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UCD Institute of Food and Health

'One Scallop's rubbish…'. Image by Ms Dannielle Green.

'One Scallop's rubbish…'. Image by Ms Dannielle Green.

UCD Institute of Food and Health - Research Publications 2010/11

Below is the list of research publications for the UCD Institute of Food and Health in the academic year 2010/11




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Books
Professor Joseph Andrew McMahon
McMahon, J.A. (2011) The Negotiations for a New Agreement on Agriculture. Leiden, Boston: Martinus Nijhoff Publishers.  
Professor Da-Wen Sun
Da-Wen Sun (Editor) (2011) Handbook of Frozen Food Processing and Packaging, Second Edition. Boca Raton, Florida, USA: CRC Press / Taylor & Francis, 880pp.  
Da-Wen Sun (Editor) (2011) Handbook of Food Safety Engineering. Hoboken, New Jersey, USA: Wiley-Blackwell, 840 pp.  

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Book Chapters
Professor Francis Butler
McCarthy, U., Ayalew, G., Butler, F., McDonnell, K. and Ward, S. (2011) 'Ultra High Frequency (UHF) Radio Frequency Identification in Food Supply Chain Management Applications' In: Regina M. Samson (eds). Supply-Chain Management: Theories, Activities/Functions and Problems. NY: Nova Science Publishers.  
Dr Enda Cummins
Tiwari, U. and Cummins, E. (2011) 'Functional and physicochemical properties of legume fibers' In: Tiwari B, Gowen A and McKenna B (eds). Pulse Foods - Processing Quality and Nutraceutical Applications. USA: Elsevier.  
O'Brien, N. and Cummins, E. (2011) 'Nano-functionalized techniques in crop and livestock production: Improving food productivity, traceability and safety' In: Frewer l, Norde W, Fischer A and Kampers F (eds). Nantechnology in the agri-food sector: Implications for the future. USA: Wiley.  
Dr Kevin McDonnell
McCarthy, U., Ayalew, G., Butler, F., McDonnell, K. and Ward, S. (2011) 'Ultra High Frequency (UHF) Radio Frequency Identification in Food Supply Chain Management Applications' In: Regina M. Samson (eds). Supply-Chain Management: Theories, Activities/Functions and Problems. NY: Nova Science Publishers.  
Professor Joseph Andrew McMahon
McMahon, J.A. (2010) 'Standards in the WTO - Attitudes to Biotechnology' In: Globalisation and the Quest for Social and Environmental Justice. UK: Routledge.  
Mr Mick O'Sullivan
O'Sullivan, M. (2011) 'Analytical methods: Proximate and other Analyses' In: Fuquay JW, Fox PF and McSweeney PLH (eds). Encyclopaedia of Dairy Sciences, Second Edition, Vol.1. San Diego: Elsevier.  
O’Riordan, E.D., Duggan, E., O’Sullivan, M. and Noronha, N. (2011) 'Production of analogue cheeses' In: A.Y. Tamime (eds). Processed Cheese and Analogues. Chichester, UK: Wiley-Blackwell /Society of Dairy Technology.  
Professor Colin Scott
Halliday, S., Scott, C. (2010) 'Administrative Justice' In: Peter Cane & Herbert Kritzer (eds). Oxford Handbook of Empirical Legal Research. New York: Oxford University Press.  
Scott, C. (2010) 'Regulatory Crime: History,Functions, Problems Solutions' In: Ursula Kilkelly and Shane Kilcommins (eds). Regulatory Crime in Ireland. Dublin: First Law.  
Scott, C. (2010) 'Reflexive Governance, Regulation and Meta-Regulation: Control or Learning?' In: Olivier de Schutter & Jacques Lenoble (eds). Reflexive Governance: Redefining the Public Interest in a Pluralistic World. Oxford: Hart Publishing.  
Scott, C. (2010) 'Standard Setting in Regulatory Regimes' In: Robert Baldwin, Martin Lodge and Martin Cave (eds). The Oxford Handbook of Regulation. Oxford: Oxford University Press.  
Professor Da-Wen Sun
Lee, K.H. and Da-Wen Sun (2011) 'Plastic Packaging of Frozen Foods' In: Da-Wen Sun (eds). Handbook of Frozen Food Processing and Packaging, 2nd Edition. Boca Raton, Florida, USA: CRC Press / Taylor & Francis.  
Jackman, P. and Da-Wen Sun (2011) 'Computer Vision for Measuring Shape, Size and Colour in Foods' In: Y.-J. Cho (eds). Emerging Technologies for Food Quality and Food Safety Evaluation. Boca Raton, Florida, USA: CRC Press / Taylor & Francis.  
Norton, T. and Da-Wen Sun (2011) 'CFD: An Innovative and Effective Design Tool for the Food Industry' In: J. M. Aguilera, G. V. Barbosa-Cánovas, R. Simpson and J. Welti-Chanes (eds). Food Engineering at Interfaces. New York, USA: Springer.  
Delgado, A.E. and Da-Wen Sun (2011) 'Food Refrigeration' In: Da-Wen Sun (eds). Handbook of Food Safety Engineering. New Jersey, USA: Wiley-Blackwell.  
Mendoza, F., Valous, N.A., Delgado A.E. and Da-Wen Sun (2011) 'Multifractal Characterization of Apple Pore and Ham Fat-Connective Tissue Size Distributions using Image Analysis' In: J. M. Aguilera, G. V. Barbosa-Cánovas, R. Simpson and J. Welti-Chanes (eds). Food Engineering at Interfaces. New York, USA: Springer.  
Delgado A.E. and Da-Wen Sun (2011) 'Ultrasound Accelerated Freezing' In: Da-Wen Sun (eds). Handbook of Frozen Food Processing and Packaging, 2nd Edition. Boca Raton, Florida, USA: CRC Press / Taylor & Francis.  
Wang, S. and Da-Wen Sun (2011) 'Antifreeze Protein and Ice Nucleating Protein' In: Da-Wen Sun (eds). Handbook of Frozen Food Processing and Packaging, 2nd Edition. Boca Raton, Florida, USA: CRC Press / Taylor & Francis.  
Da-Wen Sun (2011) 'An Overview of Refrigeration Cycles' In: Da-Wen Sun (eds). Handbook of Frozen Food Processing and Packaging, 2nd Edition. Boca Raton, Florida, USA: CRC Press / Taylor & Francis.  
Delgado, A.E. and Da-Wen Sun (2011) 'Ultrasound-Assisted Freezing' In: H. Feng, J. Weiss and G. Barbosa-Cánovas (eds). Ultrasound Technologies for Food and Bioprocessing. USA: Springer.  
Professor Shane Ward
McCarthy, U., Ayalew, G., Butler, F., McDonnell, K. and Ward, S. (2011) 'Ultra High Frequency (UHF) Radio Frequency Identification in Food Supply Chain Management Applications' In: Regina M. Samson (eds). Supply-Chain Management: Theories, Activities/Functions and Problems. NY: Nova Science Publishers.  
   
Dr Paul Whyte
O’Brien, S., Whyte, P., Iversen, C. and Fanning, S (2011) 'Sampling, transport and sample preparation in emergency situations and rapid response' In: Hoorfar, J (eds). Rapid Detection, Characterization, and Enumeration of Foodborne Pathogens. Washington: ASM Press.  
Whyte, P., Haughton, P., O’Brien, S., Fanning, S., O’Mahony, E. and Murphy, M. (2011) 'Pathogens in milk: Campylobacter spp' In: Fuquay J.W., Fox, P.F., McSweeney, P.L.H (eds). Encyclopedia of Dairy Sciences. San Diego, USA: Academic Press.  
Whyte, P., Fanning, S., O’Brien, S., O’Grady, L. and Solomon, K (2011) 'Tracing pathogens in red meat and game production chains and at the abattoir' In: Brul, S., Fratamico, P.M., McMeekin, T.A (eds). Tracing Pathogens in the Food Chain. Cambridge: Woodhead Publishing.  
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Books Edited
Dr Enda Cummins
Cummins, E. and Curran, T. (Ed.). (2011) Biosystems Engineering Research Review 16. Dublin: UCD.  
Professor Ronan Gormley
Gormley, T.R. and Brunton, N. (Ed.). (2010) Fruit, Health and the Consumer. Dublin: Teagasc.  
Professor Helen Roche
Lanham-New, S.A., Macdonald, I.A. and Roche, H.M. (Ed.). (2011) Nutrition and Metabolism. United Kingdom: John Wiley & Sons Ltd.  
Professor Colin Scott
Scott, C., Cafaggi. F. and Senden, L. (Ed.). (2011) Transnational Private Regulation: Conceptual and Constitutional Debates. Oxford: Wiley-Blackwell.  
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Peer Reviewed Journals
Dr Tommy Boland
Navarro-Villa, A., O’Brien, M., López, S., Boland, T. and O’Kiely, P. (2011) 'In vitro rumen methane output of red clover and perennial ryegrass assayed using the gas production technique (GPT)'. Animal Feed Science and Technology, 168:152-164.  
Foley, P.A., Crosson, P., Lovett, D.K., Boland, T.M., O’Mara, F.P. and Kenny, D.A. (2011) 'Whole-farm systems modelling of greenhouse gas emissions from pastoral suckler beef cow production systems'. Agriculture, Ecosystems and Environment, 14:222-230.  
Purcell, P.J., O’Brien, M., Boland, T.M., O'Donovan, M. and O’Kiely, P. (2011) 'Impacts of herbage mass and sward allowance of perennial ryegrass sampled throughout the growing season on in vitro rumen methane production'. Animal Feed Science and Technology, 166:405-411.  
Deighton, M.H., O’Loughlin, B.M., Buckley F. and Boland, T.M. (2011) 'A simple method for pre-calibration storage of sulphurhexafluoride permeation tubes. Animal Feed Science and Technology'. Animal Feed Science and Technology, 166:198-200.  
Navarro-Villa, A., O’Brien, M., López, S., Boland, T.M. and O’Kiely, P. (2011) 'Modifications of a gas production technique for assessing in vitro rumen methane production from feedstuffs'. Animal Feed Science and Technology, 166:163-174.  
Purcell, P.J., O’Brien, M., Boland, T.M. and O’Kiely, P. (2011) 'In vitro rumen methane output of perennial ryegrass samples prepared by freeze drying or thermal drying (40°C)'. Animal Feed Science and Technology, 166:175-182.  
Crosson, P., Shalloob, L., O’Brien, D., Lanigan, G.J., Foley, P.A., Boland, T.M. and Kenny, D.A. (2011) 'A review of whole farm systems models of greenhouse gas emissions from beef and dairy cattle production systems'. Animal Feed Science and Technology, 166:29-45.  
O'Neill, B.F., Deighton, M.H., O'Loughlin, B.M., Mulligan, F.J., Boland, T.M., O'Donovan, M. and Lewis, E. (2011) 'Effects of a perennial ryegrass diet or total mixed ration diet offered to spring-calving Holstein-Friesian dairy cows on methane emissions, dry matter intake, and milk production'. Journal of Dairy Science, 94 (4):1941-1951.  
Ryan, W., Hennessy, D., Murphy, J.J., Boland, T.M. and Shalloo, L. (2011) 'A model of nitrogen efficiency in contrasting grass-based dairy systems'. Journal of Dairy Science, 94 (2):1032-1044.  
Creighton, P., Kennedy, E., Shalloo, L., Boland, T.M. and O’Donovan, M. (2011) 'A survey analysis of grassland dairy farming in Ireland, investigating grassland management, utilisation , uptake of grassland research technologies and the frequency and methods of sward renewal'. Grass and Forage Science, 66:251-264.  
Murphy, D.P., O'Doherty, J.V., Boland, T.M., O'Shea, C.J., Callan, J.J., Pierce, K.M. and Lynch, M.B. (2011) 'The effect of benzoic acid concentration on nitrogen metabolism, manure ammonia and odour emissions in finishing pigs'. Animal Feed Science and Technology, 163 (2-4):194-199.  
Wims, C.M., Deighton, M.H., Lewis, E., O'Loughlin, B., Delaby, L., Boland, T.M. and O'Donovan, M. (2010) 'Effect of pre-grazing herbage mass on methane production, dry matter intake, and milk production of grazing dairy cows during the mid-season period'. Journal of Dairy Science, 93 (10):4976-4985.  
Kelly, A.K., McGee, M., Crews, D.H., Sweeney, T., Boland, T.M. and Kenny, D.A. (2010) 'Repeatability of feed efficiency, carcass ultrasound, feeding behavior, and blood metabolic variables in finishing heifers divergently selected for residual feed intake'. Journal of Animal Science, 88 (1010):3214-3225.  
Dr Lorraine Brennan
Osorio, M.T., Moloney, A.P., Brennan, L. and Monahan, F.J. (2011) 'Authentication of beef production systems using a metabolomics based approach'. Animal 59(7):3295-3305    
Jin, Y., Amaral, A., McCann, A. and Brennan, L. (2011) 'Homocysteine levels impact directly on epigenetic reprogramming in astrocytes'. Neurochemistry International 58(7): 833-838.  
O'Sullivan, A., Gibney, M.J. and Brennan, L. (2011) 'Dietary intake patterns are reflected in metabolomic profiles: potential role in dietary assessment studies'. Clinical Nutrition, 93 (2):314-321.  
Rubio-Aliaga, I., de Roos, B., Sailer, M., McLoughlin G.A., Boekschoten, M.V., van Erk, M., Bachmair, E.M., Van Schothorst, E.M., Keijer, J., Coort, S.L., Evelo, C., Gibney, M.J., Daniel, H., Muller, M., Kleemann, R. and Brennan, L. (2011) 'Alterations in hepatic one-carbon metabolism and related pathways following a high fat dietary intervention'. Physiological Genomics, 43(8):408  
O'Sullivan, A., Gibney, M.J., Connor, A.O., Mion, B., Kaluskar, S., Cashman, K.D., Flynn, A., Shanahan, F. and Brennan, L. (2011) 'Biochemical and metabolomic phenotyping in the identification of a vitamin D responsive metabotype for markers of the metabolic syndrome'. Molecular Nutrition and Food Research, 55(5):679-690.  
Fan, Y., Murphy, T.B., Byrne, J., Brennan, L., Fitzpatrick, J. and Watson, R.W.G. (2011) 'Applying Random Forests to identify biomarker panels in serum 2D-DIGE data for the detection and staging of prostate cancer'. Journal of Proteome Research, 10 (3):1361-1373.  
O'Sullivan, A., Balducci, D., Paradisi, F., Cashman, K.D., Gibney, M.J. and Brennan, L. (2011) 'Effect of supplementation with vitamin D-3 on glucose production pathways in human subjects'. Molecular Nutrition and Food Research, 55:1018-1025.  
Nyamundanda, G., Brennan, L. and Gormley, I.C. (2010) 'Probabilistic principal component analysis for metabolomic data'. BMC Bioinformatics, 11 (571).  
Professor Francis Butler
Labite, H., Butler, F. and Cummins E. (2011) 'A Review and Evaluation of Plant Protection Product Ranking Tools Used in Agriculture'. Human and Ecological Risk Assessment, 17 (2):300-327.  
Ktenioudaki, A., Butler, F. and Gallagher, E. (2011) 'Dough characteristics of Irish wheat varieties II. Aeration profile and baking quality'. Lwt-Food Science and Technology, 44:602-610.  
Gonzales-Barron, U. and Butler, F. (2011) 'A comparison between the discrete Poisson-gamma and Poisson-lognormal distributions to characterise microbial counts in foods'. Food Control, 22:1279-1286.  
Ktenioudaki, A., Butler, F. and Gallagher, E. (2011) 'Dough characteristics of Irish wheat varieties I. Rheological properties and prediction of baking volume'. Lwt-Food Science and Technology, 44:594-601.  
Gonzales-Barron, U. and Butler, F. (2011) 'Characterisation of within-batch and between-batch variability in microbial counts in foods using Poisson-gamma and Poisson-lognormal regression models'. Food Control, 22:1268-1278.  
Patras, A., Brunton, N.P., Tiwari, B.K. and Butler, F. (2011) 'Stability and Degradation Kinetics of Bioactive Compounds and Colour in Strawberry Jam during Storage'. Food and Bioprocess Technology, 4:1245-1252.  
Barry, B., Barron, U.G., Butler, F., Ward, S. and McDonnell, K. (2011) 'Verification of sheep identity by means of a retinal recognition system'. Transactions of the ASABE, 54:1161-1167.  
Rossle, C., Gormley, T.R., Brunton, N. and Butler, F. (2011) 'Quality and Antioxidant Properties of Fresh-cut Apple Wedges from 10 Cultivars During Modified Atmosphere Packaging Storage'. Food Science and Technology International, 17:267-276.  
Keenan, D.F., Brunton, N., Gormley, T.R. and Butler, F. (2011) 'Effects of Thermal and High Hydrostatic Pressure Processing and Storage on the Content of Polyphenols and Some Quality Attributes of Fruit Smoothies'. Journal of Agricultural and Food Chemistry, 59:601-607.  
Keenan, D.F., Brunton, N., Butler, F., Wouters, R. and Gormley, T.R. (2011) 'Evaluation of thermal and high hydrostatic pressure processed apple purees enriched with prebiotic inclusions'. Innovative Food Science and Emerging Technologies, 12:261-268.  
Schvartzman, M.S., Maffre, A., Tenenhaus-Aziza, F., Sanaa, M., Butler, F. and Jordan, K. (2011) 'Modelling the fate of Listeria monocytogenes during manufacture and ripening of smeared cheese made with pasteurised or raw milk'. International Journal of Food Microbiology, 145:31-38.  
Rossle, C., Brunton, N., Gormley, T.R. and Butler, F. (2011) 'Quality and antioxidant capacity of fresh-cut apple wedges enriched with honey by vacuum impregnation'. International Journal of Food Science and Technology, 46:626-634.  
Rossle, C., Brunton, N., Gormley, T.R., Wouters, R. and Butler, F. (2011) 'Alginate Coating as Carrier of Oligofructose and Inulin and to Maintain the Quality of Fresh-Cut Apples'. Journal of Food Science, 76:19-29.  
Soumpasis, I. and Butler, F. (2011) 'Development of a Self-Regulated Dynamic Model for the Propagation of Salmonella Typhimurium in Pig Farms'. Risk Analysis, 31:63-77.  
Mc Carthy, U., Ayalew, G., Butler, F., McDonnell, K. and Ward, S. (2010) 'The Effect of increased Interrogation zone, Reader Antenna Polarisation and application factors in the performance of UHF RFID tag detection on Modified Atmosphere Packaged Meat'. Packaging Technology and Science, 23 (6):339-350.  
Dr Enda Cummins
O'Brien, N. and Cummins, E. (2011) 'A Risk Assessment Framework for Assessing Metallic Nanomaterials of Environmental Concern: Aquatic Exposure and Behavior'. Risk Analysis, 31 (5):706-726.  
Labite, H., Butler, F. and Cummins, E. (2011) 'A Review and Evaluation of Plant Protection Product Ranking Tools Used in Agriculture'. Human and Ecological Risk Assessment, 17 (2):300-327.  
Tiwari, U., Cummins, E., Sullivan, P., O'Flaherty, J., Brunton, N. and Gallagher, E. (2011) 'Probabilistic methodology for assessing the changes in the level and molecular weight of barley beta glucan during bread baking'. Food Chemistry, 124 (4):1567-1576.  
Chitlapilly, S., Cummins, E. and Abu-Ghannam, N. (2011) 'Prevalence and typing of Listeria monocytogenes strains in retail vacuum packed cold-smoked salmon in the Republic of Ireland'. Journal of Food Safety, 31 (1):21-27.  
Tiwari, U. and Cummins, E. (2010) 'Sensitivity analysis in predictive models for assessing the level of β-glucan in oats and barley cultivars using meta models'. Food and Bioprocess Technology, 3 (6):935-945.  
Coffey, R., Bergin, D. and Cummins, E. (2010) 'Use of meta-analysis to assess the effect of conventional water treatment methods on the prevalence of Cryptosporidium spp. in drinking water'. Human and Ecological Risk Assessment, 16 (6):1360-1378.  
Professor Séamus Fanning
Bolton, D.J., Monaghan, A., Byrne, B., Fanning, S., Sweeney, T. and McDowell DA (2011) 'Incidence and survival of non-O157 verocytotoxigenic Escherichia coli in soil'. Journal of Applied Microbiology, 111:484-490.  
Karczmarczyk, M., Martins, M., McCusker, M., Mattar, S., Amaral, L., Leonard, N., Aarestrup, F.M. and Fanning, S. (2010) 'Characterization of antimicrobial resistance in Salmonella enterica food and animal isolates from Colombia: identification of a qnrB19-mediated quinolone resistance marker in two novel serovars'. FEMS Microbiol Letters, 313:10-19.  
Burns, K., Skally, M., Solomon, K., Scott, L., McDermott, S., O'Flanagan, D., Fanning, S., Kyne, L., Fenelon, L. and Fitzpatrick, F. (2010) 'Clostridium difficile infection in the Republic of Ireland: results of a 1-month national surveillance and ribotyping project, March 2009'. Infection Control and Hospital Epidemiology, 31 (10):1085-1087.  
Burns, K., Skally, M., Solomon, K., Scott, L., McDermott, S., O'Flanagan, D., Fanning, S., Kyne, L., Fenelon, L. and Fitzpatrick F (2010) 'Clostridium difficile infection in the Republic of Ireland: results of a 1-month national surveillance and ribotyping project, March 2009'. Infection Control and Hospital Epidemiology: the Official Journal of the Society of Hospital Epidemiologists of America, 31 (10):1085-1087.  
Dr Eileen Gibney
Mills, J.L., Carter, T.C., Scott, J.M., Troendle, J.F., Gibney, E.R., Shane, B. Kirke, P.N., Ueland, P.M., Brody, L.C. and Molloy, A.M. (2011) 'Do high blood folate concentrations exacerbate metabolic abnormalities in people with low vitamin B-12 status?'. American Journal of Clinical Nutrition, 94(2): 495-500.  
Feeney, E., O'Brien, S., Scannell, A., Markey, A. and Gibney, E.R. (2010) 'Genetic variation in taste perception: does it have a role in healthy eating?'. The Proceedings of the Nutrition Society 70:1-9.  
Professor Mike Gibney
O'Sullivan, A., Gibney, M.J. and Brennan, L. (2011) 'Dietary intake patterns are reflected in metabolomic profiles: potential role in dietary assessment studies'. Clinical Nutrition, 93 (2):314-321.  
Rubio-Aliaga, I., de Roos, B., Sailer, M., McLoughlin, G.A., Boekschoten, M.V., van Erk, M., Bachmair, E.M., Van Schothorst, E.M., Keijer, J., Coort, S.L., Evelo, C., Gibney, M.J., Daniel, H., Muller, M., Kleemann, R. and Brennan, L. (2011) 'Alterations in hepatic one-carbon metabolism and related pathways following a high fat dietary intervention'. Physiological Genomics, 43(8):408  
O'Sullivan, A., Gibney, M.J., Connor, A.O., Mion, B., Kaluskar, S., Cashman, K.D., Flynn, A., Shanahan, F. and Brennan, L. (2011) 'Biochemical and metabolomic phenotyping in the identification of a vitamin D responsive metabotype for markers of the metabolic syndrome'. Molecular Nutrition and Food Research, 55(5):679-690.  
Hall, B., Steiling, W., Stafford, B., Coroama, M., Tozer, S., Firmani, C., McNamara, C. and Gibney, M.J. (2010) 'European Consumer Exposure To Cosmetic Products a Framework for Conducting Population Exposure Assessments Part 2'. Food and Chemical Toxicology 49:408-422.  
Tierney, A.C., McMonagle, J., Shaw, D.I., Gulseth, H.L., Helal, O., Saris, W.H., Paniagua, J.A., Go??bek-Leszczyñska, I., Defoort, C., Williams, C.M., Karsltröm, B., Vessby, B., Dembinska-Kiec, A., López-Miranda, J., Blaak, E.E., Drevon, C.A., Gibney, M.J., Lovegrove, J.A. and Roche, H.M. (2010) 'Effects of dietary fat on modification of insulin sensitivity and on other risk factors of the metabolic syndrome - Lipgene a European randomized dietary intervention study'. International Journal of Obesity, e pub ahead of print.  
Leite, J.C., Hearty, A.P., Nugent, A.P. and Gibney, M.J. (2010) 'A method for assessing dietary intakes of n-3 long-chain polyunsaturated fatty acids and trans fatty acids in an Irish adult population'. International Journal of Food Science and Nutrition, 61 (6):583-599.  
Iménez-Gómez, Y., Marín, C., Peérez-Martínez, P., Hartwich, J., Malczewska-Malec, M., Golabek, I., Kiec-Wilk, B., Cruz-Teno, C., Rodríguez, F., Gómez, P., Gómez-Luna, M.J., Defoort, C., Gibney, M.J., Pérez-Jiménez, F., Roche, H.M. and López-Miranda, J. (2010) 'A low-fat, high-complex carbohydrate diet supplemented with long-chain (n-3) fatty acids alters the postprandial lipoprotein profile in patients with metabolic syndrome'. Journal of Nutrition, 140 (9):1595-1601.  
Professor Ronan Gormley
Gormley, T.R. (2010) 'Ethics and sustainability in the seafood chain'. Food Science and Technology, 24 (3):14-17.  
Professor Nick Holden
O'Rourke, S.M., and Holden, N.H. (2011) 'Optical sensing and chemometric analysis of soil organic carbon - a cost effective alternative to conventional laboratory methods?' Soil Use and Management, 27 (2):143-155.  
Tang, J.L., McDonald, S., Peng, X.H., Samadder, S.R., Murphy, T.M. and Holden, N.M. (2011) 'Modelling Cryptosporidium oocysts transport in small ungauged agricultural catchments'. Water Research 45(12):3665-3680.  
Cao, J., Holden, N.M., Lu, X.T. and Du, G. (2011) 'The effect of grazing management on plant species richness on the Qinghai-Tibetan Plateau'. Grass and Forage Science, 66:333-336.  
Piwowarczyk, A., Giuliani, G. and Holden, N.M. (2011) 'Can soil moisture deficit be used to forecast when soils are at high risk of damage owing to grazing animals?’ Soil Use and Management, 27:255-263.  
Holden, N.M., Connolly, J., Seaquist, J.W. and Ward, S.M. (2011) 'Detecting recent disturbance on Montane blanket bogs in the Wicklow Mountains, Ireland using the MODIS enhanced vegetation index'. International Journal of Remote Sensing, 32:2377-2393.  
O'Rourke, S.M., Argentati, I. and Holden, N.M. (2011) 'The effect of region of interest size on model calibration for soil organic carbon prediction from hyperspectral images of prepared soils'. Journal of Near Infrared Spectroscopy, 19:161-170.  
Holden, N.M. and Connolly, J. (2011) 'Estimating the carbon pool of a blanket peat region using a peat depth inference model'. Catena, 86:75-85.  
Connolly, J., Holden, N.M., Connolly, J., Seaquist, J.W. and Ward, S.W. (2011) 'Detecting recent disturbance on Montane blanket bogs in the Wicklow Mountains, Ireland using the MODIS enhanced vegetation index'. International Journal of Remote Sensing, 32 (9):2377-2393.  
Dr Jean-Christophe Jacquier
Harbourne, N., Jacquier, J.C. and O'Riordan, D. (2011) 'Effects of addition of phenolic compounds on the acid gelation of milk'. International Dairy Journal, 21 (3):185-191.  
Marete, E.N., Jacquier, J.C. and O’Riordan, D. (2011) 'Feverfew as a source of bioactives for functional foods: Storage stability in model beverages'. Journal of Functional Foods, 3 (1):38-43.  
Dr James Lyng
Munoz, A., Palgan, I., Noci, F., Morgan, D.J., Cronin, D.A., Whyte, P. and Lyng, J.G. (2011) 'Combinations of High Intensity Light Pulses and Thermosonication for the inactivation of Escherichia coli in orange juice'. Food Microbiology, 28 (6):1200-1204.  
Caminiti, I.M., Noci, F., Munoz, A., Whyte, P., Morgan, D.J., Cronin, D.A. and Lyng, J.G. (2011) 'Impact of selected combinations of non-thermal processing technologies on the quality of an apple and cranberry juice blend'. Food Chemistry, 124 (4):1387-1392.  
Caminiti, I.M., Palgan, I., Noci, F., Munoz, A., Whyte, P., Cronin, D.A., Morgan, D.J. and Lyng, J.G. (2011) 'The effect of pulsed electric fields (PEF) in combination with high intensity light pulses (HILP) on Escherichia coli inactivation and quality attributes in apple juice'. Innovative Food Science and Emerging Technologies, 12 (2):118-123.  
Palgan, I., Caminiti, I.M., Munoz, A., Noci, F., Whyte, P., Morgan, D.J., Cronin, D.A. and Lyng, J.G. (2011) 'Combined effect of selected non-thermal technologies on Escherichia coli and Pichia fermentans inactivation in an apple and cranberry juice blend and on product shelf life'. International Journal of Food Microbiology, 151 (1):1-6.  
Zell, M., Lyng, J.G., Morgan, D.J. and Cronin, D.A. (2011) 'Minimising heat losses during batch ohmic heating of solid food'. Food and Bioproducts Processing, 89:128-134.  
Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A., Fanning, S. and Whyte, P. (2011) 'Efficacy of high intensity pulsed light for the microbiological decontamination of poultry, associated packaging and contact surfaces'. Foodborne Pathogens and Disease, 8:109-117.  
Haughton, P.N., Lyng, J., Cronin, D.A., Morgan, D.J., Fanning, S. and Whyte, P. (2011) 'Efficacy of UV light treatment for the microbiological decontamination of chicken, associated packaging and contact surfaces'. Journal of Food Protection, 74:565-572. Arimi, J.M., Duggan, E., O'Sullivan, M., Lyng, J.G. and O'Riordan, E.D. (2011) 'Effect of protein starch ratio on microwave expansion of imitation cheese based product'. Food Hydrocolloids, 25 (5):1069-1076.  
Dr Kevin McDonnell
Fagan, C.C., Everard, C.D. and McDonnell, K. (2011) 'Prediction of moisture, calorific value, ash and carbon content of two dedicated bioenergy crops using near-infrared spectroscopy'. Bioresource Technology, 102:5200-5206.  
Barry, B., Barron, U.G., Butler, F., Ward, S, and McDonnell, K. (2011) 'Verification of sheep identity by means of a retinal recognition system'. Transactions of the ASABE, 54:1161-1167.  
Mc Inerney, B., Corkery, G., Ayalew, G., Ward, S. and Mc Donnell, K. (2011) 'Preliminary in vivo study on the potential application of a novel method of e-tracking to facilitate traceability in the poultry food chain'. Computers and Electronics in Agriculture, 77:1-6.  
McDonnell K. (2011) 'Combustion Characteristics of Peat with Meat and Bone Meal in a Pilot'. The open fuels and energy science journal, 4:9-16.  
McCarthy, U., Ayalew, G., Butler, F., McDonnell, K. and Ward, S. (2010) 'The Effect of increased Interrogation zone, Reader Antenna Polarisation and application factors in the performance of UHF RFID tag detection on Modified Atmosphere Packaged Meat'. Packaging Technology and Science, 23 (6):339-350.  
Professor Joseph Andrew McMahon
McMahon, J.A. (2011) 'Biodiversity and Food - the WTO TRIPS Negotiations'. Journal of Human Rights and the Environment, 2 (2):217-234.  
Switzer, S. and McMahon, J.A. (2011) 'EU Biofuels Policy - Raising the Question of WTO Compatibility'. International and Comparative Law Quarterly, 60:713-736.  
Professor Frank Monahan
Osorio, M.T., Moloney, A.P., Brennan, L. and Monahan, F.J. (2011) 'Authentication of beef production systems using a metabolomics based approach'. Animal.  
Caprioli, I., O'Sullivan, M. and Monahan, F.J. (2011) 'Interference of sodium caseinate in the TBARS assay'. Food Chemistry, 124:1284-1287.  
Osorio, M.T, Moloney, A.P., Schmidt, O. and Monahan, F.J. (2011) 'Multielement isotope analysis of bovine muscle for determination of international geographical origin of meat'. Journal of Agricultural and Food Chemistry, 59 (7):3285-3294.  
Osorio, M.T, Moloney, A.P., Schmidt, O. and Monahan, F.J. (2011) 'Beef authentication and retrospective dietary verification using stable isotope ratio analysis of bovine muscle and tail hair'. Journal of Agricultural and Food Chemistry, 59 (7):3295-3305.  
Dunne, P.G., Rogalski, J., Childs, S, Monahan, F.J., Kenny, D.A. and Moloney, A.P. (2011) 'Long chain n-3 polyunsaturated fatty acid concentration and color and lipid stability of muscle from heifers offered a ruminally protected fish oil supplement'. Journal of Agricultural and Food Chemistry, 59:5015-5025.  
Rohrle, F.T., Moloney, A.P., Black, A., Osorio, M.T., Sweeney, T., Schmidt, O. and Monahan FJ (2011) 'alpha-Tocopherol stereoisomers in beef as an indicator of vitamin E supplementation in cattle diets'. Food Chemistry, 124 (3):935-940.  
Harrison, S.M., Schmidt, O., Moloney, A.P., Kelly, S.D., Rossmann, A., Schellenberg, A., Camin, F., Perini, M., Hoogewerff, J. and Monahan F.J. (2011) 'Tissue turnover in ovine muscle and lipids as recorded by multiple (H, C, O, S) stable isotope ratios'. Food Chemistry, 124 (1):291-297.  
Dunne, P.D., Monahan, F.J. and Moloney, A.P. (2011) 'Current perspectives on the darker beef often reported from extensively-managed cattle: Does physical activity play a significant role?' Livestock Science, 142:1-22.  
Vasta, V., Luciano, G., Dimauro, C., Röhrle, F., Priolo, A., Monahan, F.J. and Moloney, A.P. (2011) 'The volatile profile of longissimus dorsi muscle of heifers fed pasture, pasture silage or cereal concentrate: implication for dietary discrimination'. Meat Science, 87 (3):282-289.  
Röhrle, F.T., Moloney, A.P., Osorio, M.T., Luciano, G., Priolo, A., Caplan, P., and Monahan, F.J. (2011) 'Carotenoids, colour and reflectance parameters in bovine adipose tissue to discriminate between feeding systems'. Meat Science, 88:347-353.  
Auerswald, K., Rossmann, A., Schäufele, R., Schwertl, M., Monahan, F.J. and Schnyder, H. (2011) 'Does natural weathering change the stable isotope composition (2H, 13C, 15N, 18O and 34S) of cattle hair?'. Rapid Communications in Mass Spectrometry, 25:1-8.  
Luciano, G., Moloney, A.P., Priolo, A., Röhrle, F.T., Vasta, V., Biondi, L., L?pez-Andrés, P., Grasso, S. and Monahan, F.J. (2011) 'Pro-oxidant and antioxidant components in muscle and the oxidative stability of beef from cattle grown on forage or concentrate-based rations'. Journal of Animal Science, 89:3759-3768.  
Noci, F., Monahan, F.J. and Moloney, A.P. (2011) 'The fatty acid profile of muscle and adipose tissue of lambs fed camelina or linseed as oil or seeds'. Animal, 5 (1):134-147.  
Luciano, G., Vasta, V., Monahan, F.J., López-Andrés, P., Biondi, L., Lanza, M. and Priolo, A. (2011) 'Antioxidant status, colour stability and myoglobin resistance to oxidation of longissimus dorsi muscle from lambs fed a tannin-containing diet'. Food Chemistry, 124:1036-1042.  
Professor John O'Doherty
Varley, P.F., Flynn, B., Callan, J.J. and O'Doherty, J.V. (2011) 'Effect of crude protein and phosphorus level on growth performance, bone mineralisation and phosphorus, calcium and nitrogen utilisation in grower-finisher pigs'. Archives of Animal Nutrition, 65 (2):134-147.  
Leonard, S.G., Sweeney, T., Bahar, B., Lynch, B.P. and O'Doherty, J.V. (2011) 'Effect of dietary seaweed extracts and fish oil supplementation in sows on performance, intestinal microflora, intestinal morphology, volatile fatty acid concentrations and immune status of weaned pigs'. British Journal of Nutrition, 105 (4):549-560.  
Varley, P.F., Sweeney, T., Ryan, M.T. and O'Doherty, J.V. (2011) 'The effect of phosphorus restriction during the weaner-grower phase on compensatory growth, serum osteocalcin and bone mineralization in gilts'. Livestock Science, 135 (2-3):282-288.  
Ryan, W.F., Lynch, P.B. and O'Doherty, J.V. (2011) 'Effect of dietary phosphorus on the development of bone mineral density of pigs assessed using dual energy X-ray absorptiometry'. Livestock Science, 137 (1-3):101-107.  
McDonnell, P., O’Shea, C., Figat, S., Callan, J.J. and O’Doherty, J.V. (2011) 'The response of growth performance, nitrogen and phosphorus excretion of growing-finishing pigs to diets containing incremental levels of maize dried distiller’s grains with soluble'. Animal Feed Science and Technology, 169 (1-2):104-112.  
Pauly, C., Spring, P., Gahan, D. and O’Doherty, J.V. (2011) 'The effect of cereal type and enzyme supplementation on carcass characteristics, volatile fatty acids and intestinal microflora and boar taint in entire male pigs'. Animal, 5 (3):378-386.  
Alam, T., Bahar, B., Waters, S.M., McGee, M., O'Doherty, J.V. and Sweeney, T. (2011) 'Functional characterisation of the bovine neuropeptide Y gene promoter and evaluation of the transcriptional activities of promoter haplotypes'. Molecular Biology Reports, PMID:21562764 .  
O'Shea, C.J., Sweeney, T., Lynch, M.B., Callan, J.J. and O'Doherty, J.V. (2011) 'Modification of selected bacteria and markers of protein fermentation in the distal gastrointestinal tract of pigs upon consumption of chitosan is accompanied by heightened manure odor emissions'. Journal of Animal Science, 89 (5):1366-1375.  
Smith, A.G., O'Doherty, J.V., Reilly, P., Ryan, M.T., Bahar, B. and Sweeney, T. (2011) 'The effects of laminarin derived from Laminaria digitata on measurements of gut health: selected bacterial populations, intestinal fermentation, mucin gene expression and cytokine gene expression in the pig'. The British Journal of Nutrition, 105 (5):669-677.  
Hager, A.S., Ryan, L.A.M., Schwab, C., Ganzle, M., O'Doherty, J.V. and Arendt, E.K. (2011) 'Influence of the soluble fibres inulin and oat β-glucan on quality of dough and bread'. European Food Research and Technology, 232 (3):405-413.  
Sweeney, T., Dillon, S., Fanning, J., Egan, J., O'Shea, C.J., Figat, S., Gutierrez, J.J.M., Mannion, C., Leonard, F. and O'Doherty, J.V. (2011) 'Evaluation of seaweed-derived polysaccharides on indices of gastrointestinal fermentation and selected populations of microbiota in newly weaned pigs challenged with Salmonella Typhimurium'. Animal Feed Science and Technology, 165 (1-2):85-94.  
O'Shea, C.J., Sweeney, T., Lynch, M.B., Gahan, D.A., Flynn, B.A. and O'Doherty, J.V. (2011) 'The effect of introducing purified beta-glucans to a wheat-based diet on total tract digestibility and gaseous manure emissions from pigs as compared with consumption of a beta-glucan-rich, barley-based diet'. Animal Feed Science and Technology, 165 (1-2):95-104.  
Ryan, W.F., Lynch, P.B. and O'Doherty, J.V. (2011) 'Compensatory effect of dietary phosphorus on performance of growing pigs and development of bone mineral density assessed using dual energy X-ray absorptiometry'. Livestock Science, 138 (1-3):89-95.  
Varley, P.F., Callan, J.J. and O'Doherty, J.V. (2011) 'Effect of dietary phosphorus and calcium level and phytase addition on performance, bone parameters, apparent nutrient digestibility, mineral and nitrogen utilization of weaner pigs and the subsequent effect on finisher pig bone parameters'. Animal Feed Science and Technology, 165 (3-4):201-209.  
Varley, P.F., Flynn, B., Callan, J.J. and O'Doherty, J.V. (2011) 'Effect of phytase level in a low phosphorus diet on performance and bone development in weaner pigs and the subsequent effect on finisher pig bone development'. Livestock Science, 138 (1-3):152-158.  
Meade, G., Pierce, K., O'Doherty, J.V., Mueller, C., Lanigan, G. and Mc Cabe, T. (2011) 'Ammonia and nitrous oxide emissions following land application of high and low nitrogen pig manures to winter wheat at three growth stages'. Agriculture, Ecosystems and Environment, 140 (1-2):208-217.  
Murphy, D.P., O'Doherty, J.V., Boland, T.M., O'Shea, C.J., Callan, J.J., Pierce, K.M. and Lynch, M.B. (2011) 'The effect of benzoic acid concentration on nitrogen metabolism, manure ammonia and odour emissions in finishing pigs'. Animal Feed Science and Technology, 163 (2-4):194-199.  
O'Shea, C.J., Lynch, M.B., Sweeney, T., Gahan, D.A., Callan, J.J. and O'Doherty, J.V. (2010) 'Comparison of a wheat-based diet supplemented with purified {beta}-glucans, with an oat-based diet on nutrient digestibility, nitrogen utilization, distal gastrointestinal composition and manure odor and ammonia emissions from finishing pigs'. Journal of Animal Science, 89 (2):438-447.  
Leonard, S.G., Sweeney, T., Bahar, B., Lynch, B.P. and O'Doherty, J.V. (2010) 'Effect of maternal fish oil and seaweed extract supplementation on colostrum and milk composition, humoral immune response, and performance of suckled piglets'. Journal of Animal Science, 88 (9):2988-2997.  
Professor Colm O'Donnell
Gowen, A.A., Downey, G., Esquerre, C. and O'Donnell, C.P. (2011) 'Preventing over-fitting in PLS calibration models of near-infrared (NIR) spectroscopy data using regression coefficients'. Journal of Chemometrics, 25 (7, SI):375-381.  
Taghizadeh, M., Gowen, A.A. and O'Donnell, C.P. (2011) 'The potential of visible-near infrared hyperspectral imaging to discriminate between casing soil, enzymatic browning and undamaged tissue on mushroom (Agaricus bisporus) surfaces'. Computers and Electronics in Agriculture, 77 (1):74-80.  
Everard, C.D., O'Callaghan, D.J., Mateo, M.J., Castillo, M., Payne, F.A. and O'Donnell, C.P. (2011) 'Effects of milk composition, stir-out time, and pressing duration on curd moisture and yield'. Journal of Dairy Science, 94 (6):2673-2679.  
Torres, B., Tiwari, B.K., Patras, A., Cullen, P.J., Brunton, N. and O'Donnell, C.P. (2011) 'Stability of anthocyanins and ascorbic acid of high pressure processed blood orange juice during storage'. Innovative Food Science and Emerging Technologies, 12 (2):93-97.  
Taghizadeh, M., Gowen, A.A. and O'Donnell, C.P. (2011) 'Comparison of hyperspectral imaging with conventional RGB imaging for quality evaluation of Agaricus bisporus mushrooms'. Biosystems Engineering, 108 (2):191-194.  
Torres, B., Tiwari, B.K., Patras, A., Wijngaard, H.H., Brunton, N., Cullen, P.J. and O'Donnell, C.P. (2011) 'Effect of ozone processing on the colour, rheological properties and phenolic content of apple juice'. Food Chemistry, 124 (3):721-726.  
Hennessy, S., Downey, G. and O'Donnell, C.P. (2010) 'Attempted Confirmation of the Provenance of Corsican PDO Honey Using FT-IR Spectroscopy and Multivariate Data Analysis'. Journal of Agriculture and Food Chemistry, 58 (17):9401-9406.  
Adekunte, A.O., Tiwari, B.K. and O'Donnell, C.P. (2010) 'Exposure assessment of dioxins and dioxin-like PCBs in pasteurised bovine milk using probabilistic modelling'. Chemosphere, 81 (4):509-516.  
Adekunte, A.O., Tiwari, B.K., Cullen, P.J., Scannell, A.G.M. and O'Donnell, C.P. (2010) 'Effect of sonication on colour, ascorbic acid and yeast inactivation in tomato juice'. Food Chemistry, 122 (3):500-507.  
Professor Dolores O'Riordan
Halpin, R.M., Brady, D.B. and O'Riordan, E.D. (2011) 'The effect of untreated and enzyme treated commercial dairy powders on the growth and adhesion of Streptococcus mutans'. Lwt-Food Science and Technology, 44 (6):1525-1532.  
Arimi, J.M., Duggan, E., O'Sullivan, M., Lyng, J.G. and O'Riordan, E.D. (2011) 'Effect of protein starch ratio on microwave expansion of imitation cheese based product'. Food Hydrocolloids, 25 (5):1069-1076.  
El-Bakry, M., Duggan, E., O'Riordan, E.D. and O'Sullivan, M. (2011) 'Reducing salt in imitation cheese; Effects on manufacture and functional properties'. Food Research International, 100 (4):1650-1655.  
El-Bakry, M., Duggan, E., O'Riordan, E.D. and O'Sullivan, M. (2011) 'Casein hydration and fat emulsification during manufacture of imitation cheese and effects of emulsifying salts reduction'. Journal of Food Engineering, 103 (2):179-187.  
Harbourne, N., Jacquier, J.C. and O'Riordan, E.D. (2011) 'Effects of addition of phenolic compounds on the acid gelation of milk'. International Dairy Journal, 21 (3):185-191.  
El-Bakry, M., Duggan, E., O'Riordan, E.D. and O'Sullivan, M. (2011) 'Effect of chelating salt type on casein hydration and fat emulsification during manufacture and post-manufacture functionality of imitation cheese'. Journal of Food Engineering, 2 (102):145--153.  
Marete, E.N., Jacquier, J.C. and O'Riordan, D (2011) 'Feverfew as a source of bioactives for functional foods: Storage stability in model beverages'. Journal of Functional Foods, 3 (1):38-43.  
El-Bakry, M., Duggan, E., O'Riordan, E.D. and O'Sullivan, M. (2011) 'Effect of cation, sodium or potassium, on casein hydration and fat emulsification during imitation cheese manufacture and post manufacture functionality'. LWT - Food Science and Technology, 44 (10):2012-2018.  
Mr Mick O'Sullivan
Caprioli, I., O'Sullivan, M. and Monahan, F.J. (2011) 'Interference of sodium caseinate in the TBARS assay'. Food Chemistry, 124:1284-1287.  
El-Bakry, M., Duggan, E., O'Riordan, E.D. and O'Sullivan, M. (2011) 'Effect of chelating salt type on casein hydration and fat emulsification during manufacture and post-manufacture functionality of imitation cheese'. Journal of Food Engineering, 2 (102):145--153.  
Halpin, R.M. Brady. D.B., O’Riordan, E.D. and O'Sullivan, M. (2011) 'Determination of the effect of dairy powders on adherence of Streptococcus sobrinus and Streptococcus salivarius to hydroxylapatite and growth of these bacteria'. Journal of Functional Foods, 3:280-289.  
Halpin, R.M. Brady. D.B., O’Riordan, E.D. and O’Sullivan, M. (2011) 'The Effect of Untreated and Enzyme-Treated Commercial Dairy Powders on the Growth and Adhesion of Streptococcus mutans'. Lwt-Food Science and Technology, 44:1525-1532.  
El-Bakry, M., Duggan, E., O’Riordan, E.D. and O'Sullivan, M. (2011) 'Effect of cation, sodium or potassium, on casein hydration and fat emulsification during imitation cheese manufacture'. Lwt-Food Science and Technology, 44:2012-2018.  
El-Bakry, M., Beninati, F., Duggan, E., O’Riordan, E.D. and O’Sullivan, M (2011) 'Reducing salt in imitation cheese: effects on manufacture and functional properties'. Food Research International, 44:589-596. El-Bakry, M., Duggan, E., O'Riordan, E.D. and O'Sullivan, M. (2011) 'Casein hydration and fat emulsification during manufacture of imitation cheese and effects of emulsifying salts reduction'. Journal of Food Engineering, 103 (2):179-187.Arimi, J.M., Duggan, E., O'Sullivan, M., Lyng, J.G. and O'Riordan, E.D. (2011) 'Effect of protein starch ratio on microwave expansion of imitation cheese based product'. Food Hydrocolloids, 25 (5):1069-1076.  
Dr Karina Pierce
Whelan, S. J., Mulligan, F. J., Flynn, B., McCarney, C., and Pierce, K. M. (2011) 'Effect of forage source and a supplementary methionine hydroxyl analogue on nitrogen balance in lactating dairy cows offered a low crude protein diet'. Journal of Dairy Science, 94:5080-5089.  
Prendiville, R., Pierce, K.M., Delaby, L. and Buckley, F. (2011) 'Animal performance and production efficiencies of Holstein-Friesian, Jersey and Jersey×Holstein-Friesian cows throughout lactation'. Livestock Science, 138:25-33.  
McCarthy, B., Delaby, L., Pierce, K.M., Journot, F. and Horan, B. (2011) 'Meta-analysis of the impact of stocking rate on the productivity of pasture-based milk production systems'. Animal, 5(5):784-794.  
Meade, G., Pierce, K., O'Doherty, J.V., Mueller, C., Lanigan, G. and Mc Cabe, T. (2011) 'Ammonia and nitrous oxide emissions following land application of high and low nitrogen pig manures to winter wheat at three growth stages'. Agriculture, Ecosystems and Environment, 140 (1-2):208-217.  
Murphy, D.P., O'Doherty, J.V., Boland, T.M., O'Shea, C.J., Callan, J.J., Pierce, K.M. and Lynch, M.B. (2011) 'The effect of benzoic acid concentration on nitrogen metabolism, manure ammonia and odour emissions in finishing pigs'. Animal Feed Science and Technology, 163 (2-4):194-199.  
Coleman, J., Pierce, K.M., Berry, D.P., Brennan A. and Horan B. (2010) 'Dry matter intake and feed efficiency profiles of 3 genotypes of Holstein-Friesian within pasture-based systems of milk production'. Journal of Dairy Science, 92 (2):4318-4331.  
Coleman, J., Pierce, K.M., Berry, D.P., Brennan, A. and Horan B. (2010) 'Increasing milk solids production across lactation through genetic selection and intensive pasture-based feed system'. Journal of Dairy Science, 93 (9):4302-4317.  

Professor Helen Roche
McGillicuddy, F.C., Harford, K.A., Reynolds, C.M., Oliver, E., Claessens, M., Mills, K.H.G. and Roche, H.M. (2011) 'Lack of Interleukin-1 Receptor I (IL-1RI) Protects Mice From High-Fat Diet Induced Adipose Tissue Inflammation Coincident With Improved Glucose Homeostasis'. Diabetes, 60:1688-1698.  
van Hees, A.M.J., Jans, A,, Hul, G.B., Roche, H.M., Saris, W.H.M. and Blaak, E.E. (2011) 'Skeletal Muscle Fatty Acid Handling in Insulin Resistant Men'. Obesity, 19:1350-1359.  
Perez-Martinez, P., Delgado-Lista, J., Garcia-Rios, A., Ferguson, J.F., Gulseth, H.L., Williams, C.M., Karlstrom, B., Kiec-Wilk, B., Blaak, E.E., Helal, O., Malczewska-Malec, M,, Defoort, C., Riserus, U,, Saris, W.H., Lovegrove, J.A., Drevon, C.A., Roche, H.M. and Lopez-Miranda, J. (2011) 'Calpain-10 interacts with plasma saturated fatty acid concentrations to influence insulin resistance in individuals with the metabolic syndrome'. American Journal of Clinical Nutrition, 93:1136-1141.  
Perez-Martinez, P., Delgado-Lista, J., Garcia-Rios, A., Mc Monagle, J., Gulseth, H.L., Ordovas, J.M., Shaw, D.I., Karlstrom, B., Kiec-Wilk, B., Blaak, E.E., Helal, O., Malczewska-Malec, M., Defoort, C., Riserus, U., Saris, W.H.M., Lovegrove, J.A., Drevon, C.A., Roche, H.M. and Lopez-Miranda, J. (2011) 'Glucokinase Regulatory Protein Genetic Variant Interacts with Omega-3 PUFA to Influence Insulin Resistance and Inflammation in Metabolic Syndrome'. PLoS ONE 6(6): e20555. doi:10.1371/journal.pone.0020555  
Delgado-Lista, J., Perez-Martinez, P., Garcia-Rios, A., Phillips, C.M., Williams, C.M., Gulseth, H.L., Helal, O., Blaak, E.E., Kiec-Wilk, B., Basu, S., Drevon, C.A., Defoort, C., Saris, W.H., Wybranska, I., Riserus, U., Lovegrove, J.A., Roche, H.M. and Lopez-Miranda, J .(2011) 'Pleiotropic effects of TCF7L2 gene variants and its modulation in the metabolic syndrome: From the LIPGENE study'. Atherosclerosis, 214:110-116.  
Draper, E., Reynolds, C.M., Canavan, M., Mills, K.H., Loscher, C.E. and Roche, H.M. (2011) 'Omega-3 fatty acids attenuate dendritic cell function via NF-kappa B independent of PPAR gamma'. Journal of Nutritional Biochemistry, 22:784-790.  
Tierney, A.C., McMonagle, J., Shaw, D.I., Gulseth, H.L., Helal, O., Saris, W.H.M., Paniagua, J.A., Golabek-Leszczynska, I., Defoort, C., Williams, C.M., Karsltrom, B., Vessby, B., Dembinska-Kiec, A., Lopez-Miranda, J., Blaak, E.E., Drevon, C.A., Gibney, M.J., Lovegrove, J.A. and Roche, H.M. (2011) 'Effects of dietary fat modification on insulin sensitivity and on other risk factors of the metabolic syndrome-LIPGENE: a European randomized dietary intervention study'. International Journal of Obesity, 35:800-809.  
Phillips, C.M., Goumidi, L., Bertrais, S., Field, M.R., McManus, R., Hercberg, S., Lairon, D., Planells, R. and Roche, H.M. (2011) 'Gene-nutrient interactions and gender may modulate the association between ApoA1 and ApoB gene polymorphisms and metabolic syndrome risk'. Atherosclerosis, 214 (2):408-415.  
Garcia-Rios, A., Delgado-Lista, J., Perez-Martinez, P., Phillips, C.M., Ferguson, J.F., Gjelstad, I.M., Williams, C.M., Karlström, B., Kie?-Wilk, B., Blaak, E.E., Lairon, D., Planells, R., Malczewska-Malec, M., Defoort, C., Riserus, U., Saris, W.H., Lovegrove, J.A., Drevon, C.A., Roche, H.M. and Lopez-Miranda, J. (2011) 'Genetic variations at the lipoprotein lipase gene influence plasma lipid concentrations and interact with plasma n-6 polyunsaturated fatty acids to modulate lipid metabolism'. Atherosclerosis, 218 (2):416-422.  
Jans, A., Sparks, L.M., van Hees, A.M., Gjelstad, I.M., Tierney, A.C., Risérus, U., Drevon, C.A., Roche, H.M., Schrauwen, P. and Blaak, E.E. (2011) 'Transcriptional metabolic inflexibility in skeletal muscle among individuals with increasing insulin resistance'. Obesity, 19 (11):2158-2166.  
Phillips, C.M., Goumidi, L., Bertrais, S., Field, M.R., Cupples, L.A., Ordovas, J.M., McMonagle, J., Defoort, C., Lovegrove, J.A., Drevon, C.A., Blaak, E.E., Kiec-Wilk, B., Riserus, U., Lopez-Miranda, J., McManus, R., Hercberg, S., Lairon, D., Planells, R. and Roche, H.M. (2010) 'ACC2 gene polymorphisms, metabolic syndrome, and gene-nutrient interactions with dietary fat'. Journal of Lipid Research, 51 (12):3500-3507.  
O'Connor, A., Gibney, J. and Roche, H.M. (2010) 'Metabolic and hormonal aspects of polycystic ovary syndrome: the impact of diet'. The Proceedings of the Nutrition Society, 69 (4):628-635.  
Morine, M.J., McMonagle, J., Toomey, S., Reynolds, C.M., Moloney, A.P., Gormley, I.C., O’Gaora, P. and Roche, H.M. (2010) 'Bi-directional gene set enrichment and canonical correlation analysis identify key diet-sensitive pathways and biomarkers of metabolic syndrome'. BMC Bioinformatics, 11 (1).  
Iménez-Gómez, Y., Marín, C., Peérez-Martínez, P., Hartwich, J., Malczewska-Malec, M., Golabek, I., Kiec-Wilk, B., Cruz-Teno, C., Rodríguez, F., Gómez, P., Gómez-Luna, M.J., Defoort, C., Gibney, M.J., Pérez-Jiménez, F., Roche, H.M. and López-Miranda, J. (2010) 'A low-fat, high-complex carbohydrate diet supplemented with long-chain (n-3) fatty acids alters the postprandial lipoprotein profile in patients with metabolic syndrome'. Journal of Nutrition, 140 (9):1595-1601.  
Professor Colin Scott
Halliday, S., Ilan, J. and Scott, C. (2011) 'The Public Management of Liability Risks'. Oxford Journal of Legal Studies, 31 (3):527-550.  
Brown, C. and Scott, C. (2011) 'Regulation, Public Law and Better Regulation'. European Public Law, 17 (3):467-484.  
Casey, D. and Scott, C. (2011) 'The Crystallization of Regulatory Norms'. Journal of Law and Society, 38 (1):76-95.  
Scott, C., Cafaggi, F. and Senden, L. (2011) 'The Conceptual and Constitutional Challenge of Transnational Private Regulation'. Journal of Law and Society, 38 (1):1-19.  
Professor Da-Wen Sun
Kamruzzaman, M., ElMasry, G., Da-Wen Sun, and Allen, P. (2011) 'Application of NIR Hyperspectral Imaging for Discrimination of Lamb Muscles'. Journal of Food Engineering, 104 (3):332-340.  
ElMasry, G., Iqbal, A., Da-Wen Sun, Allen, P. and Ward, P. (2011) 'Quality Classification of Cooked, Sliced Turkey Hams Using NIR Hyperspectral Imaging System'. Journal of Food Engineering, 103 (3):333-344.  
Kiani, H., Zhang, Z., Delgado A. and Da-Wen Sun (2011) 'Ultrasound Assisted Nucleation of Some Liquid and Solid Model Foods during Freezing'. Food Research International, 44 (9):2915-2921.  
Kiani, H. and Da-Wen Sun (2011) 'Water Crystallization and its Importance to Freezing of Foods: A Review'. Trends in Food Science & Technology, 22 (8):407-426.  
Weeranantanaphan, J., Downey, G., Allen, P. and Da-Wen Sun (2011) 'A Review of Near Infrared Spectroscopy in Muscle Food Analysis: 2005-2010'. Journal of Near Infrared Spectroscopy, 19 (2):61-104.  
Iqbal, A., Valous, N.A., Da-Wen Sun and Allen, P. (2011) 'Parsimonious Classification of Binary Lacunarity Data Computed from Food Surface Images Using Kernel Principal Component Analysis and Artificial Neural Networks'. Meat Science, 87 (2):107-114.  
Jackman, P., Da-Wen Sun and Allen, P. (2011) 'Recent Advances in the Use of Computer Vision Technology in the Quality Assessment of Fresh Meats'. Trends in Food Science & Technology, 22 (4):185-197.  
Costa, C., Antonucci, F., Pallottino, F., Aguzzi, J., Da-Wen Sun and Menesatti, P. (2011) 'Shape Analysis of Agricultural Products: A Review of Recent Research Advances and Potential Application to Computer Vision'. Food and Bioprocess Technology, 4 (5):673-692.  
ElMasry, G., Da-Wen Sun and Allen, P. (2011) 'Non-Destructive Determination of Water-Holding Capacity in Fresh Beef by using NIR Hyperspectral Imaging'. Food Research International, 44 (9):2624-2633.  
Zhou, X.L., Al Naib, A., Da-Wen Sun and Lonergan, P. (2010) 'Bovine Oocyte Vitrification Using the Cryotop Method: Effect of Cumulus Cells and Vitrification Protocol on Survival and Subsequent Development'. Cryobiology, 61 (1):66-72.  
Valous, N. A., Drakakis K. and Da-Wen Sun (2010) 'Detecting Fractal Power-law Long-range Dependence in Pre-sliced Cooked Pork Ham Surface Intensity Patterns Using Detrended Fluctuation Analysis'. Meat Science, 86 (2):289-297.  
Norton, T., Grant, J., Fallon R. and Da-Wen Sun (2010) 'Improving the Representation of Thermal Boundary Conditions of Livestock during CFD Modelling of the Indoor Environment'. Computers and Electronics in Agriculture, 73 (1):17-36.  
Professor Torres Sweeney
Varley, P.F., Sweeney, T., Ryan, M.T. and O'Doherty, J.V. (2011) 'The effect of phosphorus restriction during the weaner-grower phase on compensatory growth, serum osteocalcin and bone mineralization in gilts'. Livestock Science, 135 (2-3):282-288.  
Smith, A.G., O'Doherty, J.V., Reilly, P., Ryan, M.T., Bahar, B. and Sweeney, T. (2011) 'The effects of laminarin derived from Laminaria digitata on measurements of gut health: selected bacterial populations, intestinal fermentation, mucin gene expression and cytokine gene expression in the pig'. British Journal of Nutrition, 105 (5):1-9.  
Bahar, B., O'Halloran, F., Callanan, M.J., McParland, S., Giblin, L. and Sweeney, T. (2011) 'Bovine lactoferrin (LTF) gene promoter haplotypes have different basal transcriptional activities'. Animal Genetics, 42 (3):270-279.  
O'Shea, C.J., Sweeney, T., Lynch, M.B., Callan, J.J. and O'Doherty, J.V. (2011) 'Modification of selected bacteria and markers of protein fermentation in the distal gastrointestinal tract of pigs upon consumption of chitosan is accompanied by heightened manure odor emissions'. Journal of Animal Science, 89 (5):1366-1375.  
Bolton, D.J., Monaghan, A., Byrne, B., Fanning, S., Sweeney, T. and McDowell, D.A. (2011) 'Incidence and survival of non-O157 verocytotoxigenic Escherichia coli in soil'. Journal of Applied Microbiology, 111:484-490.  
Alam, T., Bahar, B., Waters, S.M., McGee, M., O'Doherty, J.V. and Sweeney, T. (2011) 'Functional characterisation of the bovine neuropeptide Y gene promoter and evaluation of the transcriptional activities of promoter haplotypes'. Molecular Biology Reports, PMID:21562764 .  
Hassan, M., Good, B., Hanrahan, J.P., Campion, D., Sayers, G., Mulcahy, G. and Sweeney, T. (2011) 'The dynamic influence of the DRB1*1101 allele on the resistance of sheep to experimental Teladorsagia circumcincta infection'. Veterinary Research, 42 (1):46.  
Hassan, M., Hanrahan, J.P., Good, B., Mulcahy, G. and Sweeney, T. (2011) 'A differential interplay between the expression of Th1/Th2/Treg related cytokine genes in Teladorsagia circumcincta infected DRB1*1101 carrier lambs'. Veterinary Research, 42 (1):45.  
Taraktsoglou, M., Szalabska, U., Magee, D.A., Browne, J.A., Sweeney, T., Gormley, E. and MacHugh, D.E. (2011) 'Transcriptional profiling of immune genes in bovine monocyte-derived macrophages exposed to bacterial antigens'. Veterinary Immunology and Immunopathology, 140 (1-2):130-139.  
Rohrle, F.T., Moloney, A.P., Black, A., Osorio, M.T., Sweeney, T., Schmidt, O. and Monahan, F.J. (2011) 'Alpha-Tocopherol stereoisomers in beef as an indicator of vitamin E supplementation in cattle diets'. Food Chemistry, 124 (3):935-940.  
Leonard, S.G., Sweeney, T., Bahar, B., Lynch, B.P. and O'Doherty, J.V. (2011) 'Effect of dietary seaweed extracts and fish oil supplementation in sows on performance, intestinal microflora, intestinal morphology, volatile fatty acid concentrations and immune status of weaned pigs'. British Journal of Nutrition, 105:549-560.  
Leonard, S.G., Sweeney, T., Bahar, B., Lynch, B.P. and O'Doherty, J.V. (2011) 'Effects of dietary seaweed extract supplementation in sows and post-weaned pigs on performance, intestinal morphology, intestinal microflora and immune status'. British Journal of Nutrition, 106:688-699.  
Pang, W.Y., Earley, B., Murray, M., Sweeney, T., Gath, V. and Crowe, M.A. (2011) 'Banding or Burdizzo castration and carprofen administration on peripheral leukocyte inflammatory cytokine transcripts'. Research in Veterinary Science, 90:127-132.  
Sweeney, T., Dillon, S., Fanning, J., Egan, J., O'Shea, C.J., Figat, S., Gutierrez, J.J.M., Mannion, C., Leonard, F. and O'Doherty, J.V. (2011) 'Evaluation of seaweed-derived polysaccharides on indices of gastrointestinal fermentation and selected populations of microbiota in newly weaned pigs challenged with Salmonella Typhimurium'. Animal Feed Science and Technology, 165 (1-2):85-94.  
O'Shea, C.J., Sweeney, T., Lynch, M.B., Gahan, D.A., Flynn, B.A. and O'Doherty, J.V. (2011) 'The effect of introducing purified Beta-glucans to a wheat-based diet on total tract digestibility and gaseous manure emissions from pigs as compared with consumption of a beta-glucan-rich, barley-based diet'. Animal Feed Science and Technology, 165 (1-2):95-104.  
Bahar, B., O'Doherty, J.V. and Sweeney, T. (2011) 'A potential role of IL-6 in the chito-oligosaccharide-mediated inhibition of adipogenesis'. British Journal of Nutrition, 106 (8):1142-1153.  
O'Shea, C.J., Lynch, M.B., Sweeney, T., Gahan, D.A., Callan, J.J. and O'Doherty, J.V. (2011) 'Comparison of a wheat-based diet supplemented with purified β-glucans, with an oat-based diet on nutrient digestibility, nitrogen utilization, distal gastrointestinal tract composition, and manure odor and ammonia emissions from finishing pigs'. Journal of Animal Science, 89:438-447.  
Aslan, O., Sweeney, T., Mullen, A.M. and Hamill, R.M. (2010) 'Regulatory polymorphisms in the bovine Ankyrin 1 gene promoter are associated with tenderness and intramuscular fat content'. BMC Genetics, 11:111.  
Magee, D.A., Berkowicz, E.W., Sikora, K.M., Sweeney, T., Kenny, D.A., Kelly, A.K., Evans, R.D., Wickham, B.W., Bradley, D.G., Spillane, C. and MacHugh, D.E. (2010) 'High concordance of bovine single nucleotide polymorphism genotypes generated using two independent genotyping strategies'. Animal Biotechnology, 21 (4):257-262.  
Reardon, W., Mullen, A. M., Sweeney, T. and Hamill, R. M. (2010) 'Association of polymorphisms in candidate genes with colour, water-holding capacity, and composition traits in bovine M. longissimus and M. semimembranosus'. Meat Science, 86 (22):270-275270.  
Kelly, A.K., McGee, M., Crews, D.H., Sweeney, T., Boland, T.M. and Kenny, D.A. (2010) 'Repeatability of feed efficiency, carcass ultrasound, feeding behavior, and blood metabolic variables in finishing heifers divergently selected for residual feed intake'. Journal of Animal Science, 88 (10):3214-3225.  
Leonard, S.G., Sweeney, T., Bahar, B., Lynch, B.P. and O'Doherty, J.V. (2010) 'Effect of maternal fish oil and seaweed extract supplementation on colostrum and milk composition, humoral immune response, and performance of suckled piglets'. Journal of Animal Science, 88 (99):2988-2997.  
Professor Shane Ward
Connolly, J., Holden, N.M., Connolly, J., Seaquist, J.W. and Ward, S.W. (2011) 'Detecting recent disturbance on Montane blanket bogs in the Wicklow Mountains, Ireland using the MODIS enhanced vegetation index'. International Journal of Remote Sensing, 32 (9):2377-2393.  
Dr Paul Whyte
Caminiti, I.M., Palgan, I., Noci, F., Munoz, A., Whyte, P., Cronin, D.A., Morgan, D.J. and Lyng, J.G. (2011) 'The effect of pulsed electric fields (PEF) in combination with high intensity light pulses (HILP) on Escherichia coli inactivation and quality attributes in apple juice'. Innovative Food Science and Emerging Technologies, 12:118-123.  
Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A., Fanning, S. and Whyte, P. (2011) 'Efficacy of high intensity pulsed light for the microbiological decontamination of poultry, associated packaging and contact surfaces'. Foodborne Pathogens and Disease, 8:109-117.  
Acke, E., Carroll, C., O’Leary, A., McGill, K., Kelly, L., Lawlor, A., Madden, R.H., Moran, L., Scates, P., McNamara, E., Moore, J.E., Jones, B.R., Fanning, S. and Whyte, P. (2011) 'Genotypic characterisation and cluster analysis of Campylobacter jejuni isolates from domestic pets, human clinical cases and retail food'. Irish Veterinary Journal, 64.  
Munoz, A., Palgan, I., Noci, F., Morgan, D.J., Cronin, D.A., Whyte, P. and Lyng, J.G. (2011) 'Combinations of high intensity light pulses and thermosonication for the inactivation of Escherichia coli in orange juice'. Food Microbiology, 28:1200-1204.  
O’Leary, A., Whyte, P., Madden, R.H., Cormican, M., Moore, J.E., McNamara, E., McGill, K., Kelly, L., Cowley, D., Moran, L., Scates, P., Collins, J.D. and Carroll, C.V. (2011) 'Pulsed Field Gel Electrophoresis typing of human and retail foodstuff campylobacters: an Irish perspective'. Food Microbiology, 28:426-433.  
Haughton, P.N., Lyng, J., Cronin, D.A., Morgan, D.J., Fanning, S. and Whyte, P. (2011) 'Efficacy of UV light treatment for the microbiological decontamination of chicken, associated packaging and contact surfaces'. Journal of Food Protection, 74:565-572.  
Palgan, I., Caminiti, I.M., Munoz, A., Noci, F., Whyte, P., Morgan, D.J., Cronin, D.A. and Lyng, J.G. (2011) 'Effectiveness of High Intensity Light Pulse (HILP) treatments for the control of Escherichia coli and Listeria innocua in apple juice, orange juice and milk'. Food Microbiology, 28:14-20.  
Caminiti, I.M., Noci, F., Munoz, A., Whyte, P., Morgan, D.J., Cronin, D.A. and Lyng, J.G. (2011) 'Impact of selected combinations of non-thermal processing technologies on the quality of an apple and cranberry juice blend'. Food Chemistry, 124:1387-1392.  
Beekhuis-Gibbon, L., O’Grady, L., More, S.J., Whyte, P. and Doherty, M.L. (2011) 'A HACCP-based approach to mastitis control in dairy herds. Part 1: Development'. Irish Veterinary Journal, 64 (2).  
Beekhuis-Gibbon, L., Devitt, C., O’Grady, L., More, S.J., Whyte, P., Redmond, B. and Doherty, M.L. (2011) 'A HACCP-based approach to mastitis control in dairy herds. Part 2: Implementation and evaluation'. Irish Veterinary Journal, 64 (7).  
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Other Journals
Professor Nick Holden
O’Connell, J., Connolly, J. and Holden, N. M. (2011) 'Cross calibration of satellite based multispectral data over peatlands' Biosystems Engineering Research Review.  
Donnelly-Swift, R., Connolly, J. and Holden, N. M. (2011) 'Remote Sensing as a tool to monitor white clover growth on farms' Biosystems Engineering Research Review.  
Professor Joseph Andrew McMahon
McMahon, J.A. (2011) 'The European Union's Common Agricultural Policy in 2020' Irish Environment.  
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Conference Publications
Dr Lorraine Brennan
Monahan F.J., Moloney, A.P., Osorio, M.T., Röhrle, F., Schmidt, O. and Brennan, L. (2011) Authentication of grass-fed beef using bovine muscle, hair or urine Food Integrity and Traceability Conference, Belfast, 33  
Dr Enda Cummins
Curran, T., Doyle, C., Cummins, E., McDonnell, K. and Holden, N. (2011) Developing Problem Based Learning Initiatives in Biosystems Engineering FACiLiTATE, Dublin,  
Labite, H. and Cummins, E. (2011) Risk ranking of pesticides used in Irish agriculture The 21st Irish Environmental Researchers Colloquium, University College Cork, Ireland, 124  
Pavlis, M. and Cummins, E. (2011) Assessment of groundwater vulnerability to pollution in Ireland based on the COST-620 pan-European approach The 21st Irish Envoronmental Researchers Colloquium, University College Cork, Ireland, 48  
Harris, S. and Cummins, E. (2011) Risk ranking of antimicrobial residues in the environment The 21st Irish Environmental Researchers Colloquium, University College Cork, Ireland, 68  
Tiwari, U. and Cummins, E. (2011) A farm-level model to predict quercetin levels during the cultivation of onions Food Research Conference, University College Cork, Ireland, A37  
Cushen, M., Cummins, E., Kerry, J., Morris, M., Cruz-Romero, M. and Burke A. (2011) Nanoparticle migration and exposure assessment from food packaging Food Research Conference, University College Cork, Ireland, A10  
Tiwari B., O'Donnell, C., Tiwari, U., Cummins, E. and Cullen, P.J. (2010) Shelf-life prediction of pasteurised orange juice. In: Starovicova M eds. EFFoST, Burlington Hotel, Upper Leeson Street, Dublin 4, P154  
Professor Séamus Fanning
Solomon, K., Fanning, S., Murray, S., Scott, L., McDermott, S., Drudy, D., Martin, A., O’Donoghue, C., Skally, M., Burns K., Fenelon, L., Fitzpatrick, F. and Kyne, L. (2010) sub-type diversity of clinical isolates of Clostridium difficile ribotypes 027 and 078 3rd International Clostridium difficile Symposium,  
Martin, A.J., Solomon, K., O’Donoghue, C., Fenelon, L., Fitzpatrick, F., Fanning, S., Murray, S., Chen, X., Kelly, C.P. and Kyne, L. (2010) Clinical outcomes and immune response associated with Clostridium difficile ribotype 027 infection 3rd International Clostridium difficile symposium,  
Professor Nick Holden
Connolly, J. and Holden, N.M. (2011) Peatlands and drainage: using object oriented methods to map peatland drains Conference of Irish Geographers, MIL, Limerick, Ireland,  
Curran T., Doyle C., Cummins E., McDonnell K. and Holden N. (2011) Developing Problem Based Learning Initiatives in Biosystems Engineering FACiLiTATE, Dublin,  
O'Rourke, S.M. and Holden, N.M. (2011) The potential of visible-near infrared hyperspectral imaging for determining soil organic matter and carbon fractions in forest top soils European Geosciences Union General Assembly 2011, 3 - 8th April, Vienna, Austria,  
O'Rourke, S.M. and Holden, N.M. (2011) The potential of near infrared lab based hyperspectral imaging for the determination of geochemical properties in Irish soils The 15th International Conference on Near Infrared Spectroscopy, 13 - 20th May, Cape Town, South Africa,  
Connolly, J. and Holden, N.M. (2010) An Object Oriented approach for mapping peatland disturbance RSPSoc 2010,  
O’Connell, J., Holden, N.M. and Connolly, J. (2010) LAI in the quantification of vegetation disturbance in Irish peatlands RSPSoc 2010,  
Professor Cecily Kelleher
McGorrian, C., Frazer, K. and Kelleher, C. (on behalf of AITHS Study Team) (2010) Do Irish Travellers Pose A Paradox In Terms Of Healthcare Access And Engagement? Faculty of Public Health Medicine, Winter Scientific Meeting, Dublin,  
Jackson, A.D., Daly, L., Kelleher, C., Fletcher, G., Harrington, M., Zhou, S. and Fitzpatrick, P. (2010) Factors associated with poor pulmonary function in cystic fibrosis adults in the Republic of Ireland: a cross-sectional analysis of registry data The Irish Thoracic Society Annual Scientific Meeting, 2010, S464  
Kelleher, C. (2010) Diet, Diabetes and Obesity - Research Progress of HRB UCC/UCD Work Programme 3rd West of Ireland Integrated Diabetes Care Conference,  
Dr James Lyng
Whyte, P., Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A. and Fanning, S. (2011) Reducing Campylobacter in plant using novel physical interventions FIRM Relay Dissemination conference: Strategies to control Campylobacter in poultry,  
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S. and Whyte, P. (2011) (ii) Effect of a commercially available water acidification product (PWT) on the survival of Campylobacter spp. in water and broiler cecal contents 16th International Workshop on Campylobacter, Helicobacter and Related Organisms, Vancouver, Canada,  
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S. and Whyte, P. (2011) (i) Combination of ultrasonication or thermosonication and ultraviolet light for the decontamination of raw chicken 16th International Workshop on Campylobacter, Helicobacter and Related Organisms, Vancouver, Canada,  
Dr Kevin McDonnell
Curran T., Doyle C., Cummins E., McDonnell K. and Holden N. (2011) Developing Problem Based Learning Initiatives in Biosystems Engineering FACiLiTATE, Dublin,  
Fagan, C.C., Everard, C.D. and McDonnell, K. (2011) Prediction of short rotation coppice willow and Miscanthus composition using NIR spectroscopy European Biomass Conference and Expo, Berlin, Germany,  
Fagan, C.C., Everard, C.D. and McDonnell, K. (2011) Prediction of the calorific value of bioenergy crops using visible-near-infrared spectroscopy CAC-2010: 12th International Conference on Chemometrics in Analytical Chemistry, Antwerp, Belgium,  
Farrelly, D., McDonnell, K. and Fagan, C.C. (2011) Farrelly, D., McDonnell, K., Fagan, C.C. Effect of carbon dioxide concentration and temperature on the CO2 mitigation potential of micro-algae ASABE Annual International Meeting 2011, Kentucky USA,  
Everard, C.D., McDonnell, K. and Fagan, C.C. (2011) Determination of Calorific Values of Biomass using Hyperspectral Imaging Techniques ASABE Annual International Meeting 2011, Kentucky USA,  
Professor Frank Monahan
Luciano, G., Moloney, A.P., Priolo, A., Röhrle, F.T., Vasta, V., Biondi, L., L?pez-Andrés, P., Grasso, S. and Monahan, F.J. (2011) The balance between vitamin E and highly peroxidizable fatty acids in muscle and the oxidative stability of beef from cattle grown on forage- or concentrate-based rations 57th International Congress of Meat Science and Technology, Ghent, Belgium,  
Harrison, S., Schmidt, O., Monahan, F.J., Bahar, B. and Moloney, A.P. (2011) Using animal diet switch experiments to improve meat traceability Food Integrity and Traceability Conference, Belfast, 37  
Monahan, F.J., Moloney, A.P., Osorio, M.T., Röhrle, F., Schmidt, O. and Brennan, L. (2011) Authentication of grass-fed beef using bovine muscle, hair or urine Food Integrity and Traceability Conference, Belfast, 33  
Contini, C., Katsikogianni, M.G., O’Neill, F.T., O’Sullivan, M., Dowling, D.P. and Monahan, F.J. (2011) Development of active packaging containing natural antioxidants 11th International Congress on Engineering and Food, Athens, Greece, 1001 - 1002  
Professor Colm O'Donnell
O'Donnell, C.P. (2011) Benefits and Challenges of PAT in the Dairy Industry IFPAC Annual Meeting, Jan. 17-21, 2011 Baltimore, MD, USA,  
Professor Dolores O'Riordan
O'Neill, G., Jacquier, J.C., O'Sullivan, M. and O'Riordan, E.D. (2011) (2011) Encapsulation of amino acids and peptides in cold set whey protein microspheres 2011 EFFoST Annual Meeting Berlin, , 09-NOV-11 - 11-NOV-11,  
Sherry, F.A., Ellis, A., Jacquier, J.C., O'Sullivan, M., O'Riordan, E.D. and Fanning, S. (2010) Effect of prebiotic strains on pathogens in companion animals EFFoST Annual Meeting 2010, Dublin,  
Fox, A., Ellis, A., O'Riordan, E.D., O'Sullivan, M. and Jacquier J.C. (2010) Copper encapsulation for trace mineral fortification of food 2011 EFFoST Annual Meeting 10/11,  
McKernan, A., Ellis, A., Jacquier, J.C., O'Sullivan, M. and O'Riordan, E.D. (2010) Microencapsulation of Feed Enzymes for Increased Thermal Stability 2010 EFFoST Annual Meeting, Dublin,  
Mr Mick O'Sullivan
Contini, C., Katsikogianni, M.G., O’Neill, F.T., O’Sullivan, M., Dowling, D.P. and Monahan, F.J. (2011) Development of active packaging containing natural antioxidants 11th International Congress on Engineering and Food, Athens, 1001 - 1002  
Sherry, F.A., Ellis, A., Jacquier, J.C., O'Sullivan, M., O'Riordan, E.D. and Fanning, S. (2010) Effect of prebiotic strains on pathogens in companion animals EFFoST Annual Meeting 2010, Dublin,  
Fox, A., Ellis, A., O'Riordan, E.D., O'Sullivan, M. and Jacquier J.C. (2010) Copper encapsulation for trace mineral fortification of food 2011 EFFoST Annual Meeting 10/11,  
McKernan, A., Ellis, A., Jacquier, J.C., O'Sullivan, M. and O'Riordan, E.D. (2010) Microencapsulation of Feed Enzymes for Increased Thermal Stability 2010 EFFoST Annual Meeting, Dublin,  
Professor Da-Wen Sun
Da-Wen Sun (2011) Using Hyperspectral Imaging Technique to Evaluate and Inspect Quality and Safety of Agricultural and Food Products CIGR International Symposium 2011 on Sustainable Bioproduction, Water, Energy and Food (WEF 2011) (Keynote speech), Tokyo, Japan,  
Barbin, D.F., Elmasry, G., Da-Wen Sun and Allen, P. (2011) Prediction of Pork Drip Loss Using NIR Hyperspectral Imaging and Partial Least Squares Regression 6th International CIGR Technical Symposium on Towards a Sustainable Food Chain, Nantes, France,  
ElMasry, G., Da-Wen Sun and Allen, P. (2011) Determination of Drip Loss in Beef by NIR Hyperspectral Imaging and Multivariate Analysis 11th International Congress on Engineering and Food (ICEF 11), Athens, Greece,  
Wei, X., Wu, D., Huang, L., He, Y. and Da-Wen Sun (2011) Bruise Detection of Intact Kiwifruit Using Hyperspectral Imaging Technique 6th International CIGR Technical Symposium on Towards a Sustainable Food Chain, Nantes, France,  
Iqbal, A., Valous N.A., and Da-Wen Sun (2011) Classification of Lacunarity Datasets Computed from Slice Images of Three Pork Ham Qualities, Using Kernel PCA and a Multilayer Perceptron 6th International CIGR Technical Symposium on Towards a Sustainable Food Chain, Nantes, France,  
Valous, N.A., Drakakis, K. and Da-Wen Sun (2011) Long-range Correlations in Pork Ham Surface Images Using First-order Detrended Fluctuation Analysis 11th International Congress on Engineering and Food (ICEF 11), Athens, Greece,  
Kiani, H., Zhang, Z., Delgado, A. and Da-Wen Sun (2011) Ultrasound Assisted Nucleation of Water During Freezing 11th International Congress on Engineering and Food (ICEF 11), Athens, Greece,  
Da-Wen Sun (2011) Developments of Novel Freezing Technologies for Improving Frozen Food Quality Functional Food and Health International Symposium (Keynote speech), Nanjing, China,  
Da-Wen Sun (2011) Hyperspectral Imaging Technology: A Non-Destructive Tool for Food Quality and Safety Evaluation and Inspection 11th International Congress on Engineering and Food (ICEF 11) (Keynote speech), Athens, Greece,  
ElMasry, G., Da-Wen Sun and Allen, P. (2011) NIR Hyperspectral Imaging for Non-destructive Determination of Beef Quality Attributes 6th International CIGR Technical Symposium on Towards a Sustainable Food Chain, Nantes, France,  
Barbin, D.F., ElMasry, G., Da-Wen Sun and Allen, P. (2011) Detection of Pork Freshness Using NIR Hyperspectral Imaging 11th International Congress on Engineering and Food (ICEF 11), Athens, Greece,  
Feng, C., Zhang, Z., Drummond, L. and Da-Wen Sun, (2011) Cooling of Cooked Carrot Cubes of Different Sizes with Three Cooling Methods 40th Annual UCC Food Research Conference, Cork, Ireland,  
Wu, D., Cao, F., Chen, X., He, Y. and Da-Wen Sun (2011) Rapid Quantitative Determination of EPA and DHA in Fish Oil by ATR-FTIR with Hybrid Chemometrics 6th International CIGR Technical Symposium on Towards a Sustainable Food Chain, Nantes, France,  
Kamruzzaman, M., Elmasry, G., Da-Wen Sun and Allen, P. (2011) Predicting Some Quality Attributes of Lamb Muscles by NIR Hyperspectral Imaging 6th International CIGR Technical Symposium on Towards a Sustainable Food Chain, Nantes, France,  
Da-Wen Sun (2011) Non-Destructive Quality and Safety Evaluation and Inspection for Agricultural and Food Products by Hyperspectral Imaging Technology 2011 International Conference on Agricultural Engineering New Technology (ICAE2011) (Plenary lecture), Zibo, China,  
Morsy, N., Aleixos, N., Prats-Montalbán, J., Blasco, J., ElMasry, G., Da-Wen Sun and Allen, P. (2011) Classification of Chicken Ham Qualities by Computer Vision and Imaging Spectroscopy 6th International CIGR Technical Symposium on Towards a Sustainable Food Chain, Nantes, France,  
Morsy, N., Blasco, J., Alixos, N., ElMasry, G., Da-Wen Sun and Allen, P. (2010) Potential of Imaging Spectroscopy for Classification of Meat Products IASIM-10, Dublin, Ireland,  
Da-Wen Sun (2010) Non-Destructive Food Quality and Safety Evaluation and Inspection by Hyperspectral Imaging Technology 4th International Conference on Computer and Computing Technologies in Agriculture (Keynote speech), Nanchang, China,  
Barbina, D.F., ElMasry, G., Da-Wen Sun and Allen, P. (2010) Classification of Pork Quality Grades by Hyperspectral Imaging Technique IASIM-10, Dublin, Ireland,  
ElMasry, G., Da-Wen Sun and Allen, P. (2010) Prediction of Water-Holding Capacity in Beef by NIR Hyperspectral Imaging IASIM-10, Dublin, Ireland,  
Kamruzzaman, M., ElMasry, G., Da-Wen Sun and Allen, P. (2010) Applicability of NIR Hyperspectral Imaging in Classification of Lamb Muscles IASIM-10, Dublin, Ireland,  
Dr Paul Whyte
Whyte, P., Haughton, P.N., Lyng, J.G., Morgan, D.J., Cronin, D.A. and Fanning, S. (2011) Reducing Campylobacter in plant using novel physical interventions FIRM Relay Dissemination conference: Strategies to control Campylobacter in poultry,  
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S. and Whyte, P. (2011) (ii) Effect of a commercially available water acidification product (PWT) on the survival of Campylobacter spp. in water and broiler cecal contents 16th International Workshop on Campylobacter, Helicobacter and Related Organisms, Vancouver, Canada,  
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P. (2011) (i) Combination of ultrasonication or thermosonication and ultraviolet light for the decontamination of raw chicken 16th International Workshop on Campylobacter, Helicobacter and Related Organisms, Vancouver, Canada,  
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Published Reports
Professor Cecily Kelleher
Abdalla, Safa; Cronin, Fran; Daly, Leslie (Co-PI); Drummond, Anne; Fitzpatrick, Patricia; Frazier, Kate; Hamid, Noor Aman; Kelleher, Cecily C. (PI); Kelly, C; Kilroe, Jean; Lotya, Juzer; McGorrian, Catherine; Moore, Ronnie G. (Co-PI); Murnane, Sinéad; Nic Chárthaigh, Róisín; O'Mahony, Deirdre; O'Shea, Bríd (Admin support); Quirke, Brigid; Staines, Anthony (Co-PI); Staines, David; Sweeney, Mary Rose; Turner, Jill; Ward, Aileen; Whelan, Jane (2010); All Ireland Traveller Health Study Technical Report 3. (214 pages). Department of Health and Children, Dublin.  
   
Abdalla, Safa; Cronin, Fran; Daly, Leslie (Co-PI); Drummond, Anne; Fitzpatrick, Patricia; Frazier, Kate; Hamid, Noor Aman; Kelleher, Cecily C. (PI); Kelly, C; Kilroe, Jean; Lotya, Juzer; McGorrian, Catherine; Moore, Ronnie G. (Co-PI); Murnane, Sinéad; Nic Chárthaigh, Róisín; O’Mahony Deirdre; O’Shea, Bríd (Admin support); Quirke, Brigid; Staines, Anthony (Co-PI); Staines, David; Sweeney, Mary Rose; Turner, Jill; Ward, Aileen; Whelan, Jane; (2010) All Ireland Traveller Health Study Technical Report 2. Department of Health and Children, Dublin.  
Abdalla, Safa; Cronin, Fran; Daly, Leslie (Co-PI); Drummond, Anne; Fitzpatrick, Patricia; Frazier, Kate; Hamid, Noor Aman; Kelleher, Cecily C. (PI); Kelly, C; Kilroe, Jean; Lotya, Juzer; McGorrian, Catherine; Moore, Ronnie G. (Co-PI); Murnane, Sinéad; Nic Chárthaigh, Róisín; O'Mahony, Deirdre; O'Shea, Bríd (Admin support); Quirke, Brigid; Staines, Anthony (Co-PI); Staines, David; Sweeney, Mary Rose; Turner, Jill; Ward, Aileen; Whelan, Jane; (2010) All Ireland Traveller Health Study Technical Report 2. (198 pages). Dept of Health and Children, Dublin.  
Abdalla, Safa; Cronin, Fran; Daly, Leslie (Co-PI); Drummond, Anne; Fitzpatrick, Patricia; Frazier, Kate; Hamid, Noor Aman; Kelleher, Cecily C. (PI); Kelly, C; Kilroe, Jean; Lotya, Juzer; McGorrian, Catherine; Moore, Ronnie G. (Co-PI); Murnane, Sinéad; Nic Chárthaigh, Róisín; O'Mahony, Deirdre; O'Shea, Bríd (Admin support); Quirke, Brigid; Staines, Anthony (Co-PI); Staines, David; Sweeney, Mary Rose; Turner, Jill; Ward, Aileen; Whelan, Jane; (2010) All Ireland Traveller Health Study Technical Report 1. (260 pages). Dept of Health and Children, Dublin.  
Professor Colin Scott
Ciara Brown and Colin Scott (2010) Regulatory Capacity and Networked Governance. UCD Geary Institute, Dublin.  
Ciara Brown and Colin Scott (2010) Regulation in Ireland: History, Structure, Style and Reform. UCD Geary Institute, Dublin.  
Dr Paul Whyte
Food Safety Authority of Ireland (2011) Recommendations for a practical control programme for Campylobacter in the poultry production and slaughter chain. Food Safety Authority of Ireland, Dublin.  
FSAI (2011) The prevention of verocytotoxigenic Escherichia coli (VTEC) infection: A shared responsibility.  2nd Edition. FSAI, Dublin.  
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Other Publications
Professor Colin Scott
Niamh Hardiman, Muiris MacCarthaigh and Colin Scott (2010) Irish State Administration Database. Dublin: Software.  
Dr Paul Whyte
Whyte, P., Haughton, P., Lyng and Cronin, D. (2011) Shedding light on Campylobacter in chicken. Dublin: Newsletter.  
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