress and challenges in the selection of type-specific reference conditions'. Biology and Environment, 109B (3):151-160.  
Becerra Jurado, G. Callanan, M., Gioria, M., Baars J.-R., Harrington, R. and Kelly-Quinn, M. (2009) 'Macroinvertebrate diversity of natural and constructed ponds: community structure and driving environmental factors'. Hydrobiologia, 634 (1):153-165.  
Feeley, H., Baars, J-R. and Kelly-Quinn, M. (2009) 'The life history of Perla bipunctata Pictet, 1833 (Plecoptera; Perlidae) in the upper River Liffey'. Aquatic Insects, 31 (4):261-270. Available Online  
Mr Mojibur Khan
Petti, C., Khan, M. and Doohan, F. (2010) 'Lipid transfer proteins and protease inhibitors as key factors in the priming of barley responses to Fusarium head blight disease by a biocontrol strain of Pseudomonas fluroescens'. Functional and Integrative Genomics, 10 (4):619-627.  
Dr Stefano Mariani
Farrell, E., Mariani, S. and Clarke, M.W. (2010) 'Age and growth estimates for the starry smooth-hound shark (Mustelus asterias) in the Northeast Atlantic Ocean'. Ices Journal of Marine Science, 67 (5):931-939. Available Online  
Hayden, B., Pulcini, D., Kelly-Quinn, M., O'Grady, M., Caffrey, J., McGrath, A. and Mariani, S. (2010) 'Hybridisation between two cyprinid fishes in a novel habitat: genetics, morphology and life-history traits'. BMC Evolutionary Biology, 10 . Available Online  
Massa Gallucci, A., Coscia, I., O'Grady, M., Kelly-Quinn, M. and Mariani, S. (2010) 'Patterns of genetic structuring in a brown trout (Salmo trutta L) metapopulation'. Conservation Genetics, 11 :1689-1699. Available Online  
Toscano, B.J., Pulcini, D., Hayden, B., Russo, T., Kelly-Quinn, M. and Mariani, S. (2010) 'An ecomorphological framework for the coexistance of two cyprinid fish and their hybrids in a novel environment'. Biological Journal of The Linnean Society, 99 :768-783.  
Hayden, S., Bekaert, M., Crider, T.A., Mariani, S., Murphy, W.J. and Teeling, E.C. (2010) 'Ecological adaptation determines functional mammalian olfactory subgenomes'. Genome Research, 20 (1):1-9.  
Sala-Bozano, M., Ketmaier, V. and Mariani, S. (2009) 'Contrasting Signals from Multiple Markers Illuminate Population Connectivity in a Marine Fish'. Molecular Ecology, 18 (23):4811-4826. Available Online  
Sala Bozano, M., Tsalavouta, M. and Mariani, S. (2009) 'Isolation and characterisation of new polymorphic microsatellite markers for the striped sea bream ( Lithognathus mormyrus)'. Conservation Genetics, 10 :1507-1509.  
Dr Paul McCabe
Doyle, S.M. and P.F. McCabe (2010) 'Type and cellular location of reactive oxygen species determine activation or suppression of programmed cell death in Arabidopsis suspension cultures'. Plant Signaling and Behaviour, 5 (4):467-468. Available Online  
Reape, T.J. and McCabe, P.F. (2010) 'Apoptotic-like regulation of programmed cell death in plants'. Apoptosis, 15 :249-256. Available Online  
Doyle, S.M., Diamond, M. and McCabe, P.F. (2010) 'Chloroplast and reactive oxygen species involvement in apoptotic-like programmed cell death in Arabidopsis suspension cultures'. Journal of Experimental Botany, 61 (2):473-482. Available Online  
Dr Jenny McElwain
Haworth, M., Gallagher, A., Elliott-Kingston, C., Raschi, A., Marandola, D. and McElwain, J.C. (2010) 'Stomatal index responses of Agrostis canina to CO2 and sulphur dioxide: implications for palaeo-[CO2] using the stomatal proxy'. New Phytologist, 188 (3):845-855.  
Belcher, C.B., Mander, L., Rein, G., Jarvis, F.X., Haworth, M., Hesselbo, S.P., Glasspool, I. and McElwain, J.C. (2010) 'Increased fire activity in Greenland at the Triassic/Jurassic boundary due to climate-driven floral change'. Nature Geoscience, 3 :426-429.  
Haworth, M., Heath, J. and McElwain, J.C. (2010) 'Differences in the response sensitivity of stomatal index to atmospheric CO2 among four genera of Cupressaceae conifers'. Annals of Botany, 105 (3):411-418. Available Online  
Barclay, R.S., McElwain, J.C. and Sageman, B.B. (2010) 'Carbon sequestration activated by a volcanic CO2 pulse during oceanic anoxic event 2'. Nature Geoscience, 3 :205-208.  
Professor Christoph Mueller
Gleeson, D. E., Müller, C., Banerjee, S., Ma, W., Siciliano, S. D., and Murphy, D. V. (2010) 'Response of ammonia oxidizing archaea and bacteria to changing water filled pore space'. Soil Biology and Biochemistry, 42 :1888-1891.  
Müller, C., Rütting, T., Abbassi, M. K., Laughlin, R. J., Kammann, C., Clough, T. J., Sherlock, R. R., Kattge, J., Jäger, H.-J., Watson, C. J. and Steven, R.J. (2009) 'Effect of elevated CO2 on soil N dynamics in a temperate grassland soil'. Soil Biology & Biochemistry, 41 :1996-2001.  
Dr Carl Khee-Yew Ng
Pata, M.O., Hannun, Y.A. and Ng, C.K.Y. (2010) 'Plant sphingolipids: decoding the enigma of the Sphinx'. New Phytologist, 185 (3):611-630. Available Online  
Xiong, T.C., Hann, C.M., Chambers, J.P., Surget, M. and Ng, C.K.Y. (2009) 'An inducible, modular system for spatio-temporal control of gene expression in stomatal guard cells'. Journal of Experimental Botany, 60 :4129-4136. Available Online  
Dr Kay Nolan
Gibney, E.R. and Nolan, C.M. (2010) 'Epigenetics and gene expression'. Heredity, 105 (1):4-13.  
Tsalavouta, M., Astudillo, O., Byrnes, L. and Nolan, C.M. (2009) 'Regulation of expression of zebrafish (Danio rerio) insulin-like growth factor 2 receptor: implications for evolution at the IGF2R locus'. Evolution and Development, 11 (5):546-558. Available Online  
Dr Eoin O'Gorman
O'Gorman, E.J., Jacob, U., Jonsson, T. and Emmerson, M.C. (2010) 'Interaction strength, food web topology and the relative importance of species in food webs'. Journal of Animal Ecology, 79 :682-692.  
Woodward, G., Benstead, J.P., Beveridge, O.S., Blanchard, J., Brey, T., Brown, L., Cross, W.F., Friberg, N., Ings, T.C., Jacob, U., Jennings, S., Ledger, M.E., Milner, A.M., Montoya, J.M., O'Gorman, E.J., Olesen, J.M., Petchey, O.L., Pichler, D.E., Reuman, D.C., Thompson, M.S., Van Veen, F.J.F. and Yvon-Durocher, G. (2010) 'Ecological networks in a changing climate'. Advances in Ecological Research, 42 :71-138.  
Olesen, J.M., Dupont, Y.L., O'Gorman, E.J., Ings, T.C., Layer, K., Melian, C.J., Troujelsgaard, K., Pichler, D.E., Rasmussen, C. and Woodward, G. (2010) 'From Broadstone to Zackenberg: Space, time and hierarchies in ecological networks'. Advances in Ecological Research, 42 :1-69.  
Professor Bruce Arthur Osborne
Kindler, R., Siemens, J., Kaiser, K., Walmsley, D., Osborne, B.A. et al. (2010) 'Dissolved carbon leaching from soil is a crucial component of the net ecosystem carbon balance'. Global Change Biology . Available Online  
Davis, P.A., Clifton Browne, J., Saunders, M., Lanigan, G., Wright, E., Fortune, T., Burke, J., Connolly, J., Jones, M.B. and Osborne, B.A. (2010) 'Assessing the effects of agricultural management practices on carbon fluxes: Spatial variation and the need for replicated extimates of Net Ecosystem exchange'. Agricultural and Forest Meteorology, 150 (4):564-574.  
Gioria, M. and Osborne, B. (2010) 'Similarities in the impact of three large invasive plant species on soil seed bank communities'. Biological Invasions, 12 :1671-1683.  
Dr Carloalberto Petti
Petti, C., Khan, M. and Doohan, F. (2010) 'Lipid transfer proteins and protease inhibitors as key factors in the priming of barley responses to Fusarium head blight disease by a biocontrol strain of Pseudomonas fluorescens'. Functional and Integrative Genomics, 10 (4):619-627.  
Dr Sebastien Puechmaille

Douangboubpha, B., Bumrungsri, S., Soisook, P., Murray, S.W., Puechmaille, S.J., Satasook, C., Bu, S., Harrison, D.L. and Bates, P.J.J. (2010) 'A taxonomic review of Hipposideros halophyllus, with additional information on H. ater and H. cineraceus (Chiroptera: Hipposideridae) from Thailand and Myanmar'. Acta Chiropterologica, 12 (1):29-50. Available Online  
Puechmaille, S.J., Verdeyroux, P., Fuller, H., Ar Gouilh, M., Bekaert, M. and Teeling, E.C. (2010) 'White-nose syndrome fungus (Geomyces destructans) in bat, France'. Emerging Infectious Diseases, 16 (2):290-293. Available Online  
Dr Theresa Reape
Reape, T.J. and McCabe, P.F. (2010) 'Apoptotic-like regulation of programmed cell death in plants'. Apoptosis, 15 (3):249-256.  
Dr. Florence Renou-Wilson
Renou-Wilson, F., Keane, M. and Farrell, E.P. (2009) 'Afforestation of industrial cutaway peatlands in the Irish midlands: site selection and species performance'. Irish Forestry, 66 :85-100.  
Dr Emmanuel Reynaud
Reynaud E.G. (2010) 'Joël de Rosnay Et l'homme créa la vie'. Revue des Questions Scientifique, 181 (4):472-472.  
Duplessy, C. and Reynaud, E.G. (2009) 'Efficacité et modalités d'utilisation d'un Programme d'Echange de Seringues (PES)'. Courrier des Addictions, 3 (11).  
Professor Mark S Rogers
Fischer, M., Appelhans, D., Schwarz, S., Klajnert, B., Bryszewska, M., Voit, B. and Rogers, M. (2010) 'Influence of surface functionality of poly(propylene imine) dendrimers on protease resistance and propagation of the scrapie prion protein'. Biomacromolecules, 11 (5):1314-1325. Available Online  
Dr Matthew Saunders
Davis, P., Clifton-Brown, J., Saunders, M., Lanigan, G., Wright, E., Fortune, T., Burke, J., Connolly, J., Jones, M. and Osborne, B. (2010) 'Assessing the effects of agricultural management practices on carbon fluxes: Spatial variation and the need for replicated estimates of Net Ecosystem Exchange'. Agricultural and Forest Meteorology, 150 :564-574.  
Professor Jeremy Charles Simpson
Heinz, S., Schüttrumpf, J., Simpson, J.C., Pepperkok, R., Nicolaes, G.A., Abriss, D., Milanov, P., Roth, S., Seifried, E. and Tonn, T. (2009) 'Factor VIII-eGFP fusion proteins with preserved functional activity for the analysis of the early secretory pathway of factor VIII'. Thrombosis and Haemostasis, 102 (5):925-935.  
Burgo, A., Sotirakis, E., Simmler, M-C., Chamot, C., Van der Linden, A., Simpson, J.C., Lanzetti, L., Proux-Gillardeaux, V. and Galli, T. (2009) 'Role of Varp, a Rab21 exchange factor and TI-VAMP/VAMP7 partner, in neurite growth'. Embo Reports, 10 (10):1117-1124.  
Dr Gavin Stewart
Collins, D., Winter, D.C., Hogan, A.M., Schirmer, L., Baird, A.W. and Stewart, G.S. (2010) 'Differential protein abundance and function of UT-B urea transporters in human colon'. American Journal of Physiology Gastrointestinal Physiology, 298 :G345-G351.  
Simmons, N.L., Chaudhry, A.S., Graham, C., Scriven, E.S., Thistlethwaite, A., Smith, C.P. and Stewart, G.S. (2009) 'Dietary regulation of ruminal bUT-B urea transporter expression and localization'. Journal of Animal Science, 87 :3288-3299.  
Dr Emma C Teeling
Puechmaille, S.J., Verdeyroux, P., Fuller, H., Gouilh, M.A., Bekaert, M. and Teeling, E.C. (2010) 'White-nose syndrome fungus (Geomyces destructans) in bat, France'. Emerging Infectious Diseases, 16 (2):290-293.  
Zhao, H., Ru, B., Teeling, E.C., Faulkes, C.G., Zhang, S. and Rossiter, S.J. (2009) 'Rhodopsin molecular evolution in mammals inhabiting low light environments'. PLoS ONE, 4 (12).  
Hayden, S., Bekaert, M., Crider, T.A., Mariani, S., Murphy, W.J. and Teeling, E.C. (2009) 'Ecological adaptation determines functional mammalian olfactory subgenomes'. Genome Research, 20 (1):1-9.  
Genome 10K Community of Scientists (including Teeling, E.C.) (2009) 'Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species'. Heredity, 100 (6):659-674.  
Dr Tom Wilkinson
Bermingham, J. and Wilkinson, T.L. (2010) 'The role of intracellular symbiotic bacteria in the amino acid nutrition of embryos from the black bean aphid Aphis fabae'. Entomologia Experimentalis Et Applicata, 134 :272-279.  
Wang, Y., Carolan, J., Hao, F-H., Nicholson, J., Wilkinson, T.L. and Douglas, A.E. (2010) 'Integrated metabonomic-proteomic analysis of an insect-bacterial symbiotic system'. Journal of Proteome Research, 9 (3):1257-1267.  
International Aphid Genome Consortium (including Carolan, J., Fitzroy, C., Reardon, K. and Wilkinson, T.L.) (2010) 'Genome Sequence of the Pea Aphid Acyrthosiphon pisum'. Plos Biology, 8 (2) (e1000313).  
Bermingham, J., Rabatel, A., Calevro, F., Vinuelas, J., Febvay, G., Charles, H., Douglas, A. and Wilkinson, T. (2009) 'Impact of Host Developmental Age on the Transcriptome of the Symbiotic Bacterium Buchnera aphidicola in the Pea Aphid (Acyrthosiphon pisum)'. Applied and Environmental Microbiology, 75 :7294-7297.  
Dr Jonathan Yearsley
Pérez-Barberíaa, F.P. and Yearsley, J.M. (2010) 'Sexual selection for fighting skills as a driver of sexual segregation in polygynous ungulates: an evolutionary model'. Animal Behaviour, 80 :745-755.  
Beale, C.M., Lennon, J.L., Yearsley, J.M, Brewer, M.J. and Elston, D.A. (2010) 'Regression analysis of spatial data'. Ecology Letters, 13 (2):246-264.  
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Other Journals
Professor Thomas Bolger
Murphy, P., Minogue, D., Ruane, E., French, P., Bolger, T. and Rodgers, M. (2010) 'Positive management options for dairy soiled water' TResearch, 5 (2):30-31.  
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Conference Publications
Dr Jan-Robert Baars
Fanning, P., Baars, J-R. and Gaffney, M.T. (2009) The biology of the eucalyptus leaf-beetle pest, Paropsisterna gloriosa (Coleoptera: Chrysomelidae) and relevance to Eucalyptus industry in Ireland SIPP autumn meeting,  
Professor Nicholas Clipson
DeMenezes, A.B., Clipson, N. and Doyle, E. (2010) Microbial ecology of dairy cows fed diets of contrasting methanogenic potential 13th International Symposium on Microbial Ecology, Seattle, USA,  
Storey, S., Clipson, N. and Doyle, E. (2010) Response of soil microbial community structure to polycyclic aromatic hydrocarbon contamination 13th International Symposium on Microbial Ecology, Seattle, USA,  
Saulski, P., Clipson, N. and Doyle, E.M. (2009) Effect of phenanthrene concentration on microbial community dynamics in a polluted soil Society for General Microbiology Meeting, Edinburgh, Scotland,  
Dr Evelyn Doyle
DeMenezes, A.B., Clipson, N. and Doyle, E. (2010) Microbial ecology of dairy cows fed diets of contrasting methanogenic potential 13th International Symposium on Microbial Ecology, Seattle, USA,  
Storey, S., Clipson, N. and Doyle, E. (2010) Response of soil microbial community structure to polycyclic aromatic hydrocarbon contamination 13th International Symposium on Microbial Ecology, Seattle, USA,  
Lynch, J.P., O'Kiely, P. and Doyle, E.M. (2010) Conservation characteristics of whole-crop, cob and stover silages made from contrasting maize cultivars harvested at sequential stages of maturity European Grassland Federation Conference, Kiel, Germany,  
Lynch, J.P., O'Kiely, P. and Doyle, E.M. (2010) Yield and agronomy of contrasting cultivars of maize harvested at sequential stages of maturity in 2008 and 2009 Irish Plant Scientists' Association Meeting (IPSAM), Dublin,  
Sawulski, P., Clipson, N. and Doyle, E.M. (2009) Effect of phenanthrene concentration on microbial community dynamics in a polluted soil Society for General Microbiology Meeting, Edinburgh, Scotland, 56  
Dr Tamara Hochstrasser
Hepp, S., Augustenborg, C., Dieterich, B., Hochstrasser, T., and Müller, C. (2010) Impacts of soil moisture on trace gas emissions from grassland: a case study on grassland in Northern Ireland 19th World Congress of Soil Science, Soil Solutions for a Changing World, Brisbane, Australia, 117 - 120  
Dr Mary Kelly-Quinn
Blacklocke, S., Bruen, M., de Eyto, E., Dibner, R., Drinan, T., Feeley, H., Harrison, S., Healy, M., Kelly-Quinn, M., O'Halloran,, J., Poole, R., Regan, J., Rogers, M. and Ryder, L. (2009) Tapping old knowledge trees and growing new ones: the HDROFOR Project strategy for developing predictive models of forest and water interactions in Ireland 13th International IWA Specialised Conference on Diffuse Pollution (DIPCON),  
Dr Mohammad Ibrahim Khalil
Khalil, M.I. (2010) Physical and chemical manipulation of urea fertiliser for reducing the emission of gaseous nitrogen species The 19th World Congress of Soil Science Soil Solution for a Changing World,  
Selbie, D., Lanigan, G.J., Di, H.J., Moir, J.L., Cameron, K.C., Khalil, M.I. and and Richards, K.G. (2010) Manipulating N excretion and the the effect on N2O emissions from grassland soil A Climate for Change: Opportunities for Carbon-Efficient Farming,  
Khalil, M.I. (2010) Added organic material and nitrogenous fertiliser interactively reduces global warming potentials of agricultural soils A Climate for Change: Opportunities for Carbon-Efficient Farming,  
Jahangir, M.M.R., Johnston, P., Khalil, M.I. and Richards, K.G. (2010) Emission of N2O from Irish Groundwaters A Climate for Change : Opportunities for Carbon-Efficient Farming,  
Jahangir, M.M.R., Johnston, P., Khalil, M.I. and Richards, K.G. (2010) Shallow groundwater denitrification capacity at three contrasting hydrogeological environments in Ireland The European Geosciences Union General Assembly 2010,  
Jahangir, M.M.R., Khalil, M.I., Cardenas, L., Hatch, D., Johnston, P. and Richards, K.G. (2010) Can subsoil denitrification reduce groundwater nitrate pollution and atmospheric N2O emissions? The European Geosciences Union General Assembly 2010,  
Jahangir, M.M.R., Johnston, P., Khlalil, M.I. and Richards, K.G. (2010) Assessing groundwater denitrification under two contrasting land uses in South-East Ireland International Conference jointly organized by the British Society of Animal Science and Agricultural Research Forum, Ireland,  
Cahalan, E., Richards, K.G., Mueller, C., Khalil, M.I., Laughlin, R., Watson, C., Hennessy, D. and Devaney, D. (2010) Can nitrification inhibitor DCD decrease nitrous oxide emissions from slurry applied to grassland? International Conference jointly organized by the British Society of Animal Science and Agricultural Research Forum, Ireland,  
Cahalan, E., Müller, C., Richards, K. G., Ernfors, M., Khalil, M.I., Watson, C.J., Laughlin, R.J., Hennessy, D. and Devaney, D. (2010) Assessing the Effect of Spreading Method and use of the Nitrification Inhibitor DCD, on Trace Gas Emissions from Grassland Amended with Cattle Slurry RAMIRAN 14th International Conference Proceedings- Challenges and Opportunities towards sustainable management, Lisbon, Portugal, 197 - 200  
Professor Christoph Mueller
Hepp, S., Augustenborg, C., Dieterich, B., Hochstrasser, T., and Müller, C. (2010) Impacts of soil moisture on trace gas emissions from grassland: a case study on grassland in Northern Ireland 19th World Congress of Soil Science, Soil Solutions for a Changing World, Brisbane, Australia, 117 - 120  
Cahalan, E., Richards, K.G., Mueller, C., Khalil, M.I., Laughlin, R., Watson, C., Hennessy, D. and Devaney, D. (2010) Can nitrification inhibitor DCD decrease nitous oxide emissions from slurry applied to grassland? International Conference jointly organized by the British Society of Animal Science and Agricultural Research Forum, Ireland,  
Müller, C., Rütting, T., and Laughlin, R.J. (2010) Quantification of process-based gross N transformation rates in soils based on 15N tracing - theory and application NitroEurope IP Open Science Conference - Reactive Nitrogen and the European Greenhouse Gas Balance, Solothurn, Switzerland, 16  
Cahalan, E., Müller, C., Richards, K. G., Ernfors, M., Khalil, M.I., Watson, C.J., Laughlin, R.J., Hennessy, D. and Devaney, D. (2010) Assessing the Effect of Spreading Method and use of the Nitrification Inhibitor DCD, on Trace Gas Emissions from Grassland Amended with Cattle Slurry RAMIRAN 14th International Conference Proceedings- Challenges and Opportunities towards sustainable management, Lisbon, Portugal, 197 - 200  
Dr. Florence Renou-Wilson
Renou-Wilson, F. (2010) Peatlands: a vital natural resource EPA National Research Conference Science into Action for Sustainable Ireland, Croke Park, Dublin, 15  
Dr Emmanuel Reynaud
Reynaud, E.G. and Tomancak, P. (2010) Meeting report: first light sheet based fluorescence microscopy workshop . In: Biotechnol J. ;5(8) eds. First light sheet based fluorescence microscopy workshop, 798 - 804  
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Other Publications
Dr Gareth Dyke
Dyke, G.J. (2010) Winged Victory: Modern birds, long thought to have arisen only after the dinosaurs perished, turn out to have lived alongside them. Scientific American 6th July 2010: Media. Available Online  
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