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UCD School of Agriculture & Food Science

'Digital Organic'. Image by Dr Miguel Nicolau.

'Digital Organic'. Image by Dr Miguel Nicolau.

UCD School of Agriculture & Food Science - Research Publications 2010/11

Below is the list of research publications for the UCD School of Agriculture & Food Science in the academic year 2010/11




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Books
Professor Maarten Nieuwenhuis
Nieuwenhuis, M. (2010) Terminology of Forest Management Planning. Terms and Definitions in English (equivalent terms in German, French, Spanish, Italian, Portuguese, Hungarian and Japanese). IUFRO World Series Vol. 9-en. 2nd (revised) Edition. Vienna: IUFRO.  

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Book Chapters
Professor James I Burke
Burke, J.I. (2011) 'Wheat in the Republic of Ireland' In: Alain Bonjean, William Angus, Maarten van Ginkel (eds). The World Wheat Book - a history of wheat breeding - vol 2. France: Lavoisier.   
Dr Ultan McCarthy
Mc Carthy, U., Ayalew, G., Butler, F., McDonnell, K. & Ward, S. (2011) 'Ultra High Frequency (UHF) Radio Frequency Identification in Food Supply Chain Management Applications' In: Regina M. Samson (eds). Supply-Chain Management: Theories, Activities/Functions and Problems. NY: Nova Science Publishers.   
Dr Aine Ni Dhubhain
Ni Dhubhain, A (2011) 'New forest owners - small-scale forestry and changes in forest owners' In: Ritter, E., Duksta, D (eds). New perspectives on people and forests. Dordrecht Heidleberg London New York: Springer.  
Mr Mick O'Sullivan
O'Sullivan, M. (2011) 'Analytical methods: Proximate and other Analyses' In: Fuquay JW, Fox PF and McSweeney PLH (eds). Encyclopaedia of Dairy Sciences, Second Edition, Vol.1. San Diego: Elsevier.  
ORiordan, E.D., Duggan,E., O¿Sullivan,M. and Noronha,N. (2011) 'Production of analogue cheeses' In: A.Y. Tamime (eds). Processed Cheese and Analogues. Chichester, UK: Wiley-Blackwell / society of dairy technology.  
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Books Edited
Professor Ronan Gormley
Gormley, T.R. and Brunton, N (Ed.). (2010) Fruit, Health and the Consumer. Dublin: Teagasc.   
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Peer Reviewed Journals
Dr Tommy Boland
Navarro-Villa, A., O¿Brien, M., López, S., Boland, T. and O¿Kiely, P (2011) 'In vitro rumen methane output of red clover and perennial ryegrass assayed using the gas production technique (GPT)'. Animal Feed Science and Technology, 168 :152-164.  
Foley, P.A., Crosson, P., Lovett, D.K., Boland, T.M., O¿Mara, F.P., Kenny, D.A.. (2011) 'Whole-farm systems modelling of greenhouse gas emissions from pastoral suckler beef cow production systems'. Agriculture, Ecosystems and Environment, 142 :222-230.  
Purcell, P.J., O¿Brien, M., Boland, T.M., O'Donovan, M. and O¿Kiely, P (2011) 'Impacts of herbage mass and sward allowance of perennial ryegrass sampled throughout the growing season on in vitro rumen methane production'. Animal Feed Science and Technology, 166 :405-411.  
Deighton, M.H., O¿Loughlin, B.M., Buckley F.and Boland, T.M. (2011) 'A simple method for pre-calibration storage of sulphurhexafluoride permeation tubes. Animal Feed Science and Technology'. Animal Feed Science and Technology, 166 :198-200.  
Navarro-Villa, A., O¿Brien, M., López, S., Boland, T.M. and O¿Kiely, P (2011) 'Modifications of a gas production technique for assessing in vitro rumen methane production from feedstuffs'. Animal Feed Science and Technology, 166 :163-174.  
Purcell, P.J., O¿Brien, M., Boland, T.M. and O¿Kiely, P. (2011) 'In vitro rumen methane output of perennial ryegrass samples prepared by freeze drying or thermal drying (40°C)'. Animal Feed Science and Technology, 166 :175-182.  
Crosson, P., Shalloob, L., O¿Brien, D., Lanigan, G.J., Foley, P.A., Boland, T.M. and Kenny, D.A.. (2011) 'A review of whole farm systems models of greenhouse gas emissions from beef and dairy cattle production systems'. Animal Feed Science and Technology, 166 :29-45.  
O'Neill, B.F., Deighton, M.H., O'Loughlin, B.M., Mulligan, F.J., Boland, T.M., O'Donovan, M., Lewis, E. (2011) 'Effects of a perennial ryegrass diet or total mixed ration diet offered to spring-calving Holstein-Friesian dairy cows on methane emissions, dry matter intake, and milk production'. Journal of dairy science, 94 (4):1941-1951.  
Creighton, P., Kennedy, E., Shalloo, L., Boland, T.M. and O¿ Donovan, M.. (2011) 'A survey analysis of grassland dairy farming in Ireland, investigating grassland management, utilisation , uptake of grassland research technologies and the frequency and methods of sward renewal'. Grass and Forage Science, 66 :251-264.  
Ryan W, Hennessy D, Murphy JJ, Boland TM, Shalloo L (2011) 'A model of nitrogen efficiency in contrasting grass-based dairy systems'. Journal of dairy science, 94 (2):1032-1044.  
Murphy, D.P., O'Doherty, J.V., Boland, T.M., O'Shea, C.J., Callan, J.J., Pierce, K.M., Lynch, M.B. (2011) 'The effect of benzoic acid concentration on nitrogen metabolism, manure ammonia and odour emissions in finishing pigs'. Animal Feed Science and Technology, 163 (2-4):194-199.   
Wims CM, Deighton MH, Lewis E, O'Loughlin B, Delaby L, Boland TM, O'Donovan M (2010) 'Effect of pregrazing herbage mass on methane production, dry matter intake, and milk production of grazing dairy cows during the mid-season period'. Journal of dairy science, 93 (10):4976-4985.  
Kelly, A. K.,McGee, M.,Crews, D. H.,Sweeney, T.,Boland, T. M.,Kenny, D. A. (2010) 'Repeatability of feed efficiency, carcass ultrasound, feeding behavior, and blood metabolic variables in finishing heifers divergently selected for residual feed intake'. Journal of Animal Science, 88 (1010):3214-32253214.   
Dr Lorraine Brennan
Osorio, M.T., Moloney, A.P., Brennan, L. and Monahan, F.J. (2011) 'Authentication of beef production systems using a metabolomics based approach'. Animal  
Jin Y, Amaral A, McCann A, Brennan L (2011) 'Homocysteine levels impact directly on epigenetic reprogramming in astrocytes'. Neurochemistry international .  
Rubio-Aliaga I, de Roos B, Sailer M, McLoughlin GA, Boekschoten MV, van Erk M, Bachmair EM, Van Schothorst EM, Keijer J, Coort SL, Evelo C, Gibney MJ, Daniel H, Muller M, Kleemann R, Brennan L (2011) 'Alterations in hepatic one-carbon metabolism and related pathways following a high fat dietary intervention'. Genomics .  
O'Sullivan A, Gibney MJ, Brennan L (2011) 'Dietary intake patterns are reflected in metabolomic profiles: potential role in dietary assessment studies'. Clinical Nutrition, 93 (2):314-321.  
Fan, Y., Murphy, T.B., Byrne, J., Brennan, L., Fitzpatrick, J. and Watson, R.W.G. (2011) 'Applying Random Forests to identify biomarker panels in serum 2D-DIGE data for the detection and staging of prostate cancer'. Journal of Proteome Research, 10 (3):1361-1373.  
O'Sullivan A, Gibney MJ, Connor AO, Mion B, Kaluskar S, Cashman KD, Flynn A, Shanahan F, Brennan L (2011) 'Biochemical and metabolomic phenotyping in the identification of a vitamin D responsive metabotype for markers of the metabolic syndrome'. Molecular nutrition & food research .  
O'Sullivan, A,Balducci, D,Paradisi, F,Cashman, KD,Gibney, MJ,Brennan, L (2011) 'Effect of supplementation with vitamin D-3 on glucose production pathways in human subjects'. Molecular nutrition & food research, 55 :1018-1025.  
Nyamundanda, G., Brennan, L and Gormley, I.C. (2010) 'Probabilistic principal component analysis for metabolomic data'. BMC Bioinformatics, 11 (571).  
Professor James I Burke
Rueangritsarakul,K., Abdalla,M.,Roth, B.,Burke,J.I., Williams, M (2011) 'Simulating the present and future effectiveness of Reduced tillage-cover crop management as a mitigation option to reduce N2O fluxes from arable soils'. Geoderma .  
Dr Owen Doyle
Doyle, O.P.E., King, C., O'Haire, R., Moore, T., NiChualain, D. and Carlise, W. (2011) 'The Effect of a Peat Based Growing Medium, with Varying Fertiliser Levels and Amended with Composted Green Waste (CGW), on the Growth and Development of Tomato (Lycopersicon lycoperiscum (L.) Karsten) Plants'. Acta Horticulturae, 891 :93-102.  
NiChualain, D., Carlile, W., Hynes, C., Phelan, G., O'Haire, R. and Doyle, O.P.E. (2011) 'Nutrient Status of Co-Composted Indigenous Irish Wastes, and Their Use in Growing Media'. Acta Horticulturae, 891 :85-92.  
Professor Alexander Evans
Hutchinson I, de Veth MJ, Stanton C, Dewhurst RJ, Lonergan P, Evans AC, Butler ST (2011) 'Effects of lipid-encapsulated conjugated linoleic acid supplementation on milk production, bioenergetic status and indicators of reproductive performance in lactating dairy cows'. Journal of Dairy Research, 78 (3):308-317.  
Mamo S, Carter F, Lonergan P, Leal CL, Al Naib A, McGettigan P, Mehta JP, Evans AC, Fair T (2011) 'Sequential analysis of global gene expression profiles in immature and in vitro matured bovine oocytes: potential molecular markers of oocyte maturation'. Genomics, 12 .  
S Walsh, EJ Williams, ACO Evans (2011) 'A review of the causes of poor fertility in high milk producing dairy cows'. Animal Reproduction Science, 123 :127-138.  
93 JJ Ireland, GW Smith, D Scheetz, F Jimenez-Krassel, JK Folger, JLH Ireland, F Mossa, P Lonergan, ACO Evans (2011) 'Does size matter in females? An overview of the impact of the high variation in the ovarian reserve on ovarian function and fertility, utility of AMH as a diagnostic marker for fertility, and causes of variation in the ovarian reserve in cattle'. Reproduction Fertility and Development, 23 :1-14.  
Mossa F, Jimenez-Krassel F, Folger JK, Ireland JL, Smith GW, Lonergan P, Evans AC, Ireland JJ (2010) 'Evidence that high variation in antral follicle count during follicular waves is linked to alterations in ovarian androgen production in cattle'. Reproduction (Cambridge, England), 140 (5):713-720.  
Evans AC, Mossa F, Fair T, Lonergan P, Butler ST, Zielak-Steciwko AE, Smith GW, Jimenez-Krassel F, Folger JK, Ireland JL, Ireland JJ (2010) 'Causes and consequences of the variation in the number of ovarian follicles in cattle'. Society of Reproduction and Fertility supplement, 67 :421-429.  
Dr Alan Fahey
Mc Hugh, N,Evans, RD,Amer, PR,Fahey, AG,Berry, DP (2011) 'Genetic parameters for cattle price and body weight from routinely collected data at livestock auctions and commercial farms'. Journal of Animal Science, 89 :29-39.  
Dr Trudee Fair
Okumu LA, Fair T, Szekeres-Bartho J, O'Doherty AM, Crowe MA, Roche JF, Lonergan P, Forde N. (2011) 'Endometrial expression of progesterone induced blocking factor and galectins-1, -3, -9 and -3 binding protein in the luteal phase and early pregnancy in cattle'. Physiological genomics, 43 :903-910.  
Mamo S, Mehta JP, McGettigan P, Fair T, Spencer TE, Bazer FW, Lonergan P (2011) 'RNA Sequencing Reveals Novel Gene Clusters in Bovine Conceptuses Associated with Maternal Recognition of Pregnancy and Implantation'. Biology of reproduction .  
Aparicio IM, Garcia-Herreros M, O'Shea LC, Hensey C, Lonergan P, Fair T (2011) 'Expression, regulation, and function of progesterone receptors in bovine cumulus oocyte complexes during in vitro maturation'. Biology of reproduction, 84 (5):910-921.  
Mamo S, Carter F, Lonergan P, Leal CL, Al Naib A, McGettigan P, Mehta JP, Evans AC, Fair T (2011) 'Sequential analysis of global gene expression profiles in immature and in vitro matured bovine oocytes: potential molecular markers of oocyte maturation'. Genomics, 12 .  
Mamo S, Carter F, Lonergan P, Leal CL, Al Naib A, McGettigan P, Mehta JP, Evans AC, Fair T. (2011) 'Sequential analysis of global gene expression profiles in immature and in vitro matured bovine oocytes: potential molecular markers of oocyte maturation'. BMC Genomics, 16 (12).  
Al Naib A, Mamo S, O'Gorman GM, Lonergan P, Swales A, Fair T. (2011) 'Regulation of non-classical major histocompatability complex class I mRNA expression in bovine embryos'. JOURNAL OF REPRODUCTIVE IMMUNOLOGY, 91 (1-2):31-40.  
Evans AC, Mossa F, Fair T, Lonergan P, Butler ST, Zielak-Steciwko AE, Smith GW, Jimenez-Krassel F, Folger JK, Ireland JL, Ireland JJ (2010) 'Causes and consequences of the variation in the number of ovarian follicles in cattle'. Society of Reproduction and Fertility supplement, 67 :421-429.  
Dr Emma Feeney
Feeney E, O'Brien S, Scannell A, Markey A, Gibney ER (2010) 'Genetic variation in taste perception: does it have a role in healthy eating?'. The Proceedings of the Nutrition Society, :1-9.  
Dr Mary Forrest
Forrest, M. (2010) 'Nurseries and nurserymen in Ireland from the early eighteenth to the early'. Studies in the History of Gardens and Designed Landscapes An International Quarterly, 30 (4):323-336.   
Darcy, Joseph and Forrest, Mary (2010) 'Carpinus betulus cv Fastigiata ¿ their growth and development in Dublin'. Arboricultural Journal, 33 :77-82.  
Dr John Fry
Whelan, Jackie & John Fry (2011) 'The Lack of SEA to Support Agri-Environmental Objectives in Ireland's Rural Environment Protection Scheme'. Journal of Environmental Assessment Policy and Management (JEAPM), 13 (1):101-127.  
Gonzalez, A et al. (2011) 'Applying geographic information systems to support strategic environmental assessment: Opportunities and limitations in the context of Irish land-use plans'. Environmental Impact Assessment Review, 31 :368-381.  
Whelan, J., Fry, J. and Green, S. (2011) 'The changing concept of landscape during the evolution of the Rural Environment Protection Scheme in the Republic of Ireland'. Tearmann - the Irish Journal of Agri-Environmental Research, 8 :25-44.  
Dr Eileen Gibney
James L Mills, Tonia C Carter, John M Scott, James F Troendle, Eileen R Gibney, Barry Shane, Peadar N Kirke, Per M Ueland, Lawrence C Brody, and Anne M Molloy (2011) 'Do high blood folate concentrations exacerbate metabolic abnormalities in people with low vitamin B-12 status?'. American Journal of Clinical Nutrition .  
Feeney E, O'Brien S, Scannell A, Markey A, Gibney ER (2010) 'Genetic variation in taste perception: does it have a role in healthy eating?'. The Proceedings of the Nutrition Society, :1-9.  
Professor Mike Gibney
Rubio-Aliaga I, de Roos B, Sailer M, McLoughlin GA, Boekschoten MV, van Erk M, Bachmair EM, Van Schothorst EM, Keijer J, Coort SL, Evelo C, Gibney MJ, Daniel H, Muller M, Kleemann R, Brennan L (2011) 'Alterations in hepatic one-carbon metabolism and related pathways following a high fat dietary intervention'. Genomics .  
O'Sullivan A, Gibney MJ, Brennan L (2011) 'Dietary intake patterns are reflected in metabolomic profiles: potential role in dietary assessment studies'. Clinical Nutrition, 93 (2):314-321.  
O'Sullivan A, Gibney MJ, Connor AO, Mion B, Kaluskar S, Cashman KD, Flynn A, Shanahan F, Brennan L (2011) 'Biochemical and metabolomic phenotyping in the identification of a vitamin D responsive metabotype for markers of the metabolic syndrome'. Molecular nutrition & food research .  
Hall B, Steiling W, Safford B, Coroama M, Tozer S, Firmani C, McNamara C, Gibney M (2010) 'European Consumer Exposure To Cosmetic Products a Framework for Conducting Population Exposure Assessments Part 2'. Food Chemistry .  
2. Tierney AC, McMonagle J, Shaw DI, Gulseth HL, Helal O, Saris WH, Paniagua JA, Go??bek-Leszczyñska I, Defoort C, Williams CM, Karsltröm B, Vessby B, Dembinska-Kiec A, López-Miranda J, Blaak EE, Drevon CA, Gibney MJ, Lovegrove JA, Roche HM. (2010) 'Effects of dietary fat on modification of insulin sensitivity and on other risk factors of the metabolic syndrome - Lipgene a European randomized dietary intervention study'. Int J Obesity, e pub ahead of print .  
4. Leite JC, Hearty AP, Nugent AP, Gibney MJ. (2010) 'A method for assessing dietary intakes of n-3 long-chain polyunsaturated fatty acids and trans fatty acids in an Irish adult population'. International Journal of Food Science and Nutrition, 61 (6):583-599.  
iménez-Gómez Y, Marín C, Peérez-Martínez P, Hartwich J, Malczewska-Malec M, Golabek I, Kiec-Wilk B, Cruz-Teno C, Rodríguez F, Gómez P, Gómez-Luna MJ, Defoort C, Gibney MJ, Pérez-Jiménez F, Roche HM, López-Miranda J. (2010) 'A low-fat, high-complex carbohydrate diet supplemented with long-chain (n-3) fatty acids alters the postprandial lipoprotein profile in patients with metabolic syndrome'. Journal of Nutrition, 140 (9):1595-1601.  
Professor Ronan Gormley
Gormley, T.R. (2010) 'Ethics and sustainability in the seafood chain'. Food Science and Technology, 24 (3):14-17.  
Dr Emmeline Hill
Tozaki T, Sato F, Hill EW, Miyake T, Endo Y, Kakoi H, Gawahara H, Hirota K, Nakano Y, Nanbo Y, Kurosawa M (2011) 'Sequence variants at the myostatin gene locus influence the body composition of Thoroughbred horses'. The Open Veterinary Science Journal, null (Aug11):null-null.   
Tozaki T, Hill EW, Hirota K, Kakoi H, Gawahara H, Miyake T, Sugita S, Hasegawa T, Ishida N, Nakano Y, Kurosawa M. (2011) 'A cohort study of racing performance in Japanese Thoroughbred racehorses using genome information on ECA18'. Animal Genetics, null (null):null-null.   
Hill, E.W., Gu, J., McGivney, B.A., MacHugh, D.E. (2010) 'Targets of selection in the Thoroughbred genome contain exercise-relevant gene SNPs associated with elite racecourse performance'. Animal Genetics, 41 (Suppl 2):56-63.   
Gu J, MacHugh DE, McGivney BA, Park SDE, Katz LM, Hill EW (2010) 'Association of sequence variants in CKM (creatine kinase, muscle) and COX4I2 (cytochrome c oxidase, subunit 4, isoform 2) genes with racing performance in Thoroughbred horses'. Equine Veterinary Journal Supplement, 42 (38):569-575.   
Fonseca, R.G., Kenny, D., Hill, E.W., Katz, L.M. (2010) 'The association of various speed indices to training responses in Thoroughbred flat racehorses measured with a global positioning and heart rate monitoring system'. Equine Veterinary Journal Supplement, 42 (38):51-57.   
Hill, E.W., Eivers, S.S., McGivney, RG., Fonseca, GU. J., Smith, N.A., Browne, J.A., MacHugh, D.E., Katz, L.M. (2010) 'Moderate and high intensity sprint exercise induce differential responses in COX4I2 and PDK4 gene expression in Thoroughbred horse skeletal muscle'. Equine Veterinary Journal Supplement, 42 (38):576-581.   
Martin, A.M., Elliott, J.A., Duffy, P., Blake, C., Attia, S.B., Browne, J.A., Katz, L.M., Gath, V., McGivney, B.A., Hill, E.W., Murphy, B.A. (2010) 'Circadian regulation of locomotor activity and skeletal muscle gene expression in the horse'. Journal of Applied Physiology, 109 (5):1328-1336.   
Dr Jean-Christophe Jacquier
Harbourne, N., Jacquier, J.C., O'Riordan, D (2011) 'Effects of addition of phenolic compounds on the acid gelation of milk'. International Dairy Journal, 21 (3):185-191.  
Marete, E.N., Jacquier, J.-C., O'Riordan, D (2011) 'Feverfew as a source of bioactives for functional foods: Storage stability in model beverages'. Journal of Functional Foods, 3 (1):38-43.  
Dr Alan Kelly
Kelly, AK,Mcgee, M,Crews, DH,Lynch, CO,Wylie, AR,Evans, RD,Kenny, DA (2011) 'Relationship between body measurements, metabolic hormones, metabolites and residual feed intake in performance tested pedigree beef bulls'. Livestock Science, 135 :8-16.  
Kelly, AK,Waters, SM,McGee, M,Fonseca, RG,Carberry, C,Kenny, DA (2011) 'mRNA expression of genes regulating oxidative phosphorylation in the muscle of beef cattle divergently ranked on residual feed intake'. Physiological genomics, 43 :12-23.  
Magee, D.A., Berkowicz, E.W., Sikora, K.M., Sweeney, T., Kenny, D.A., Kelly, A.K., Evans, R.D., Wickham, B.W., Bradley, D.G., Spillane, C., MacHugh, D.E. (2010) 'High concordance of bovine single nucleotide polymorphism genotypes generated using two independent genotyping strategies'. Animal biotechnology, 21 (4):257-262.   
Professor Patrick Lonergan
Hutchinson I, de Veth MJ, Stanton C, Dewhurst RJ, Lonergan P, Evans AC, Butler ST (2011) 'Effects of lipid-encapsulated conjugated linoleic acid supplementation on milk production, bioenergetic status and indicators of reproductive performance in lactating dairy cows'. Journal of Dairy Research, 78 (3):308-317.  
Clemente M, Lopez-Vidriero I, O'Gaora P, Mehta JP, Forde N, Gutierrez-Adan A, Lonergan P, Rizos D (2011) 'Transcriptome changes at the initiation of elongation in the bovine conceptus'. Biology of reproduction, 85 (2):285-295.  
Okumu LA, Fair T, Szekeres-Bartho J, O'Doherty AM, Crowe MA, Roche JF, Lonergan P, Forde N. (2011) 'Endometrial expression of progesterone induced blocking factor and galectins-1, -3, -9 and -3 binding protein in the luteal phase and early pregnancy in cattle'. Physiological genomics, 43 :903-910.  
Okumu LA, Fair T, Szekeres-Bartho J, O'Doherty AM, Crowe MA, Roche JF, Lonergan P, Forde N (2011) 'Endometrial expression of progesterone-induced blocking factor and galectins-1, -3, -9, and -3 binding protein in the luteal phase and early pregnancy in cattle'. Genomics, 43 (14):903-910.  
Mamo S, Mehta JP, McGettigan P, Fair T, Spencer TE, Bazer FW, Lonergan P. (2011) 'RNA Sequencing Reveals Novel Gene Clusters in Bovine Conceptuses Associated with Maternal Recognition of Pregnancy and Implantation'. Biology of Reproduction .  
Forde N, Carter F, Spencer TE, Bazer FW, Sandra O, Mansouri-Attia N, Okumu LA, McGettigan PA, Mehta JP, McBride R, O'Gaora P, Roche JF, Lonergan P (2011) 'Conceptus-induced changes in the endometrial transcriptome: how soon does the cow know she is pregnant?'. Biology of reproduction, 85 (1):144-156.  
Al Naib A, Hanrahan JP, Lonergan P, Fair S (2011) 'In vitro assessment of sperm from bulls of high and low field fertility'. Theriogenology, 76 (1):161-167.  
Mamo S, Mehta JP, McGettigan P, Fair T, Spencer TE, Bazer FW, Lonergan P (2011) 'RNA Sequencing Reveals Novel Gene Clusters in Bovine Conceptuses Associated with Maternal Recognition of Pregnancy and Implantation'. Biology of reproduction .  
Bermejo-Alvarez P, Rizos D, Lonergan P, Gutierrez-Adan A (2011) 'Transcriptional sexual dimorphism in elongating bovine embryos: implications for XCI and sex determination genes'. Reproduction (Cambridge, England), 141 (6):801-808.  
Lonergan P (2011) 'Autocrine embryotropins in embryo development: controlling one's own fate'. Biology of reproduction, 84 (6):1075-1076.  
Bermejo-Alvarez P, Rizos D, Lonergan P, Gutierrez-Adan A (2011) 'Transcriptional sexual dimorphism during preimplantation embryo development and its consequences for developmental competence and adult health and disease'. Reproduction (Cambridge, England), 141 (5):563-570.  
O'Meara CM, Murray JD, Mamo S, Gallagher E, Roche J, Lonergan P (2011) 'Gene silencing in bovine zygotes: siRNA transfection versus microinjection'. Reproduction, fertility, and development, 23 (4):534-543.  
Aparicio IM, Garcia-Herreros M, O'Shea LC, Hensey C, Lonergan P, Fair T (2011) 'Expression, regulation, and function of progesterone receptors in bovine cumulus oocyte complexes during in vitro maturation'. Biology of reproduction, 84 (5):910-921.  
Arias-Alvarez M, Bermejo-Alvarez P, Gutierrez-Adan A, Rizos D, Lorenzo PL, Lonergan P (2011) 'Effect of leptin supplementation during in vitro oocyte maturation and embryo culture on bovine embryo development and gene expression patterns'. Theriogenology, 75 (5):887-896.  
Mamo S, Carter F, Lonergan P, Leal CL, Al Naib A, McGettigan P, Mehta JP, Evans AC, Fair T. (2011) 'Sequential analysis of global gene expression profiles in immature and in vitro matured bovine oocytes: potential molecular markers of oocyte maturation'. BMC Genomics, 16 (12).  
Clemente, M,Lopez-Vidriero, I,O'Gaora, P,Mehta, JP,Forde, N,Gutierrez-Adan, A,Lonergan, P,Rizos, D (2011) 'Transcriptome Changes at the Initiation of Elongation in the Bovine Conceptus'. Biology of reproduction, 85 :285-295.  
Al Naib A, Mamo S, O'Gorman GM, Lonergan P, Swales A, Fair T. (2011) 'Regulation of non-classical major histocompatability complex class I mRNA expression in bovine embryos'. JOURNAL OF REPRODUCTIVE IMMUNOLOGY, 91 (1-2):31-40.  
Carter F, Rings F, Mamo S, Holker M, Kuzmany A, Besenfelder U, Havlicek V, Mehta JP, Tesfaye D, Schellander K, Lonergan P (2010) 'Effect of elevated circulating progesterone concentration on bovine blastocyst development and global transcriptome following endoscopic transfer of in vitro produced embryos to the bovine oviduct'. Biology of reproduction, 83 (5):707-719.  
Mossa F, Jimenez-Krassel F, Folger JK, Ireland JL, Smith GW, Lonergan P, Evans AC, Ireland JJ (2010) 'Evidence that high variation in antral follicle count during follicular waves is linked to alterations in ovarian androgen production in cattle'. Reproduction (Cambridge, England), 140 (5):713-720.  
Evans AC, Mossa F, Fair T, Lonergan P, Butler ST, Zielak-Steciwko AE, Smith GW, Jimenez-Krassel F, Folger JK, Ireland JL, Ireland JJ (2010) 'Causes and consequences of the variation in the number of ovarian follicles in cattle'. Society of Reproduction and Fertility supplement, 67 :421-429.  
Forde N, Beltman ME, Lonergan P, Diskin M, Roche JF, Crowe MA (2010) 'Oestrous cycles in Bos taurus cattle'. Animal Reproduction Science .  
Forde N, Beltman ME, Duffy GB, Duffy P, Mehta JP, O'Gaora P, Roche JF, Lonergan P, Crowe MA (2010) 'Changes in the Endometrial Transcriptome During the Bovine Estrous Cycle: Effect of Low Circulating Progesterone and Consequences for Conceptus Elongation'. Biology of Reproduction .  
Dr Bridget Lynch
O¿Shea, C.J., Lynch, B., Lynch, M.B., Callan, J.J., & O¿Doherty, J.V. (2011) 'Modification of selected bacteria and markers of protein fermentation in the distal gastrointestinal tract of pigs upon consumption of chitosan is accompanied by heightened manure odor emissions'. Journal of Animal Science, 89 :1366-1375.  
O'Shea, C.J., Sweeney, T., Lynch, M.B., Gahan, D.A., Flynn, B.A., O'Doherty, J.V. (2011) 'The effect of introducing purified β-glucans to a wheat-based diet on total tract digestibility and gaseous manure emissions from pigs as compared with consumption of a β-glucan-rich, barley-based diet'. Animal Feed Science and Technology, 165 :95-104.  
O¿Shea, C.J., Lynch, M.B., Callan, J.J. & O¿Doherty, J.V. (2011) 'Comparison of exogenous β-glucan supplementation to a wheat-based diet with an oat-based diet on intestinal fermentation and manure odour and ammonia emissions from finisher pigs'. Journal of Animal Science, 89 :438-447.  
Murphy, D.P., O¿Doherty, J.V., Boland, T.M., O¿Shea, C.J., Callan, J.J., Pierce, K.M. and Lynch, M.B. (2011) 'The effect of benzoic acid concentration on nitrogen metabolism, manure ammonia and odour emissions in finishing pigs'. Animal Feed Science and Technology, 163 :194-199.  
Dr James Lyng
Caminiti, I.M., Noci, F., Muñoz, A., Whyte, P., Morgan, D.J., Cronin, D.A., Lyng, J.G. (2011) 'Impact of selected combinations of non-thermal processing technologies on the quality of an apple and cranberry juice blend'. Food Chemistry, 124 (4):1387-1392.   
Muñoz, A., Palgan, I., Noci, F., Morgan, D.J., Cronin, D.A., Whyte, P., Lyng, J.G. (2011) 'Combinations of High Intensity Light Pulses and Thermosonication for the inactivation of Escherichia coli in orange juice'. Food Microbiology, 28 (6):1200-1204.   
Palgan, I., Caminiti, I.M., Muñoz, A., Noci, F., Whyte, P., Morgan, D.J., Cronin, D.A., Lyng, J.G. (2011) 'Combined effect of selected non-thermal technologies on Escherichia coli and Pichia fermentans inactivation in an apple and cranberry juice blend and on product shelf life'. International Journal of Food Microbiology, 151 (1):1-6.   
Caminiti, I.M., Palgan, I., Noci, F., Muñoz, A., Whyte, P., Cronin, D.A., Morgan, D.J., Lyng, J.G. (2011) 'The effect of pulsed electric fields (PEF) in combination with high intensity light pulses (HILP) on Escherichia coli inactivation and quality attributes in apple juice'. Innovative Food Science and Emerging Technologies, 12 (2):118-123.   
Zell, M,Lyng, JG,Morgan, DJ,Cronin, DA (2011) 'Minimising heat losses during batch ohmic heating of solid food'. Food and Bioproducts Processing, 89 :128-134.  
Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A., Fanning, S., Whyte, P (2011) 'Efficacy of high intensity pulsed light for the microbiological decontamination of poultry, associated packaging and contact surfaces'. Foodborne Pathogens and Disease, 8 :109-117.  
Haughton, P.N., Lyng, J., Cronin, D.A., Morgan, D.J., Fanning, S., Whyte, P. (2011) 'Efficacy of UV light treatment for the microbiological decontamination of chicken, associated packaging and contact surfaces'. Journal of Food Protection, 74 :565-572.  
Professor David MacHugh
Taraktsoglou, M., Szalabska, U., Magee, D.A., Browne, J.A., Sweeney, T., Gormley, E., MacHugh, D.E. (2011) 'Transcriptional profiling of immune genes in bovine monocyte-derived macrophages exposed to bacterial antigens'. Veterinary Immunology and Immunopathology, 140 :130-139.   
Berkowicz, E.W., Magee, D.A., Sikora, K.M., Berry, D.P., Howard, D.J., Mullen, M.P., Evans, R.D., Spillane, C., MacHugh, D.E. (2011) 'Single nucleotide polymorphisms at the imprinted bovine insulin-like growth factor 2 (IGF2) locus are associated with dairy performance in Irish Holstein-Friesian cattle'. Journal of Dairy Research, 78 :1-8.   
Waters, S.M., McCabe, M.S., Howard, D.J., Giblin, L., Magee, D.A., MacHugh, D.E., Berry, D.P. (2011) 'Associations between newly discovered polymorphisms in the Bos taurus growth hormone receptor gene and performance traits in Holstein-Friesian dairy cattle'. Animal Genetics, 42 :39-49.   
Sikora K.M., Magee D.A., Berkowicz E.W., Berry D.P., Howard D.J., Mullen M.P., Evans R.D., Machugh D.E., Spillane C. (2011) 'DNA sequence polymorphisms within the bovine guanine nucleotide-binding protein Gs subunit alpha (Gsα)-encoding (GNAS) genomic imprinting domain are associated with performance traits'. BMC Genetics, 12 .   
Magee, D.A.,Berry, D.P., Berkowicz, E.W., Sikora, K.M., Howard, D.J., Mullen, M.P., Evans, R.D.,Spillane, C., MacHugh, D.E. (2011) 'Single nucleotide polymorphisms within the bovine DLK1-DIO3 imprinted domain are associated with economically important production traits in cattle'. JOURNAL OF HEREDITY, 102 :94-101.   
Hill, E.W., Gu, J., McGivney, B.A., MacHugh, D.E. (2010) 'Targets of selection in the Thoroughbred genome contain exercise-relevant gene SNPs associated with elite racecourse performance'. Animal Genetics, 41 (Suppl 2):56-63.   
Magee, D.A., Berkowicz, E.W., Sikora, K.M., Sweeney, T., Kenny, D.A., Kelly, A.K., Evans, R.D., Wickham, B.W., Bradley, D.G., Spillane, C., MacHugh, D.E. (2010) 'High concordance of bovine single nucleotide polymorphism genotypes generated using two independent genotyping strategies'. Animal biotechnology, 21 (4):257-262.   
Magee, D.A., Berry, D.P., Berkowicz, E.W., Sikora, K.M., Howard, D.J., Mullen, M.P., Evans, R.D., Spillane, C., Machugh, D.E. (2010) 'Single nucleotide polymorphisms within the bovine DLK1-DIO3 imprinted domain are associated with economically important production traits in cattle'. J Hered  
Dr Ultan McCarthy
Mc Carthy, U., Ayalew, G., Butler, F., McDonnell, K. & Ward, S. (2010) 'The Effect of increased Interrogation zone, Reader Antenna Polarisation and application factors in the performance of UHF RFID tag detection on Modified Atmosphere Packaged Meat'. Packaging Technology and Science, 23 (6):339-350.   
Dr Barry John McMahon
Farrell, E.P. & McMahon, B.J. (2011) 'The threat of rabies in Ireland'. Irish Veterinary Journal, 64 :204-205.  
Professor Frank Monahan
Osorio, M.T., Moloney, A.P., Brennan, L. and Monahan, F.J. (2011) 'Authentication of beef production systems using a metabolomics based approach'. Animal  
Caprioli, I., O'Sullivan, M. and Monahan, F.J. (2011) 'Interference of sodium caseinate in the TBARS assay'. Food Chemistry, 124 :1284-1287.   
Osorio, M.T, Moloney, A.P., Schmidt, O. and Monahan, F.J. (2011) 'Multielement isotope analysis of bovine muscle for determination of international geographical origin of meat'. Journal of Agricultural and Food Chemistry, 59 (7):3285-3294.   
Osorio, M.T, Moloney, A.P., Schmidt, O. and Monahan, F.J. (2011) 'Beef authentication and retrospective dietary verification using stable isotope ratio analysis of bovine muscle and tail hair'. Journal of Agricultural and Food Chemistry, 59 (7):3295-3305.   
Dunne, P.G., Rogalski, J., Childs, S, Monahan, F.J., Kenny, D.A. and Moloney, A.P. (2011) 'Long chain n-3 polyunsaturated fatty acid concentration and color and lipid stability of muscle from heifers offered a ruminally protected fish oil supplement'. Journal of Agricultural and Food Chemistry, 59 :5015-5025.   
Rohrle FT, Moloney AP, Black A, Osorio MT, Sweeney T, Schmidt O and Monahan FJ (2011) 'alpha-Tocopherol stereoisomers in beef as an indicator of vitamin E supplementation in cattle diets'. Food Chemistry, 124 (3):935-940.   
Harrison SM, Schmidt O, Moloney AP, Kelly SD, Rossmann A, Schellenberg A, Camin F, Perini M, Hoogewerff J and Monahan FJ (2011) 'Tissue turnover in ovine muscle and lipids as recorded by multiple (H, C, O, S) stable isotope ratios'. Food Chemistry, 124 (1):291-297.   
Luciano G., Moloney AP, Priolo A, Röhrle FT, Vasta V, Biondi L, L?pez-Andrés P, Grasso S, Monahan FJ (2011) 'Pro-oxidant and antioxidant components in muscle and the oxidative stability of beef from cattle grown on forage or concentrate-based rations'. Journal of Animal Science, 89 :3759-3768.   
Vasta, V., Luciano, G., Dimauro, C., R¨ohrle, F., Priolo, A., Monahan, F.J. & Moloney, A.P. (2011) 'The volatile profile of longissimus dorsi muscle of heifers fed pasture, pasture silage or cereal concentrate: implication for dietary discrimination'. Meat Science, 87 (3):282-289.   
Röhrle, F.T., Moloney, A.P., Osorio, M.T., Luciano, G., Priolo, A., Caplan, P., and Monahan, F.J. (2011) 'Carotenoids, colour and reflectance parameters in bovine adipose tissue to discriminate between feeding systems'. Meat Science, 88 :347-353.   
Luciano, G., Vasta, V., Monahan, F.J., López-Andrés, P., Biondi, L., Lanza, M., Priolo, A. (2011) 'Antioxidant status, colour stability and myoglobin resistance to oxidation of longissimus dorsi muscle from lambs fed a tannin-containing diet'. Food Chemistry, 124 :1036-1042.   
Noci, F., Monahan, F.J. and Moloney, A.P. (2011) 'The fatty acid profile of muscle and adipose tissue of lambs fed camelina or linseed as oil or seeds'. Animal, 5 (1):134-147.   
Auerswald K, Rossmann A, Schäufele R, Schwertl M, Monahan FJ and Hans Schnyder H. (2011) 'Does natural weathering change the stable isotope composition (2H, 13C, 15N, 18O and 34S) of cattle hair?'. Rapid Communications in Mass Spectrometry, 25 :1-8.   
Dunne, P.D., Monahan, F.J. and Moloney, A.P. (2011) 'Current perspectives on the darker beef often reported from extensively-managed cattle: does physical activity play a significant role?'. Livestock Science, 142 :1-22.   
Dr Barbara Murphy
Murphy BA, Martin AM, Furney P, Elliott JA. (2011) 'Absence of a melatonin rhythm under acutely extended darkness in the horse. Journal of Circadian Rhythms'. Journal of circadian rhythms, 9: 3 .   
Martin, A.M., Elliott, J.A., Duffy, P., Blake, C., Attia, S.B., Browne, J.A., Katz, L.M., Gath, V., McGivney, B.A., Hill, E.W., Murphy, B.A. (2010) 'Circadian regulation of locomotor activity and skeletal muscle gene expression in the horse'. Journal of Applied Physiology, 109 (5):1328-1336.   
O. F. McGlynn, J. A. Browne, C. M. Blake and B. A. Murphy (2010) 'Time of day influences clock gene and cytokine response to immune stimulation in equine whole blood. Animal Genetics'. .  
Dr Aine Ni Dhubhain
Farrelly, N., Ni Dhubhain, A., Nieuwenhuis, M (2011) 'Site index of Sitka spruce (Picea sitchensis) in relation to different measures of site quality in Ireland'. CANADIAN JOURNAL OF FOREST RESEARCH-REVUE CANADIENNE DE RECHERCHE FORESTIERE, 41 (2):265-278.  
Carroll, MS, Ni Dhubhain, A and Flint C (2011) 'Back where they once belonged? Local response to afforestation in County Kerry, Ireland'. Sociologia Ruralis: Journal of the European Society For, 51 (1):35-53.  
Professor Maarten Nieuwenhuis
O Olajuyigbe, S., Tobin, B., Gardiner, P. and Nieuwenhuis, M. (2011) 'Stocks and decay dynamics of above- and belowground coarse woody debris in managed Sitka spruce forests in Ireland'. Forest Ecology and Management, 262 (6):1109-1118.  
A Tene, B Tobin, J Dyckmans, D Ray, K Black and M Nieuwenhuis (2011) 'Assessment of Tree Response to Drought: Validation of a Methodology to Identify and Test Proxies for Monitoring Past Environmental Changes in Trees'. Tree Physiology, 31 (3):309-322.  
Niall Farrelly, Aine N? Dhubhain, and Maarten Nieuwenhuis (2011) 'Site index of Sitka spruce (Picea sitchensis) in relation to different measures of site quality in Ireland'. Canadian Journal of Forest Research, 41 (2):265-278.  
Dr Francesco Noci
Palgan, I., Caminiti, I.M., Muñoz, A., Noci, F., Whyte, P., Morgan, D.J., Cronin, D.A., Lyng, J.G. (2011) 'Effectiveness of High Intensity Light Pulses (HILP) treatments for the control of Escherichia coli and Listeria innocua in apple juice, orange juice and milk'. Food Microbiology, 28 (1):14-20.   
Rawson, A.a , Patras, A.b , Tiwari, B.K.c , Noci, F.d , Koutchma, T.e , Brunton, N.f (2011) 'Effect of thermal and non thermal processing technologies on the bioactive content of exotic fruits and their products: Review of recent advances'. Food Research International, 44 (7):1875-1887.   
Muñoz, A., Palgan, I., Noci, F., Morgan, D.J., Cronin, D.A., Whyte, P., Lyng, J.G. (2011) 'Combinations of High Intensity Light Pulses and Thermosonication for the inactivation of Escherichia coli in orange juice'. Food Microbiology, 28 (6):1200-1204.   
Noci, F.a b , Monahan, F.J.b , Moloney, A.P.a (2011) 'The fatty acid profile of muscle and adipose tissue of lambs fed camelina or linseed as oil or seeds'. Animal, 5 (1):134-147.   
Caminiti, I.M., Palgan, I., Noci, F., Muñoz, A., Whyte, P., Cronin, D.A., Morgan, D.J., Lyng, J.G. (2011) 'The effect of pulsed electric fields (PEF) in combination with high intensity light pulses (HILP) on Escherichia coli inactivation and quality attributes in apple juice'. Innovative Food Science and Emerging Technologies, 12 (2):118-123.   
Palgan, I., Caminiti, I.M., Muñoz, A., Noci, F., Whyte, P., Morgan, D.J., Cronin, D.A., Lyng, J.G. (2011) 'Combined effect of selected non-thermal technologies on Escherichia coli and Pichia fermentans inactivation in an apple and cranberry juice blend and on product shelf life'. International Journal of Food Microbiology, 151 (1):1-6.   
Caminiti, IM,Noci, F,Munoz, A,Whyte, P,Morgan, DJ,Cronin, DA,Lyng, JG (2011) 'Impact of selected combinations of non-thermal processing technologies on the quality of an apple and cranberry juice blend'. Food Chemistry, 124 :1387-1392.  
Mr Tom Norton
Norton T., Grant, J., Fallon R., Sun D-W. (2010) 'Improving the representation of thermal boundary conditions of livestock during CFD modelling of the indoor environment'. COMPUTERS AND ELECTRONICS IN AGRICULTURE, 73 (1):17-36.  
Mr Alan O'Doherty
Okumu LA, Fair T, Szekeres-Bartho J, O'Doherty AM, Crowe MA, Roche JF, Lonergan P, Forde N. (2011) 'Endometrial expression of progesterone induced blocking factor and galectins-1, -3, -9 and -3 binding protein in the luteal phase and early pregnancy in cattle'. Physiological genomics, 43 :903-910.  
O'Doherty AM, Rutledge CE, Sato S, Thakur A, Lees-Murdock DJ, Hata K, Walsh CP. (2011) 'DNA methylation plays an important role in promoter choice and protein production at the mouse Dnmt3L locus'. Developmental Biology .  
Professor John O'Doherty
Leonard, S.G., Sweeney, T., Bahar, B., Lynch, B.P., O'Doherty, J.V. (2011) 'Effect of dietary seaweed extracts and fish oil supplementation in sows on performance, intestinal microflora, intestinal morphology, volatile fatty acid concentrations and immune status of weaned pigs'. British Journal of Nutrition, 105 (4):549-560.   
Varley, P.F., Flynn, B., Callan, J.J., O'Doherty, J.V. (2011) 'Effect of crude protein and phosphorus level on growth performance, bone mineralisation and phosphorus, calcium and nitrogen utilisation in grower-finisher pigs'. Archives of Animal Nutrition, 65 (2):134-147.   
Ryan, W.F., Lynch, P.B., O'Doherty, J.V. (2011) 'Effect of dietary phosphorus on the development of bone mineral density of pigs assessed using dual energy X-ray absorptiometry'. Livestock Science, 137 (1-3):101-107.   
Varley, P.F., Sweeney, T., Ryan, M.T., O'Doherty, J.V. (2011) 'The effect of phosphorus restriction during the weaner-grower phase on compensatory growth, serum osteocalcin and bone mineralization in gilts'. Livestock Science, 135 (2-3):282-288.   
McDonnell P, O¿Shea C, Figat S, Callan JJ and O¿Doherty JV. (2011) 'The response of growth performance, nitrogen and phosphorus excretion of growing-finishing pigs to diets containing incremental levels of maize dried distiller¿s grains with soluble'. Animal Feed Science and Technology, 169 (1-2):104-112.  
Alam T, Bahar B, Waters SM, McGee M, O'Doherty JV, Sweeney T (2011) 'Functional characterisation of the bovine neuropeptide Y gene promoter and evaluation of the transcriptional activities of promoter haplotypes'. Molecular biology reports, PMID:21562764 .  
Pauly, C., Spring, P., Gahan, D., Odoherty, J.V. (2011) 'The effect of cereal type and enzyme supplementation on carcass characteristics, volatile fatty acids and intestinal microflora and boar taint in entire male pigs'. Animal, 5 (3):378-386.   
O'Shea CJ, Sweeney T, Lynch MB, Callan JJ, O'Doherty JV (2011) 'Modification of selected bacteria and markers of protein fermentation in the distal gastrointestinal tract of pigs upon consumption of chitosan is accompanied by heightened manure odor emissions'. Journal of animal science, 89 (5):1366-1375.  
Smith, A.G., O'Doherty, J.V., Reilly, P., Ryan, M.T., Bahar, B., Sweeney, T. (2011) 'The effects of laminarin derived from Laminaria digitata on measurements of gut health: selected bacterial populations, intestinal fermentation, mucin gene expression and cytokine gene expression in the pig'. The British journal of nutrition, 105 (5):669-677.   
Hager, AS, Ryan, L.A.M., Schwab, C, Ganzle, M, O'Doherty, J.V and Arendt, E.K. (2011) 'Influence of the soluble fibres inulin and oat B-glucan on quality of dough and bread'. European Food Research and Technology, 232 (3):405-413.   
O'Shea, C.J., Sweeney, T., Lynch, M.B., Gahan, D.A., Flynn, B.A., O'Doherty, J.V. (2011) 'The effect of introducing purified Beta-glucans to a wheat-based diet on total tract digestibility and gaseous manure emissions from pigs as compared with consumption of a beta-glucan-rich, barley-based diet'. Animal Feed Science and Technology, 165 (1-2):95-104.   
Sweeney, T., Dillon, S., Fanning, J., Egan, J., O'Shea, C.J., Figat, S., Gutierrez, J.J.M., Mannion, C., Leonard, F., O'Doherty, J.V. (2011) 'Evaluation of seaweed-derived polysaccharides on indices of gastrointestinal fermentation and selected populations of microbiota in newly weaned pigs challenged with Salmonella Typhimurium'. Animal Feed Science and Technology, 165 (1-2):85-94.   
Ryan, W.F., Lynch, P.B., O'Doherty, J.V. (2011) 'Compensatory effect of dietary phosphorus on performance of growing pigs and development of bone mineral density assessed using dual energy X-ray absorptiometry'. Livestock Science, 138 (1-3):89-95.   
Varley, P.F., Flynn, B., Callan, J.J., O'Doherty, J.V. (2011) 'Effect of phytase level in a low phosphorus diet on performance and bone development in weaner pigs and the subsequent effect on finisher pig bone development'. Livestock Science, 138 (1-3):152-158.   
Meade, G., Pierce, K., O'Doherty, J.V., Mueller, C., Lanigan, G. and Mc Cabe, T. (2011) 'Ammonia and nitrous oxide emissions following land application of high and low nitrogen pig manures to winter wheat at three growth stages'. Agriculture, Ecosystems and Environment, 140 (1-2):208-217.  
Murphy, D.P., O'Doherty, J.V., Boland, T.M., O'Shea, C.J., Callan, J.J., Pierce, K.M., Lynch, M.B. (2011) 'The effect of benzoic acid concentration on nitrogen metabolism, manure ammonia and odour emissions in finishing pigs'. Animal Feed Science and Technology, 163 (2-4):194-199.   
Varley, P.F., Callan, J.J., O'Doherty, J.V. (2011) 'Effect of dietary phosphorus and calcium level and phytase addition on performance, bone parameters, apparent nutrient digestibility, mineral and nitrogen utilization of weaner pigs and the subsequent effect on finisher pig bone parameters'. Animal Feed Science and Technology, 165 (3-4):201-209.   
Varley PF, Sweeney T, Callan JJ, Flynn B, McCarney C, O'Doherty JV (2010) 'Effect of phosphorus level and inulin inclusion on phosphorus calcium and nitrogen utilization intestinal microflora and bone development'. Journal of the Science of Food and Agriculture, 90 :2447-2454.  
O'Shea CJ, Lynch MB, Sweeney T, Gahan DA, Callan JJ, O'Doherty JV (2010) 'Comparison of a wheat-based diet supplemented with purified {beta}-glucans, with an oat-based diet on nutrient digestibility, nitrogen utilization, distal gastrointestinal composition and manure odor and ammonia emissions from finishing pigs'. Journal of animal science, 89 (2):438-447.  
Leonard SG, Sweeney T, Bahar B, Lynch BP, O'Doherty JV (2010) 'Effect of maternal fish oil and seaweed extract supplementation on colostrum and milk composition, humoral immune response, and performance of suckled piglets'. Journal of animal science, 88 (9):2988-2997.  
Dr Conor O'Reilly
Schmal, J., Jacobs, D.F. and O'Reilly, C. (2011) 'Nitrogen budgeting and quality of exponentially fertilized Quercus robur seedlings'. European Journal Forest Research, 130 :557-567.  
Doody, C. and O'Reilly, C. (2011) 'Effect of long-phase stratification treatments on seed germination in ash'. Annals of Forest Science, 68 :139-147.  
Harper, R.C. O'Reilly, C. and Perks, M. (2010) 'Rapidly detecting the effects of warm storage stress on Douglas fir seedlings'. Plant Biosystems, 144 :769-777.  
Professor Dolores O'Riordan
Arimi, J. M., Duggan, E., O'Sullivan, M., Lyng, J. G., O'Riordan, E. D. (2011) 'Effect of protein starch ratio on microwave expansion of imitationcheese based product'. Food Hydrocolloids, 25 (5):1069-1076.  
Halpin RM, Brady DB, O'Riordan ED, O'Riordan, D. (2011) 'The effect of untreated and enzyme treated commercial dairy powders on the growth and adhesion of Streptococcus mutans'. Lwt-Food Science and Technology, 44 (6):1525-1532.  
El-Bakry, M., Duggan, E., O'Riordan, E. D., O'Sullivan, M. (2011) 'Reducing salt in imitation cheese; Effects on manufacture and functional properties'. Food Research International, 100 (4):1650-1655.  
El-Bakry, M., Duggan, E., O'Riordan, E. D., O'Sullivan, M. (2011) 'Casein hydration and fat emulsificationduring manufacture of i itation cheese and effects of emulsifying salts reduction'. Journal of Food Engineering, 103 (2):179-187.  
Harbourne, Niamh and Jacquier, Jean Christophe and O'Riordan, Dolores (2011) 'Effects of addition of phenolic compounds on the acid gelation of milk'. International Dairy Journal, 21 (3):185-191.  
El-Bakry, M., Duggan, E., O'Riordan, E. D., O'Sullivan, M. (2011) 'Effect of chelating salt type on casein hydration and fat emulsification during manufacture and post-manufacture functionality of imitation cheese'. J Food Eng, 2 (102):145--153.   
Marete, E.N., Jacquier, J.-C., O'Riordan, D (2011) 'Feverfew as a source of bioactives for functional foods: Storage stability in model beverages'. Journal of Functional Foods, 3 (1):38-43.  
El-Bakry, M., Duggan, E., O'Riordan, E. D., O'Sullivan, M. (2011) 'Effect of cation, sodium or potassium, on casein hydration and fat emulsification during imitation cheese manufacture and post manufacture functionality'. LWT -- Food Science and Technology, 44 (10):2012-2018.  
Dr Sharon O'Rourke
O'Rourke, S.M., and Holden, N.H. (2011) 'Optical sensing and chemometric analysis of soil organic carbon - a cost effective alternative to conventional laboratory methods?'. Soil Use and Management, 27 (2):143-155.  
O'Rourke, S.M., Foy, R.H., Watson, C.P., Gordon, A. (2010) 'Effect of varying the phosphorus content of dairy cow diets on losses of phosphorus in overland flow following surface applications of manure'. Journal of Environmental Quality, 39 (6):2138-2146.  
Mr Cormac O'Shea
Murphy, D.P., O'Doherty, J.V., Boland, T.M., O'Shea, C.J., Callan, J.J., Pierce, K.M., Lynch, M.B. (2011) 'The effect of benzoic acid concentration on nitrogen metabolism, manure ammonia and odour emissions in finishing pigs'. Animal Feed Science and Technology, 163 :194-199.  
O'Shea, C.J., Lynch, M.B., Sweeney, T., Gahan, D.A., Callan, J.J., O'Doherty, J.V. (2011) 'Comparison of a wheat-based diet supplemented with purified β-glucans, with an oat-based diet on nutrient digestibility, nitrogen utilization, distal gastrointestinal tract composition, and manure odor and ammonia emissions from finishing pigs'. Journal of Animal Science, 89 :438-447.  
O'Shea, C.J., Gahan, D.A., Lynch, M.B., Callan, J.J., Flynn, B., O'Doherty, J.V. (2010) 'Effect of supplementation of exogenous beta-glucans and enzymes on nutrient digestibility, manure odour and ammonia emissions from finisher boars'. Livestock Science, 134 :190-193.   
O'Shea, C.J., Lynch, M.B., Callan, J.J., O'Doherty, J.V. (2010) 'Dietary supplementation with chitosan at high and low crude protein concentrations promotes Enterobacteriaceae in the caecum and colon and increases manure odour emissions from finisher boars'. Livestock Science, 134 :198-201.  
Mr Mick O'Sullivan
Caprioli, I., O'Sullivan, M. and Monahan, F.J. (2011) 'Interference of sodium caseinate in the TBARS assay'. Food Chemistry, 124 :1284-1287.   
El-Bakry, M., Duggan, E., O'Riordan, E. D., O'Sullivan, M. (2011) 'Effect of chelating salt type on casein hydration and fat emulsification during manufacture and post-manufacture functionality of imitation cheese'. J Food Eng, 2 (102):145--153.   
Halpin, R.M. Brady. D.B O¿Riordan, E.D. & O'Sullivan, M. (2011) 'Determination of the effect of dairy powders on adherence of Streptococcus sobrinus and Streptococcus salivarius to hydroxylapatite and growth of these bacteria'. Journal of Functional Foods, 3 :280-289.   
Halpin, R.M. Brady. D.B O¿Riordan, E.D. & O¿Sullivan, M. (2011) 'The Effect of Untreated and Enzyme-Treated Commercial Dairy Powders on the Growth and Adhesion of Streptococcus mutans'. Lwt-Food Science and Technology, 44 :1525-1532.  
El-Bakry, M., Duggan, E., O¿Riordan, E.D. and O'Sullivan, M. (2011) 'Effect of cation, sodium or potassium, on casein hydration and fat emulsification during imitation cheese manufacture'. Lwt-Food Science and Technology, 44 :2012-2018.  
El-Bakry, M., Beninati, F., Duggan, E., O¿Riordan, E.D. and O¿Sullivan, M (2011) 'Reducing salt in imitation cheese: effects on manufacture and functional properties'. Food Research International, 44 :589-596.  
Dr Karina Pierce
S. J. Whelan, F. J. Mulligan, B. Flynn, C. McCarney and K. M. Pierce (2011) 'Effect of forage source and a supplementary methionine hydroxyl analogue on nitrogen balance in lactating dairy cows offered a low crude protein diet'. Journal of Dairy Science, 94 :5080-5089.  
R. Prendiville, K.M. Pierce, L. Delaby and F. Buckley (2011) 'Animal performance and production efficiencies of Holstein-Friesian, Jersey and Jersey×Holstein-Friesian cows throughout lactation'. Livestock Science, 138 :25-33.  
B. McCarthy, L. Delaby, K.M. Pierce, F. Journot and B. Horan (2011) 'Meta-analysis of the impact of stocking rate on the productivity of pasture-based milk production systems'. Animal, 5:5 :784-794.  
Meade, G., Pierce, K., O'Doherty, J.V., Mueller, C., Lanigan, G. and Mc Cabe, T. (2011) 'Ammonia and nitrous oxide emissions following land application of high and low nitrogen pig manures to winter wheat at three growth stages'. Agriculture, Ecosystems and Environment, 140 (1-2):208-217.  
Murphy, D.P., O'Doherty, J.V., Boland, T.M., O'Shea, C.J., Callan, J.J., Pierce, K.M., Lynch, M.B. (2011) 'The effect of benzoic acid concentration on nitrogen metabolism, manure ammonia and odour emissions in finishing pigs'. Animal Feed Science and Technology, 163 (2-4):194-199.   
J. Coleman, K. M. Pierce, D. P. Berry, A. Brennan and B. Horan (2010) 'Dry matter intake and feed efficiency profiles of 3 genotypes of Holstein-Friesian within pasture-based systems of milk production'. Journal of Dairy Science, 92 (2):4318-4331.  
J. Coleman, K.M. Pierce, D.P. Berry, A. Brennan, B. Horan (2010) 'Increasing milk solids production across lactation through genetic selection and intensive pasture-based feed system'. Journal of Dairy Science, 93 (9):4302-4317.  
Dr Gordon Purvis
Anderson, A., McCormack, S., Helden, A., Sheridan, H., Kinsella, A. & Purvis, G. (2011) 'The potential of parasitoid Hymenoptera as bioindicators of arthropod diversity in agricultural grasslands'. Journal of Applied Ecology, 48 :382-390.  
McMahon, B.J., Helden, A., Anderson, A., Sheridan, H., Kinsella, A., Purvis, G., (2010) 'Interactions between livestock systems and biodiversity in South-East Ireland'. Agriculture, Ecosystems and Environment, (139):232-238.  
Dr Olaf Schmidt
Putz B, Drapela T, Wanek W, Schmidt O, Frank T and Zaller JG (2011) 'A simple method for in situ-labelling with 15N and 13C of grassland plant species by foliar brushing'. Methods in Ecology and Evolution, 2 (3):326-332.   
Hoekstra NJ, Lalor S, Richards K, O¿Hea N, Dungait J, Schulte RPO and Schmidt O (2011) 'The fate of organic and inorganic slurry N in herbage and soil during two years following application'. Plant and Soil, 342 (1-2):83-96.   
Osorio, M.T., Moloney, A.P., Schmidt, O., Monahan, F.J. (2011) 'Multielement isotope analysis of bovine muscle for determination of international geographical origin of meat'. Journal of Agricultural and Food Chemistry, 59 (7):3285-3294.   
Osorio, M.T., Moloney, A.P., Schmidt, O., Monahan, F.J. (2011) 'Beef authentication and retrospective dietary verification using stable isotope ratio analysis of bovine muscle and tail hair'. Journal of Agricultural and Food Chemistry, 59 (7):3295-3305.   
Rohrle FT, Moloney AP, Black A, Osorio MT, Sweeney T, Schmidt O and Monahan FJ (2011) 'alpha-Tocopherol stereoisomers in beef as an indicator of vitamin E supplementation in cattle diets'. Food Chemistry, 124 (3):935-940.   
Harrison SM, Schmidt O, Moloney AP, Kelly SD, Rossmann A, Schellenberg A, Camin F, Perini M, Hoogewerff J and Monahan FJ (2011) 'Tissue turnover in ovine muscle and lipids as recorded by multiple (H, C, O, S) stable isotope ratios'. Food Chemistry, 124 (1):291-297.   
Artuso N, Kennedy TF, Connery J, Grant J and Schmidt O (2011) 'Effects of biosolids at varying rates on earthworms (Eisenia fetida) and springtails (Folsomia candida)'. Applied and Environmental Soil Science, 2011 (Article ID 519485):1-10.   
Dr David Stead
Stead, D. R. (2011) 'Economic change in south-west Ireland, 1960-2009'. Rural History, 22 (1):115-146.  
Dr Tharmala Tharmalingam
Telford, JE, Doherty, MA, Tharmalingam, T, and Rudd, PM. (2011) 'Discovering New Clinical Markers in the field of Glycomics'. Biochemical Society Transactions, 39 :327-330.  
Rodriguez, J, Spearman, M, Tharmalingam, T, Sunley K, Lodewyks C, Huzel N, and Butler, M (2010) 'High productivity of human recombinant beta-interferon from a low-temperature perfusion culture'. Journal of Biotechnology, 150 (4):509-518.  
Dr Michael Wallace
O'Brien, D., Shalloo, L., Buckley, F., Horan, B., Grainger, C. and Wallace, M. (2011) 'The Effect of Methodology on Estimates of Greenhouse Gas Emissions from Grass-Based Dairy Systems'. Agriculture, Ecosystems and Environment, 141 (1/2):39-48.  
Clancy, D., Breen, J., Moran, B., Thorne, F. and Wallace, M. (2011) 'Examining the Socio-Economic Factors Affecting Willingness to Adopt Bioenergy Crops'. Journal of International Farm Management, 5 :1-16.   
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Other Journals
Professor Maarten Nieuwenhuis
Tobin, B., Tene, A., Dyckmans, J., Ray, D., Black, K., and Nieuwenhuis, M. (2011) 'Identifying and examining tree response to drought' Irish Timber and Forestry, 20 (2):24-27.  
Nieuwenhuis, M. (2011) 'UCD Forestry Excursion to the Black Forest, Germany (part 2)' Irish Timber and Forestry, 20 (1):22-25.  
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Conference Publications
Dr Lorraine Brennan
Monahan FJ, Moloney AP, Osorio, MT, Röhrle F, Schmidt O and Brennan L (2011) Authentication of grass-fed beef using bovine muscle, hair or urine Food Integrity and Traceability Conference, Belfast, 33  
Dr Thomas Cummins
Caplice, Martina Brigid, Bryan S. Griffiths, Olaf Schmidt, Thomas Cummins (2011) Biological resilience in Irish arable soils under different tillage practices Agricultural Research Forum 2011  
Professor Alexander Evans
K Pluta, JA Irwin, ME Gallagher, ACO Evans, SD Carrington (2011) Activity of Glycosidases in Bovine Cervical Mucus Changes During Oestrous Cycle 44th Annual Meeting of the Society for the Study of Reproduction, Portland, Oregon, 349  
S Walsh JP Mehta, JA Browne, N Forde, PA McGettigan, M Mihm, B Loftus, MA Crowe, ACO Evans (2011) Differences in gene expression in preovulatory follicles after the LH surge in dairy heifers versus lactating cows 44th Annual Meeting of the Society for the Study of Reproduction, Portland, Oregon, 631  
GB Duffy, P McGettigan, JA Browne, N Mansouri-Attia, G Charpigny, O Sandra, BJ Loftus, J Roche, M Crowe, P Lonergan, ACO Evans (2011) Next generation sequencing identifies novel interferon stimulated genes in the uterine endometrium of cattle during early pregnancy 44th Annual Meeting of the Society for the Study of Reproduction, Portland, Oregon, 370  
F Mossa, SW Walsh, TB Hildebrandt, DA Kenny, P Lonergan, GW Smith, JJ Ireland, ACO Evans (2011) Evidence that undernutrition during the first trimester of pregnancy influences development and function of the cardiovascular system in female offspring in cattle 44th Annual Meeting of the Society for the Study of Reproduction, Portland, Oregon, 281  
MP Mullen, ACO Evans, G Elia, M Hilliard, N Forde, MH Parr, MG Diskin, MA Crowe (2011) Temporal changes in the proteome of the uterine histotroph in cattle Meeting of the American Animal Science Association and the American Dairy Science Association, New Orleans, USA,  
F Mossa, SW Walsh, DA Kenny, P Lonergan, GW Smith, JJ Ireland, ACO Evans (2011) Impact of undernutrition on circulating testosterone and cortisol concentrations during pregnancy of cattle GEMINI Group III Workshop, Batsheva de Rothshild Seminar on: Periconceptional developmental programming, Jerusalem, Israel, 14  
K Pluta, P McGettigan, J Browne, C Reid, AC Evans, SD Carrington (2011) Mucin biosynthesis in the bovine cervix 11th International Workshop on Carcinoma-associated Mucins, Cambridge, UK,  
IA Hutchinson, P Lonergan, ACO Evans, RJ Dewhurst, ST Butler (2011) The effect of dietary polyunsaturated fatty acids on follicle development, corpus luteum volume and circulating progesterone in lactating dairy cows Agriculture Research Forum, Tullamore, Ireland, 157  
SB Cummins, P Lonergan, ACO Evans, ST Butler (2011) The effect of genetic merit for fertility traits on body condition score, milk production, and hormonal and metabolic profiles Agriculture Research Forum, Tullamore, Ireland, 160  
L Richardson, JP Hanrahan, S Fair, SD Carrington, P Lonergan, ACO Evans (2011) The effect of ewe breed on sialic acid content of the cervix Agriculture Research Forum, Tullamore, Ireland,  
Dublin, Ireland, 5 to 7 January 2011. Poster P142 (2011) Global characterisation of proteins in bovine uterine histotroph Agriculture Research Forum, Tullamore, Ireland, 155  
D Matthews, DG Morris, C Creevey, DA Kenny, SM Waters, MS McCabe, ACO Evans, DG Diskin (2011) Effect of short term dietary restriction on gene expression in the bovine hypothalamus using next generation sequencing Agriculture Research Forum, Tullamore, Ireland, 156  
K Pluta, M Gallagher, J Browne, P McGettigan, M Crowe, J Roche, A Evans, S Carrington (2011) Changes in galectin 3 in the cervix and it secretions about the time of oestrus in heifers Fertility 2011. A joint meeting of UK and Irish Fertility Organizations (ACE, BFS, SRF, ICE, IFS), Dublin, Ireland, P142  
K Pluta, C Dolphin, T Tharmalingam, ACO Evans, SD Carrington (2010) Biochemical and topographical changes in glycoconjugates of the cervical epithelium associated with the onset of oestrus in cattle 8th International Ruminant Reproduction Symposium,  
EJ Williams, RA Law, HS Gilmore, F Carter, S Cody, CP Ferris, CS Mayne, P Lonergan, JF Roche, MG Diskin, FJ Young, MA Crowe and ACO Evans (2010) Uterine infection is associated with decreased mRNA for IGF-1 in liver and increased negative energy balance in post partum cows 8th International Ruminant Reproduction Symposium,  
BA Murphy, C Blake, A-M Martin, N Forde, JA Browne, ACO Evans (2010) Temporal patterns of circadian clock gene expression differ between stroma and dominant follicles in periovulatory ovine ovaries 8th International Ruminant Reproduction Symposium,  
F Mossa, ST Butler, DP Berry, F Jimenez-Krassel, P Lonergan, GW Smith, JJ Ireland, ACO Evans (2010) Number of follicles during follicular waves is positively associated with fertility in dairy cows 8th International Ruminant Reproduction Symposium,  
SW Walsh, EJ Williams, PA McGettigan, JP Mehta, JA Browne, ACO Evans (2010) The effect of postpartum uterine infection on subsequent preovulatory follicle gene expression during the breeding season in postpartum cows 8th International Ruminant Reproduction Symposium,  
Dr Alan Fahey
A.M. Doyle, R.D. Evans, and A.G. Fahey (2011) Analysis of twinning, abortion and calf mortality in Irish Holstein and Friesian populations American Dairy Science Association / American Society for Animal Sciences, New Orleans, LA, USA, 88 - 89  
A.M. Doyle, R.D. Evans, and A.G. Fahey (2011) Heritability and repeatability estimates for twinning rate in the Irish dairy and beef cattle American Dairy Science Association / American Society for Animal Sciences, 471 - 471  
Reddy, E., Mansouri-Attia, N, Hue, N., Coady, M., Fitzpatrick, E., Fahey, A., and Lonergan P. (2011) Characterisation of non-classical MHC-I gene expression in bovine peri-implantation conceptii European Sociey of Reproductive Immunology,  
Fahey, A.G., P. Duffy, and S. Fair (2011) The effect of teasing rams with a ewe stimulus prior to semen collection American Dairy Science / American Society for Animal Sciences, New Orleans, LA, USA, 88 - 88  
Kiernan, M., S. Morscher, A.G. Fahey, and S. Fair (2011) The effect of polyunsaturated fatty acids on bull sperm motility, viability and the ability to penetrate artificial mucus Agriculture Research Forum, Tullamore, Co. Offaly, Ireland, 159 - 159  
Fair, S., P. Duffy, A.M. Doyle, M. Kiernan, M.A. Crowe, and A.G. Fahey (2011) The effect of laparoscopic insemination of cooled semen on pregnancy rate in sheep Agriculture Research Forum, Tullamore, Co. Offaly, Ireland, 165 - 165  
Meredith, B., J.F. Kearney, D. Bradley, E. Finlay, D.J. Lynn, A.G. Fahey, and D.P. Berry (2011) Genome-wide associations for milk production and somatic cell count in Irish Holstein-Friesian cattle Agriculture Research Forum,  
N. Gould, W. Minchin, D.A. Kenny, Fahey, A.G., and M. McGee (2011) Effect of initial grazing date in spring, via restricted or full time grazing, on intake and performance of primiparous beef suckler cows and their progeny Agriculture Research Forum,  
Fahey, A.G., P. Duffy, and S. Fair (2011) The effect of exposing rams to a ewe prior to semen collection on ram libido and semen quality Agricluture Research Forum, Tullamore, Co. Offaly, Ireland, 164 - 164  
Dr Trudee Fair
Aparicio, I. M. Garcia-Herreros, M. O'Shea, L. C. Hensey, C. Lonergan, P. Fair, T. (2011) Role of Progestrone and it's receptors on developmental competence of Oocytes in Cattle Reproduction and Fertility Development, Reproduction, Fertility and Development, 23, 227 - 227  
N Mansouri-Attia, LJ Oliveira, F Carter, N Forde, P Lonergan1, T Fair (2011) Expression of RSAD2 and TGF-β in bovine peripheral blood mononuclear cells during pregnancy: identification of potential biomarkers to determine pregnancy status International Embryo Transfer Society,  
Mansouri-Attia N, Oliveira LJ, Carter F, Forde N, Lonergan P, Fair T (2010) Synergistic actions of the interferon-tau (IFN-tau) on endometrium and peripheral blood mononuclear cells (PBMC) are modulating immune factors during early pregnancy in cattle 8th European Congress on Reproductive Immunology,  
Dr John Fry
Fry, John; Peter Carvill, Berna Grist and Tamara Hochstasser (2011) Developing IBIA: Legal and Administrative Issues IAIA11, Impact Assessment for responsible development from infrastructure and industry: the 31st Annual meeting of the International Association for Impact Assessment, Puebla, Mexico 29 May - 4 June 2011  
González, Ainhoa; John Fry, Tamara Hochstrasser, Paul Scott, Peter Carvill, and Mike Jones (2011) A Methodological Approach to Integrating Strategic Environmental Assessment and Biodiversity Impact Assessment 'SEA Implementation and Practice: Making an Impact?' International Association for Impact Assessment special conference, Prague, 21-23 September 2011,  
Fry, John and Fintan O'Connell (2011) Developing IBIA: Review of previous AAs in Ireland IAIA11, Impact Assessment for responsible development from infrastructure and industry: the 31st Annual meeting of the International Association for Impact Assessment, Puebla, Mexico 29 May - 4 June 2011  
Fry, John; Tamara Hochstrasser, Ainhoa González, Paul Scott, Peter Carvill, and Harutyun Shahumyan (2011) Developing IBIA: Process and content? IAIA11, Impact Assessment for responsible development from infrastructure and industry: the 31st Annual meeting of the International Association for Impact Assessment, Puebla, Mexico 29 May - 4 June 2011  
John Fry and Paul Scott (2011) Developing IBIA: A Standardised AA Review Package IAIA11, Impact Assessment for responsible development from infrastructure and industry: the 31st Annual meeting of the International Association for Impact Assessment, Puebla, Mexico 29 May - 4 June 2011  
González, Ainhoa; John Fry, Tamara Hochstrasser, and Harutyun Shahumyan (2011) Developing IBIA: Review of GIS-compatible methods IAIA11, Impact Assessment for responsible development from infrastructure and industry: the 31st Annual meeting of the International Association for Impact Assessment, Puebla, Mexico 29 May - 4 June 2011  
Fry, John; Tamara Hochstrasser, Ainhoa González, Jackie Whelan, Paul Scott, Peter Carvill, and Mike Jones (2011) General Biodiversity Impact Assessment in Strategic Environmental Assessment: Addressing a neglected area 'SEA Implementation and Practice: Making an Impact?' International Association for Impact Assessment special conference, Prague, 21-23 September 2011,  
González, Ainhoa and John Fry (2011) Developing IBIA: Data limitations on GIS support IAIA11, Impact Assessment for responsible development from infrastructure and industry: the 31st Annual meeting of the International Association for Impact Assessment, Puebla, Mexico 29 May - 4 June 2011  
Dr Margherita Gioria
Gioria, M (2010) Modelling biodiversity patterns in ponds 2010 British Ecological Society Annual Meeting,  
Gioria (2010) Use of cross-taxon congruence analysis to identify potential surrogate taxa for freshwater biodiversity 40th GfÖ Ecological Society of Germany, Austria and Switzerland Annual Meeting 2010,  
Dr James Kinsella
Jim Kinsella and Deirdre O'Connor (2011) Changing Agriculture and Rural Development - The case of Ireland SANPAD Rural Development Theme Conference - Beijing, Feb 28th to March 2nd 2011,  
McGloin, A., O'Connor, D. and Kinsella, J. (2011) SOCIAL FARMING IN IRELAND: BRIDGING THE GAP - FROM A COMMUNITY OF PRACTICE TO A BOUNDARY ORGANISATION XXIV European Congress for Rural Sociology, ESRS 2011,  
Jim Kinsella (2010) Semi-subsistence Farming: Concepts and Key Issues ¿ The Case of Smallholders in Ireland EU ENRD Conference on Semi-subsistence farming in the EU: Current situation and future prospects, Sibiu Romania,   
Professor Patrick Lonergan
Aparicio, I. M. Garcia-Herreros, M. O'Shea, L. C. Hensey, C. Lonergan, P. Fair, T. (2011) Role of Progestrone and it's receptors on developmental competence of Oocytes in Cattle Reproduction and Fertility Development, Reproduction, Fertility and Development, 23, 227 - 227  
Mansouri-Attia N, Oliveira LJ, Carter F, Forde N, Lonergan P, Fair T (2010) Synergistic actions of the interferon-tau (IFN-tau) on endometrium and peripheral blood mononuclear cells (PBMC) are modulating immune factors during early pregnancy in cattle 8th European Congress on Reproductive Immunology,  
Dr Bridget Lynch
P.J. O¿Connor, D. Hennessy, M. O¿Donovan and M.B. Lynch (2011) The effect of dicyandiamide (DCD) application in late summer and autumn on annual herbage production on two soil types Proceeding of the Agricultural Research Forum,  
P.J. O¿Connor, D. Hennessy, M. O¿Donovan, M.B. Lynch (2011) The effect of the nitrification inhibitor dicyandiamide (DCD) applied in late summer, autumn and winter on soil nitrogen ammonium and total oxidiseable nitrogen Proceedings of the British Grassland Society meeting,  
Dr James Lyng
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P. (2011) (i) Combination of ultrasonication or thermosonication and ultraviolet light for the decontamination of raw chicken 16th International Workshop on Campylobacter, Helicobacter and Related Organisms, Vancouver, Canada,  
Whyte, P., Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A., Fanning, S. (2011) Reducing Campylobacter in plant using novel physical interventions FIRM Relay Dissemination conference ¿Strategies to control Campylobacter in poultry,  
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P. (2011) (ii) Effect of a commercially available water acidification product (PWT) on the survival of Campylobacter spp. in water and broiler cecal contents 16th International Workshop on Campylobacter, Helicobacter and Related Organisms, Vancouver, Canada,  
Ms Aideen McGloin
McGloin, A., O'Connor, D. and Kinsella, J. (2011) SOCIAL FARMING IN IRELAND: BRIDGING THE GAP - FROM A COMMUNITY OF PRACTICE TO A BOUNDARY ORGANISATION XXIV European Congress for Rural Sociology, ESRS 2011,  
Dr Barry John McMahon
McMahon, B.J., Anderson, A., Carnus, T., Helden, A., Sheridan, H., & Purvis, G (2011) How does animal stocking rate influence agricultural grassland biodiversity when measured at different scales? Conserving Farmland Biodiversity: Lessons learned & future prospects. Teagasc Biodiversity Conference, 78 - 79  
Buckley, K., O¿Gorman, C., Comerford, P., Swan, V., Carnus, T., Kavanagh, B. & McMahon, B.J. (2011) The role of habitat creation in the recovery of the Irish grey partridge Perdix perdix Conserving Farmland Biodiversity: lessons learned & future prospects, 42 - 43  
Carnus, T., Anderson, A., Breen, J., McMahon, B. J., Santorum, V., Sheridan, H. & Purvis, G. (2011) Probability of pollinator occurrence increases with duration of AES participation and floral diversity Conserving Farmland Biodiversity: Lessons learned & future prospects, Teagasc Biodiversity Conference, Ferrycarrig Hotel, Wexford, 52 - 53  
Sheridan, H., Keogh, B., Anderson, A., Carnus, T., McMahon, B., Green, S. & Purvis, G. (2011) Habitats in the irish farmed landscape Conserving Farmland Biodiversity: Lessons learned & future prospects. Teagasc Biodiversity Conference, 32 - 33  
Professor Frank Monahan
Harrison S, Schmidt O, Monahan FJ, Bahar B and Moloney AP (2011) Using animal diet switch experiments to improve meat traceability Food Integrity and Traceability Conference, Belfast, 37  
Luciano G, Moloney AP, Priolo A, Röhrle FT, Vasta V, Biondi L, L?pez-Andrés P, Grasso S and Monahan FJ. (2011) The balance between vitamin E and highly peroxidizable fatty acids in muscle and the oxidative stability of beef from cattle grown on forage- or concentrate-based rations 57th International Congress of Meat Science and Technology, Ghent, Belgium,  
Contini C, Katsikogianni MG, O¿NeillFT, O¿Sullivan M, Dowling DP and Monahan FJ (2011) Development of active packaging containing natural antioxidants 11th International Congress on Engineering and Food, Athens, Greece, 1001 - 1002  
Monahan FJ, Moloney AP, Osorio, MT, Röhrle F, Schmidt O and Brennan L (2011) Authentication of grass-fed beef using bovine muscle, hair or urine Food Integrity and Traceability Conference, Belfast, 33  
Dr Barbara Murphy
Murphy, BA; McGlynn, OF; Kharazian, F; Browne, JA. (2011) The influence of exercise on entrainment of skeletal muscle transcription in the horse Equine Science Society Meeting,  
Murphy, BA; Barrett, T; Schlueter, B. (2011) Development of Equine Assisted Therapy and Learning as an Elective Module within an Irish Equine Curriculum Equine Science Society Meeting,  
Murphy, BA (2011) Equine Assisted Therapy and Learning at Third Level? 2011 National Association of Equine Affiliated Academics Conference,  
Murphy BA et al (2010) The effect of sampling time on physiological measurements of horses during a standardised treadmill exercise test 8th International Conference on Equine Exercise Physiology,  
Mr Alan O'Doherty
Alan O¿Doherty, Satoko Matoba, Pat Lonergan & Trudee Fair (Platform Presentation) (2011) In vitro manipulations of bovine oocytes and embryos are associated with aberrant methylation at maternally imprinted loci The 44th Annual Meeting of the Society for the Study of Reproduction,  
Alan O'Doherty (2010) (attendance only) Epigenetics Europe, Select Biosciences. The Burlington Hotel Dublin, Ireland,  
Dr Conor O'Reilly
Cabral-Harper, R. Black, K. and O¿Reilly, C. (2011) Tools for the rapid assessment of bare-root seedling quality IUFRO Conference, Restoring Forests ¿ Advances in Techniques and Theory,  
Professor Dolores O'Riordan
G. O'Neill, J.C. Jacquier, M. O'Sullivan, E.D. O'Riordan (2011) (2011) Encapsulation of amino acids and peptides in cold set whey protein microspheres 2011 EFFoST Annual Meeting Berlin, , 09-NOV-11 - 11-NOV-11,  
McKernan, A, Ellis, A, Jacquier, JC, O'Sullivan, M and O'Riordan, ED. (2010) Microencapsulation of Feed Enzymes for Increased Thermal Stability 2010 EFFoST Annual Meeting, Dublin,  
Sherry, F, A, Ellis, A, Jacquier, JC, O'Sullivan, M, O'Riordan, ED. and Fanning, S. (2010) Effect of prebiotic strains on pathogens in companion animals EFFoST Annual Meeting 2010, Dublin,  
A. Fox, A. Ellis, E. D. O'Riordan, M. O'Sullivan, J.C. Jacquier (2010) Copper encapsulation for trace mineral fortification of food 2011 EFFoST Annual Meeting 10/11,  
Dr Sharon O'Rourke
O'Rourke, S.M. and Holden, N.M. (2011) The potential of visible-near infrared hyperspectral imaging for determining soil organic matter and carbon fractions in forest top soils European Geosciences Union General Assembly 2011, 3 - 8th April, Vienna, Austria,  
O'Rourke, S.M. and Holden, N.M. (2011) The potential of near infrared lab based hyperspectral imaging for the determination of geochemical properties in Irish soils The 15th International Conference on Near Infrared Spectroscopy, 13 - 20th May, Cape Town, South Africa,  
Mr Mick O'Sullivan
Contini C, Katsikogianni MG, O¿Neill FT, O¿Sullivan M, Dowling DP and Monahan FJ (2011) Development of active packaging containing natural antioxidants 11th International Congress on Engineering and Food, Athens, 1001 - 1002  
McKernan, A, Ellis, A, Jacquier, JC, O'Sullivan, M and O'Riordan, ED. (2010) Microencapsulation of Feed Enzymes for Increased Thermal Stability 2010 EFFoST Annual Meeting, Dublin,  
A. Fox, A. Ellis, E. D. O'Riordan, M. O'Sullivan, J.C. Jacquier (2010) Copper encapsulation for trace mineral fortification of food 2011 EFFoST Annual Meeting, Dublin,  
Sherry, F, A, Ellis, A, Jacquier, JC, O'Sullivan, M, O'Riordan, ED. and Fanning, S. (2010) Effect of prebiotic strains on pathogens in companion animals EFFoST Annual Meeting 2010, Dublin,  
Dr Gordon Purvis
Purvis, G., Downey, L. (2011) Sustainably-Competitive Agricultural Systems: The Crucial Role of Education 7th Conference of Global Consortium of Higher Education and Research (GCHERA), Beauvais, France,   
McMahon, B.J., Anderson, A., Carnus, T., Helden, A., Sheridan, H., & Purvis, G (2011) How does animal stocking rate influence agricultural grassland biodiversity when measured at different scales? Conserving Farmland Biodiversity: Lessons learned & future prospects. Teagasc Biodiversity Conference, 78 - 79  
Carnus, T., Anderson, A., Breen, J., McMahon, B. J., Santorum, V., Sheridan, H. & Purvis, G. (2011) Probability of pollinator occurrence increases with duration of AES participation and floral diversity Conserving Farmland Biodiversity: Lessons learned & future prospects, Teagasc Biodiversity Conference, Ferrycarrig Hotel, Wexford, 52 - 53  
Sheridan, H., Keogh, B., Anderson, A., Carnus, T., McMahon, B., Green, S. & Purvis, G. (2011) Habitats in the irish farmed landscape Conserving Farmland Biodiversity: Lessons learned & future prospects. Teagasc Biodiversity Conference, 32 - 33  
Downey, L. & Purvis, G. (2011) Sustainably-Competitive Agriculture: Towards an Educational Perspective Teagasc National Conference: AGRICULTURAL EDUCATION: SUPPORTING ECONOMIC RECOVERY, Dublin Castle, 24 - 30   
Dr Tharmala Tharmalingam
Tharmalingam T, Li L, Mariño K, Abrahams J1, Doherty M1, Bones J1, O¿Donoghue N, Carrington SD, Rudd PM (2010) The development of a high throughput system for O-glycan analysis 2010 Annual Meeting of the Society for Glycobiology St Petersburg, FL,  
Dr Pádraig Wims
Wims, P. (2011) ICTs in Irish Agriculture: Can ICTs Improve Communication Between Agribusiness and Farmers? . In: Salampasis, M and A Matopoulos eds. 5th International Conference on Information and Communications Technologies in Agriculture, Food and Environment, Skiathos, Greece, 89 - 102  
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Published Reports
Dr Thomas Cummins
Cummins, Thomas, Harrington, Fiona and Neville, Pat (2011) Forest Health and Ecosystem Monitoring in Ireland, 2009. FutMon Project, Further Development and Implementation of an EU-Level Forest Monitoring System, project number LIFE07 ENV/D/000218. UCD Soil Science and Coillte Research & Environment, Dublin and Newtownmountkennedy.   
Davis, S., Megarry, W., Brady, C., Barton, K., Lewis, H., Mulrooney, G., Cummins, T., Guinan, L., Turner, J., Gallagher, C. and Meehan, R. With a contribution by Jordan, J. (2010) Boyne Valley Landscapes Project. Phase III Final Report. UCD and Heritage Council, Dublin.  
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Other Publications
Dr Alan Fahey
Fahey, AG (2011) Growing livestock connection between Ireland and Australia. Dublin: Newspaper Articles.  
Professor Maarten Nieuwenhuis
Bourke, R., Campbell, Z., Connaire, D., Corrigan, E., Hoban, L., McNulty, A., Shaw, B. and Walsh, S. (2011) UCD Forestry Excursion, The Black Forest, Germany. Dublin: Technical Publication.  
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