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Poppy Flower. Image by Naheda Alkazemi.

Poppy Flower. Image by Naheda Alkazemi.

UCD Conway Institute

UCD Conway Institute - Research Publications 2012/13

Below is the list of research publications for the UCD Conway Institute in the academic year 2012/13.




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Books

Professor Ronan O'Connell
Willaims NS, Bulstrode C, O'Connell PR (2013) Bailey and Love's Short Practice of Surgery. Boca Raton: CRC Press.  


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Book Chapters

Professor Mohamed Al-Rubeai
Browne S. M. and Al-Rubeai M. (2013) 'Blood cell bioprocessing: The haematopoietic system and current status of in-vitro production of red blood cells' In: Al-Rubeai M. and Naciri M (eds). Stem Cells and Cell Therapy. Dordrecht: Springer.  
Professor Mark Crowe
Mullen, MP; Cooke, DJ; Crowe, MA (2013) 'Structural and functional roles of FSH and LH as glycoproteins regulating reproduction in mammalian species' In: Jorge Vizcarra (eds). Gonadotropin. Rijeka, Croatia: In Tech. , pp.155-180 Available Online  
Crowe, MA; Mullen, MP (2013) 'Regulation and function of gonadotropins throughout the bovine oestrous cycle' In: Jorge Vizcarra (eds). Gonadotropin. Rijeka, Croatia: In Tech. , pp.143-154 Available Online  
Crowe, MA; Mullen, MP (2013) 'Relative roles of FSH and LH in stimulation of effective follicular responses in cattle' In: Jorge Vizcarra (eds). Gonadotropin. Rijeka, Croatia: In Tech. , pp.125-142 Available Online  
Crowe, MA; Mullen, MP (2013) 'Regulation and differential secretion of gonadotropins during post partum recovery of reproductive function in beef and dairy cows' In: Jorge Vizcarra (eds). Gonadotropin. Rijeka, Croatia: In Tech. , pp.107-124 Available Online  
Professor Michael Duffy
MJ Duffy, M Mullooly, J Crown, PM McGowan (2013) 'The ADAMs: new Therapeutic Targets for Cancer' In: YH Bae, RJ Mrsny, K Park (eds). Cancer Targeted Drug Delivery. New York: Springer.  
Duffy MJ (2012) 'Use of Tumor markers in the Detection and Management of Patients with Colorectal Cancer' In: C H Cho and J Yu (eds). From Inflammation to Cancer: Advances in Diagnosis and Therapy for Gastrointestinal and Hepatological Disease. New Jersey, London, Singapore: World Scientific. , pp.315-330  
Professor Suzi Jarvis
S. P. Jarvis, G. Kaggwa and K. Sheikh (2013) 'Liquid structure at the solid-liquid interface' In: T. Ondarcuhu and J.-P. Aimé (eds). Nanoscale Liquid Interfaces: Wetting, Patterning and Force Microscopy at the Nanoscale. Singapore: Pan Stanford Publishing.  
Jarvis, S.P. and Mostaert, A.S. (2012) 'The fine line between pathology and physiology' In: Jarvis, S.P. and Mostaert, A.S (eds). The Functional Fold. Amyloid Structures in Nature. Singapore: Pan Stanford Publishing. , pp.159-166 Available Online  
B. Rodriguez and S. P. Jarvis (2012) 'Atomic force microscopy: An enabling nanotechnology for diabetes research' In: Lan-Anh Le, Ross J. Hunter and Victor R. Preedy (eds). Nanotechnology and Nanomedicine in Diabetes. USA: Science Publishers.  
Mostaert, A.S. and Jarvis, S.P. (2012) 'Functional amyloid in natural adhesives' In: Jarvis, S.P. and Mostaert, A.S (eds). The Functional Fold. Amyloid Structures in Nature. Singapore: Pan Stanford Publishing. , pp.131-146 Available Online  
Professor Gil Lee
Stoeckli ET, D Kilinc, B Kunz, S Kunz, GU Lee, E Martines, C Rader and D Sute (2013) 'Analysis of cell-cell contact mediated by Ig superfamily cell adhesion molecules' In: Juan S. Bonifacino (eds). Curr Protoc Cell Biol. NY: Wiley.  
Gil U Lee, Krasimir Ivanov, Devrim Kilinc, Elena Martines, Agata Blasiak, Peng Li, and Michael J. Higgins (2013) 'Characterization of inter- and intramolecular interactions with the atomic force microscope' In: Corey Neu and Guy Genin (eds). CRC Handbook of Imaging in Biological Mechanics. Oxford, UK: Taylor and Francis.  
Professor David MacHugh
Hill EW, Katz LM, MacHugh DE; (2013) 'Genomics of Performance' In: Hill EW, Katz LM, MacHugh DE; (eds). Equine Genomics. Hoboken, NJ: Wiley-Blackwell. , pp.265-284  
Dr Gethin McBean
McBean, G.J. (2013) 'The thiol redox system in glioma biology: clinical target and significance in resistance to glioma therapy' In: Wiranowska, M. and Vrionis, F.D., Eds (eds). Gliomas: symptoms, diagnosis and treatment options. New York: Nova Science Publishers. , pp.321-340  
McBean, G.J. (2012) 'Astrocytes and the regulation of cerebral cysteine/cystine redox potential: implications for cysteine neurotoxicity' In: Chorkina, F.V. and Karatev, A.I., Eds (eds). Cysteine: biosynthesis, chemical structure and toxicity. New York: Nova Science Publishers. , pp.135-153  
Dr Anika Mostaert
Higgins, L. and Mostaert, A. S. (2013) 'Qualitative and Quantitative Study of Spiny Starfish (Marthasterias glacialis) Footprints Using Atomic Force Microscopy' In: Santos R., Aldred N., Gorb S. and Flammang P (eds). Biological and Biomimetic Adhesives. Challenges and Opportunities. London, UK: RSC Publishing. , pp.26-37  
Mostaert, A.S. and Jarvis, S.P. (2012) 'Functional amyloid in natural adhesives' In: Jarvis, S.P. and Mostaert, A.S (eds). The Functional Fold. Amyloid Structures in Nature. Singapore: Pan Stanford Publishing. , pp.131-146 Available Online  
Jarvis, S.P. and Mostaert, A.S. (2012) 'The fine line between pathology and physiology' In: Jarvis, S.P. and Mostaert, A.S (eds). The Functional Fold. Amyloid Structures in Nature. Singapore: Pan Stanford Publishing. , pp.159-166 Available Online  
Professor Ron Pinhasi
Pinhasi R (2013) 'Holocene Migration: Europe' In: Pinhasi R (eds). The Encyclopedia of Global Human Migration. New York: Wiley-Liss.  
Pinhasi, R; Heyer, E (2013) 'Central Asia: Archaeology and genetics' In: Ness, I; Bellwood, P (eds). The Encyclopedia of Global Human Migration. New York: Wiley-Liss.  
Professor William Powderly
WG Powderly (2012) 'Cryptococcosis' In: D. Warrell, T. Cox, J. Firth, E. Torok (eds). Oxford Textbook of Infectious and Tropical Diseases. Oxford: Oxford University Press. , pp.639-641  
Professor Ciaran Regan
Regan CM (2013) 'The Addicted Self: A Neuroscientific Perspective' In: Regan CM (eds). Intoxication and Society: Problematic Pleasures of Drugs and Alcohol. London: Palgrave MacMillan.  
Herring J, Regan CM, Weinberg D, Withington P (2013) 'Starting the conversation' In: Herring J, Regan CM, Weinberg D, Withington P (eds). Intoxication and Society: Problematic Pleasures of Drugs and Alcohol. London: Palgrave MacMillan.  


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Books Edited

Professor Mohamed Al-Rubeai
Al-Rubeai M. and Naciri M (Ed.). (2013) Stem Cells and Cell Therapy. Dordrecht: Springer.  
Professor Suzi Jarvis
S.P. Jarvis and A.S. Mostaert (Ed.). (2012) The Functional Fold. Amyloid structures in nature. Singapore: Pan Stanford Publishing. Available Online  
Professor Ciaran Regan
Herring J, Regan CM, Weinberg D, Withington P (Ed.). (2013) Intoxication and Society: Problematic Pleasures of Drugs and Alcohol. London: Palgrave MacMillan.  


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Peer Reviewed Journals

Professor Mohamed Al-Rubeai
Edros R., McDonnell S., Al-Rubeai M. (2013) 'Using molecular markers to characterise productivity in Chinese hamster ovary cell lines'. PLoS ONE, 8 (10).  
Kennedy E., Al-Majmaie R., Al-Rubeai M., Zerulla D., Rice J. H. (2013) 'Nanoscale infrared absorption imaging permits non-destructive intracellular photosensitiser localisation for subcellular uptake analysis'. Rsc Advances, 3:13789-13795.  
Hilal-Alnaqbi A., Hu A., Zhang Z., Al-Rubeai M. (2013) 'Growth, metabolic activity, and productivity of immobilised and freely suspended CHO cells in perfusion culture'. Biotechnology and Applied Biochemistry, 60:243-247.  
Kiani H., Sun D.-W., Zhang Z., Al-Rubeai M., Naciri M. (2013) 'Ultrasound-assisted freezing of Lactobacillus plantarum subsp. plantarum: The freezing process and cell viability'. Innovative Food Science and Emerging Technologies, 18:138-144.  
Professor Alan Baird
Brayden DJ, Baird AW (2013) 'Opportunities for drug-delivery research in nutraceuticals and functional foods?'. Therapeutic Delivery, 4 (3):301-305.  
Pluta K, McGettigan PA, Reid CJ, Browne JA, Irwin JA, Tharmalingam T, Corfield A, Baird A, Loftus BJ, Evans AC, Carrington SD. (2012) 'Molecular aspects of mucin biosynthesis and mucus formation in the bovine cervix during the periestrous period'. Physiological genomics.  
Medani M, Bzik VA, Rogers A, Collins D, Kennelly R, Winter DC, Brayden DJ, Baird AW (2012) 'Zinc sulphate attenuates chloride secretion in Human colonic mucosae in vitro'. European Journal of Pharmacology, 696 (1-3):166-171.  
Mohan HM, Collins D, Maher S, Walsh EG, Winter DC, O'Brien PJ, Brayden DJ, Baird AW (2012) 'The mycotoxin patulin increases colonic epithelial permeability in vitro'. FOOD CHEM, 50 (11):4097-4102.  
Mohan, H.M., Maher, S., Collins, D., Walsh, E.G., Winter, D.C., O'Brien, P.J., Brayden D.J., & Baird, A.W. (2012) 'The mycotoxin, patulin, increases colonic epithelial permeability. Food and Chemical Toxicology'. Food Chemical Toxicology, 50 (11):4097-4102.  
Pluta K, McGettigan PA, Reid CJ, Browne JA, Irwin JA, Tharmalingam T, Corfield A, Baird AW, Loftus BJ, Evans AC, Carrington SD (2012) 'Molecular aspects of mucin biosynthesis and mucus formation in the bovine cervix during the periestrous period'. Physiological genomics.  
Dr John Andrew Baugh
Glezeva N, Collier P, Voon V, Ledwidge M, McDonald K, Watson C, Baugh J (2013) 'Attenuation of monocyte chemotaxis--a novel anti-inflammatory mechanism of action for the cardio-protective hormone B-type natriuretic peptide'. The Journal of Cardiovascular Translational Research, 6 (4):545-557.  
Robinson CM, Watson CJ, Baugh JA (2012) 'Epigenetics within the matrix: A neo-regulator of fibrotic disease'. Epigenetics: official journal of the DNA Methylation Society, 7 (9):987-993.  
Collier P, Watson CJ, Waterhouse DF, Dawkins IR, Patle AK, Horgan S, Conlon CM, O'Hanlon R, Baugh JA, Ledwidge MT, McDonald K (2012) 'Progression of left atrial volume index in a population at risk for heart failure: a substudy of the STOP-HF (St Vincent's Screening TO Prevent Heart Failure) trial'. European Journal of Heart Failure, 14 (9):957-964.  
Dr Orina Belton
McCarthy, C,Duffy, MM,Mooney, D,James, WG,Griffin, MD,Fitzgerald, DJ,Belton, O (2013) 'IL-10 mediates the immunoregulatory response in conjugated linoleic acid-induced regression of atherosclerosis'. The FASEB journal: official publication of the Federation of American Societies for Experimental Biology, 27:499-510.  
Reynolds, CM,Toomey, S,McBride, R,McMonagle, J,Morine, MJ,Belton, O,Moloney, AP,Roche, HM (2013) 'Divergent effects of a CLA-enriched beef diet on metabolic health in ApoE(-/-) and ob/ob mice'. J Nutr Biochem, 24:401-411.  
McCarthy C, Duffy MM, Mooney D, James WG, Griffin MD, Fitzgerald DJ, Belton O. (2012) 'IL-10 mediates the immunoregulatory response in conjugated linoleic acid-induced regression of atherosclerosis'. FASEB Journal, [Epub ahead of print].  
Dr Oliver Blacque
Olivier-Mason A, Wojtyniak M, Bowie RV, Nechipurenko IV, Blacque OE, Sengupta P (2013) 'Transmembrane protein OSTA-1 shapes sensory cilia morphology via regulation of intracellular membrane trafficking in C. elegans'. Development, 140 (7):1560-1572.  
Professor Billy Bourke
Alvarez LA, Bourke B, Pircalabioru G, Georgiev AY, Knaus UG, Daff S, Corcionivoschi (2013) 'Cj1411c Encodes for a Cytochrome P450 Involved in Campylobacter jejuni 81-176 Pathogenicity'. PLoS ONE, 26 (8).  
Julie Ann Naughton JA, Mariño K, Dolan B, Reid C, Gough R, Gallagher ME, Kilcoyne M, Gerlach JQ, Joshi L, Rudd P, Carrington S, Clyne M, Billy Bourke B (.Joint Snr Co-authors). (2013) 'Divergent mechanisms of interaction of Helicobacter pylori and Campylobacter jejuni with mucus and mucins'. Infection and Immunity, 81:2838-2850.  
Crowley E, Bourke B, Hussey S (2013) 'How to use Helicobacter pylori testing in paediatric practice'. Archives Of Disease In Childhood-Education And Practice Edition, 98 (1):18-25.  
Professor David Brayden
Ryan, S. M., McMorrow, J., Umerska, A., Patel, H. B., Kornerup, K. N., Tajber, L., Murphy, E. P., Perretti, M., Corrigan, O. I., & & Brayden, D. J. (2013) 'An intra-articular salmon calcitonin-based nanocomplex reduces experimental inflammatory arthritis'. Journal of controlled release: official journal of the Controlled Release Society, 167:120-129. Available Online  
Brayden DJ, Baird AW (2013) 'Opportunities for drug-delivery research in nutraceuticals and functional foods?'. Therapeutic Delivery, 4 (3):301-305.  
Petersen, S. B., Nielsen L.G., Rahbek, U.L. Guldbrandt, M. & Brayden, D. J. (2013) 'Colonic absorption of salmon calcitonin using tetradecyl maltoside (TDM) as a permeation enhancer'. European Journal of Pharmaceutical Sciences, 48:726-734. Available Online  
Mohan, H.M., Maher, S., Collins, D., Walsh, E.G., Winter, D.C., O'Brien, P.J., Brayden D.J., & Baird, A.W. (2012) 'The mycotoxin, patulin, increases colonic epithelial permeability. Food and Chemical Toxicology'. Food Chemical Toxicology, 50 (11):4097-4102.  
Petersen, S. B, Nolan,G., Maher, S., Rahbek,U. L., Guldbrandt,M, Brayden, D. J. (2012) 'Evaluation of alkyl maltosides as intestinal permeation enhancers: Comparison between rat intestinal mucosal sheets and Caco-2 monolayers'. European Journal of Pharmaceutical Sciences.  
Dr Lorraine Brennan
Morris C, Gibney M, Roche H, Ryan M, Grada O, De Vito G, Gibney E, Brennan L (2013) 'The relationship between aerobic fitness level and metabolic profiles in healthy adults'. Molecular Nutrition and Food Research.  
Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L (2013) 'Identification of differential responses to an oral glucose tolerance test in healthy adults'. PLoS ONE, 8 (8).  
Matoba S, Bender K, Fahey AG, Mamo S, Brennan L, Lonergan P, Fair T (2013) 'Predictive value of bovine follicular components as markers of oocyte developmental potential'. Reproduction, fertility, and development.  
Neal CM, Hunter AM, Brennan L, O'Sullivan A, Hamilton DL, De Vito G, Galloway SD (2013) 'Six weeks of a polarized training-intensity distribution leads to greater physiological and performance adaptations than a threshold model in trained cyclists'. Journal of Applied Physiology, 114 (4):461-471.  
Ryan, MF,Grada, CO,Morris, C,Segurado, R,Walsh, MC,Gibney, ER,Brennan, L,Roche, HM,Gibney, MJ (2013) 'Within-person variation in the postprandial lipemic response of healthy adults'. American Journal of Clinical Nutrition, 97:261-267.  
Forte, R,Boreham, CAG,Leite, JC,De Vito, G,Brennan, L,Gibney, ER,Pesce, C (2013) 'Enhancing cognitive functioning in the elderly: multicomponent vs resistance training'. Clinical Interventions in Aging, 8:19-27.  
Neal, CM,Hunter, AM,Brennan, L,O'Sullivan, A,Hamilton, DL,DeVito, G,Galloway, SDR (2013) 'Six weeks of a polarized training-intensity distribution leads to greater physiological and performance adaptations than a threshold model in trained cyclists'. Journal of applied physiology (Bethesda, Md.: 1985), 114:461-471.  
Brennan, L (2013) 'Metabolomics in nutrition research: current status and perspectives'. Biochemical Society Transactions, 41:670-673.  
Monahan FJ, Moloney AP, Osorio MT, Röhrle FT, Schmidt O and Brennan L (2012) 'Authentication of grass-fed beef using bovine muscle, hair or urine'. Trends in Food Science & Technology, 28 (2):69-76. Available Online  
Professor Geraldine Butler
Mohan Pammi, Linda Holland, Geraldine Butler, Attila Gacser, Joseph M. Bliss (2013) 'Candida parapsilosis is a Significant Neonatal Pathogen: A Systematic Review and Meta-analysis'. Pediatric Infectious Disease Journal.  
Anastasia Gioti, Björn Nystedt, Wenjun Li, Jun Xud, Anna Andersson, Anna F. Averette, Karin Mnch, Xuying Wang, Catharine Kappauf, Joanne M. Kingsbury, Bart Kraak, Louise A. Walker, Henrik J. Johansson, Tina Holm, Janne Lehtiö, Jason E. Stajich, Piotr Mieczkowski, Regine Kahmann, John C. Kennell, Maria E. Cardenas, Joakim Lundeberg, Charles W. Saunders, Teun Boekhout, Thomas L. Dawson, Carol A. Munro, Piet W.J. de Groot, Geraldine Butler, Joseph Heitman, and Annika Scheynius* (2013) 'Genomic Insights into the Atopic Eczema-Associated Skin Commensal Yeast Malassezia sympodialis'. mBIO.  
Connolly LA, Riccombeni A, Grózer Z, Holland LM, Lynch DB, Andes DR, Gácser A, Butler G. (2013) 'The APSES transcription factor Efg1 is a global regulator that controls morphogenesis and biofilm formation in Candida parapsilosis'. Molecular Microbiology.  
Maguire SL, Ohéigeartaigh SS, Byrne KP, Schröder MS, O'Gaora P, Wolfe KH, Butler G (2013) 'Comparative Genome Analysis and Gene Finding in Candida Species Using CGOB'. Molecular Biology and Evolution, 30 (6):1281-1291.  
Butler, G. (2013) 'Hypoxia and Gene Expression in Eukaryotic Microbes'. Annual Review of Microbiology.  
Gioti, A,Nystedt, B,Li, WJ,Xu, J,Andersson, A,Averette, AF,Munch, K,Wang, XY,Kappauf, C,Kingsbury, JM,Kraak, B,Walker, LA,Johansson, HJ,Holm, T,Lehtio, J,Stajich, JE,Mieczkowski, P,Kahmann, R,Kennell, JC,Cardenas, ME,Lundeberg, J,Saunders, CW,Boekhout, T,Dawson, TL,Munro, CA,de Groot, PWJ,Butler, G,Heitman, J,Scheynius, A (2013) 'Genomic Insights into the Atopic Eczema-Associated Skin Commensal Yeast Malassezia sympodialis'. mBio, 4.  
Alessandro Riccombeni and Geraldine Butler (2012) 'Role of Genomics and RNA-seq in Studies of Fungal Virulence'. Current Fungal Infection Reports.  
Dr Gerard Cagney
Casey WT, Nikodinovic-Runic J, Fonseca Garcia P, Guzik MW, McGrath JW, Quinn JP, Cagney G, Prieto MA, O'Connor KE (2013) 'The effect of polyphosphate kinase gene deletion on polyhydroxyalkanoate accumulation and carbon metabolism in Pseudomonas putida?KT2440'. Environmental Microbiology, 5:740-746.  
Di Cara F, Duca E, Dunbar DR, Cagney G, Heck MM. (2013) 'Invadolysin, a conserved lipid-droplet-associated metalloproteinase, is required for mitochondrial function in Drosophila'. Journal of Cell Science, 126:4769-4781.  
Ryan CJ, Krogan NJ., Cunningham P, Cagney, G. (2013) 'All or nothing: protein complexes flip essentiality between distantly related eukaryotes'. Genome Biology and Evolution. Available Online  
Roguev A, Talbot D, Negri GL, Shales M, Cagney G, Bandyopadhyay S, Panning B, Krogan NJ (2013) 'Quantitative genetic-interaction mapping in mammalian cells'. Nature Methods, 10 (5):432-437.  
Scanlon KA, Cagney C, Walsh D, McNulty D, Carroll A, McNamara EB, McDowell DA, Duffy G (2013) 'Occurrence and characteristics of fastidious Campylobacteraceae species in porcine samples'. International Journal of Food Microbiology, 163 (1):6-13.  
Brien GL, Gambero G, O'Connell DJ, Jerman E, Turner SA, Egan CM, Dunne EJ, Jurgens MC, Wynne K, Piao L, Lohan AJ, Ferguson N, Shi X, Sinha KM, Loftus BJ, Cagney G, Bracken AP. (2012) 'Polycomb PHF19 binds H3K36me3 and recruits PRC2 and demethylase NO66 to embryonic stem cell genes during differentiation'. Nature structural & molecular biology, 19 (12):1273-1281.  
Professor Sean Callanan
Cahalan SD Hick G Rossiter A Callanan JJ (2013) 'Fatal fibrinosuppurative meningitis in a dog associated with Prevotella oralis infection'. Journal of Small Animal Practice, 54 (3):153-155.  
Quinliven M Cook F, Kenna R, Callanan JJ Cullinane A (2013) 'Genetic characterization by composite sequence analysis of a new pathogenic field strain of equine infectious anemia virus from the 2006 outbreak in Ireland'. Journal of General Virology, 94:612-622.  
Chapwanya A Meade KG Doherty ML Callanan JJ O'Farrelly C (2013) 'Endometrial epithelial cells are potent producers of tracheal antimicrobial peptide and serum amyloid A3 gene expression in response to E Coli stimulation'. Veterinary Immunology and Immunopathology, 151:157-162.  
Yang S, Wang B, Tang LS, Siednienko J, Callanan JJ, Moynagh PN (2013) 'Pellino3 targets RIP1 and regulates the pro-apoptotic effects of TNF-α'. Nature communications, 4.  
Terzo E, McConnell JF, Shiel RE, McAllister H, Behr S, Priestnall SL, Smith KC, Nolan CM, Callanan JJ (2012) 'Unique topographic distribution of greyhound nonsuppurative meningoencephalitis'. Veterinary radiology & ultrasound: the official journal of the American College of Veterinary Radiology and the International Veterinary Radiology Association.  
Siednienko J, Jackson R, Mellett M, Delagic N, Yang S, Wang B, Tang LS, Callanan JJ, Mahon BP, Moynagh PN. (2012) 'Pellino 3 targets the IRF7 pathway and facilitates autofegulation of TLR3 and viral-induced expression of type 1 interferons'. NATURE IMMUNOLOGY.  
Foley C, Chapwanya A, Creevey C, Narciandi F, Morris D, Kenny E, Cormican P, Callanan JJ, O'Farrelly C, Meade KG. (2012) 'Global endometrial transcriptomic profiling: transient immune activation precedes tissue proliferation and repair in healthy beef cows'. BMC Genomics.  
Dr Marguerite Clyne
Devon W. Kavanaugh, John O'Callaghan, Ludovica F. Buttó Helen Slattery, Jonathan Lane, Marguerite Clyne, Marian Kane, Lokesh Joshi, Rita M. Hickey (2013) 'Exposure of Bifidobacterium longum subsp. infantis to Milk Oligosaccharides Increases Adhesion to Epithelial Cells and Induces a Substantial Transcriptional Response'. PLoS ONE.  
Julie Ann Naughton JA, Mariño K, Dolan B, Reid C, Gough R, Gallagher ME, Kilcoyne M, Gerlach JQ, Joshi L, Rudd P, Carrington S, Clyne M, Billy Bourke B (.Joint Snr Co-authors). (2013) 'Divergent mechanisms of interaction of Helicobacter pylori and Campylobacter jejuni with mucus and mucins'. Infection and Immunity, 81:2838-2850.  
Dolan B, Naughton J, Tegtmeyer N, May FE, Clyne M. (2012) 'The Interaction of Helicobacter pylori with the Adherent Mucus Gel Layer Secreted by Polarized HT29-MTX-E12 Cells'. PLoS ONE, 7 (10).  
Yan D, Naughton J, Clyne M, Murphy PV. (2012) 'Synthesis of bivalent glycoclusters containing GlcNAc as hexasaccharide mimetics. Bactericidal activity against Helicobacter pylori'. Carbohydrate research, 360:1-7.  
Dr John Crean
Faherty, N., O'Donovan, H., Kavanagh, D., madden, S., McKay, GJ, Maxwell, AP., Martin, F., Godson, C and Crean, J. (2013) 'TGFβ and CCN2/CTGF mediate actin related gene 3 expression by differential E2F1/CREB activation'. BMC Genomics.  
David H Kavanagh, David A Savage, Christopher C Patterson, Amy Jayne McKnight John Crean, Alexander P Maxwell, Gareth J McKay. (2013) 'Haplotype association analysis of genes within the WNT signalling pathways indiabetic nephropathy BMC Nephrology 2013, 14:126'. Nephrology.  
Hookham MB, O'Donovan HC, Church RH, Mercier-Zuber A, Luzi L, Curran SP, Carew RM, Droguett A, Mezzano S, Schubert M, White MF, Crean JK, Brazil DP (2013) 'Insulin receptor substrate-2 is expressed in kidney epithelium and up-regulated in diabetic nephropathy'. FEBS Journal.  
Faherty N, Curran SP, O'Donovan H, Martin F, Godson C, Brazil DP, and Crean J (2012) 'CCN2/CTGF increases expression of miR-302 microRNAs, which target the TGFβ type II receptor with implications for nephropathic cell phenotypes'. Journal of Cell Science.  
Professor Mark Crowe
Beltman ME, Forde N, Lonergan P, Crowe MA (2013) 'Altered endometrial immune gene expression in beef heifers with retarded embryos'. Reproduction Fertility and Development, 25 (6):966-970.  
Scully S, Maillo V, Duffy P, Kelly A, Crowe M, Rizos D, Lonergan P (2013) 'The Effect of Lactation on Post-Partum Uterine Involution in Holstein Dairy Cows'. Reproduction in domestic animals = Zuchthygiene, 48:888-892.  
Herlihy, MM,Crowe, MA,Berry, DP,Diskin, MG,Butler, ST (2013) 'Factors associated with fertility outcomes in cows treated with protocols to synchronize estrus and ovulation in seasonal-calving, pasture-based dairy production systems'. Journal of Dairy Science, 96 (3):1485-1498.  
Mullen MP, Bazer FW, Wu G, Parr MH, Evans AC, Crowe MA, Diskin MG (2013) 'Effects of systemic progesterone during the early luteal phase on the availabilities of amino acids and glucose in the bovine uterine lumen'. Reproduction, fertility, and development.  
Herlihy MM, Giordano JO, Souza AH, Ayres H, Ferreira RM, Keskin A. Nascimento AB, Guenther JN, Gaska JM, Kacuba SJ, Crowe MA, Butler ST, Wiltbank MC (2012) 'Presynchronization with Double-Ovsynch improves fertility at first postpartum artificial insemination in lactating dairy cows'. Journal of Dairy Science, 95 (12):7003-7014.  
Forde, N,Mehta, JP,Minten, M,Crowe, MA,Roche, JF,Spencer, TE,Lonergan, P (2012) 'Effects of Low Progesterone on the Endometrial Transcriptome in Cattle'. Biology of Reproduction, 87 (5):124, 1-11.  
Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC. (2012) 'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon and independent of interferon tau'. Physiolgical Genomics, 44 (16):799-810.  
Gath, VP, Crowe, MA, O'Callaghan, D, Boland, MP, Duffy, P, Lonergan, P, Mulligan, FJ (2012) 'Effects of diet type on establishment of pregnancy and embryo development in beef heifers'. Animal Reproduction Science, 133 (3):139-145.  
Professor Michael Duffy
Duffy Michael (2013) 'Investigation of Molecular Alterations of AKT-3 in Triple Negative Breast Cancer'. Histopathology.  
Duffy Michael (2013) 'Comparative antiproliferative effects of iniparib and olaparib on a panel of triple-negative and non-triple-negative breast cancer cell lines'. Cancer Biology & Therapy.  
Duffy MJ, Lamerz R, Haglund C, Nicolini A, Kalousová M, Holubec L, Sturgeon C (2013) 'Tumor markers in colorectal cancer, gastric cancer and gastrointestinal stromal cancers: European group on tumor markers 2014 guidelines update'. INT J CANCER.  
Duffy MJ (2013) 'The war on cancer: are we winning?'. Tumour biology: the journal of the International Society for Oncodevelopmental Biology and Medicine, 34 (3):1275-1284.  
O Leary PC, Penny SA, Dolan RT, Kelly CM, Madden SF, Rexhepaj E, Brennan DJ, McCann AH, Pontén F, Uhlén M, Zagozdzon R, Duffy MJ, Kell MR, Jirström K, Gallagher WM (2013) 'Systematic antibody generation and validation via tissue microarray technology leading to identification of a novel protein prognostic panel in breast cancer'. BMC Cancer, 13.  
Soletormos, G,Duffy, MJ,Hayes, DF,Sturgeon, CM,Barak, V,Bossuyt, PM,Diamandis, EP,Gion, M,Hyltoft-Petersen, P,Lamerz, RM,Nielsen, DL,Sibley, P,Tholander, B,Tuxen, MK,Bonfrer, JMG (2013) 'Design of Tumor Biomarker-Monitoring Trials: A Proposal by the European Group on Tumor Markers'. Clinical Chemistry, 59:52-59.  
Duffy MJ, McGowan PM, Crown J (2012) 'Targeted therapy for triple-negative breast cancer: Where are we?'. INT J CANCER, 131 (11):2471-2477.  
Browne BC, Eustace AJ, Kennedy S, O'Brien NA, Pedersen K, McDermott MS, Larkin A, Ballot J, Mahgoub T, Sclafani F, Madden S, Kennedy J, Duffy MJ, Crown J, O'Donovan N (2012) 'Evaluation of IGF1R and phosphorylated IGF1R as targets in HER2-positive breast cancer cell lines and tumours'. Breast Cancer Research and Treatment.  
Sölétormos G, Duffy MJ, Hayes DF, Sturgeon CM, Barak V, Bossuyt PM, Diamandis EP, Gion M, Hyltoft-Petersen P, Lamerz RM, Nielsen DL, Sibley P, Tholander B, Tuxen MK, Bonfrer JM (2012) 'Design of Tumor Biomarker-Monitoring Trials: A Proposal by the European Group on Tumor Markers'. Clinical Chemistry.  
McGowan PM, Mullooly M, Caiazza F, Sukor S, Madden SF, Maguire AA, Pierce A, McDermott EW, Crown J, O'Donovan N, Duffy MJ (2012) 'ADAM-17: a novel therapeutic target for triple negative breast cancer'. Annals of Oncology.  
Professor Paul Engel
Munawar, N,Engel, PC (2013) 'Prospects for robust biocatalysis: engineering of novel specificity in a halophilic amino acid dehydrogenase'. Extremophiles, 17:43-51.  
Xuejing Yu, Julia Bresser, Iris Schall, Ivana Djurdjevic, Wolfgang Buckel, Xingguo Wang and Paul C. Engel (2012) 'Development of a satisfactory and general continuous assay for aminotransferases by coupling with (R)-2-hydroxyglutarate dehydrogenase'. Analytical Biochemistry, 431 (2):127-131. Available Online  
Sharkey MA, Gori A, Capone M and Engel PC (2012) 'Reversal of the extreme coenzyme selectivity of Clostridium symbiosum glutamate dehydrogenase'. FEBS Journal, 279 (17):3003-3009.  
Professor Alexander Evans
F Mossa, F Carter, SW Walsh, DA Kenny, GW Smith, P Lonergan, JLH Ireland, JJ Ireland, ACO Evans (2013) 'Maternal undernutrition of heifers diminishes the size of ovarian reserve and increases arterial blood pressure in the offspring'. Biology of Reproduction, 88 (4):1-9.  
MP Mullen, FW Bazer, G Wu, MH Parr, ACO Evans, MA Crowe, MG Diskin (2013) 'Effects of systemic progesterone during the early luteal phase on availabilities of amino acids and glucose in the bovine uterine lumen'. Reproduction, fertility, and development.  
L O'Hara, N Forde, F Carter, D Rizos,V Maillo, AD Ealy, AK Kelly, P Rodriguez, N Isaka, ACO Evans, P Lonergan (2013) 'Paradoxical effect of supplementary progesterone between day 13 and 7 on corpus luteum function and conceptus development in cattle'. Reproduction, fertility, and development.  
SW Walsh, T Fair, JA Browne, ACO Evans, PA Gettigan (2012) 'Physiological status alters immunological regulation of bovine follicle differentiation in dairy cattle'. JOURNAL OF REPRODUCTIVE IMMUNOLOGY, 96.  
K Pluta, PA Mc Gettigan, CJ Reid, JA Browne, JA Irwin, T Tharmalingam, T Corfield, A Baird, BJ Loftus, AC Evans, SD Carrington. (2012) 'Molecular aspects of mucin biosynthesis and mucin formation in the bovine cervix during periestrous period'. Physiological genomics, 44 (42):1165-1178.  
Sikora, K. M., Magee, D. A., Berkowicz, E. W., Lonergan, P., Evans, A. C. O., Carter, F., Comte, A., Waters, S. M., MacHugh, D. E., Spillane, C. (2012) 'PHLDA2 is an imprinted gene in cattle'. Animal Genetics, 43 (5):587-590. Available Online  
Hutchinson IA, Dewhurst RJ, Evans AC, Lonergan P, Butler ST (2012) 'Effect of grass dry matter intake and fat supplementation on progesterone metabolism in lactating dairy cows'. Theriogenology, 78 (4):878-886.  
Dr Neil Ferguson
Alexander, C.G., Jurgens, M.C., Shepherd, D.A., Freund, S.M.V., Ashcroft, A.E & Ferguson, N. (2013) 'Thermodynamic origins of protein folding, allostery and capsid formation in the human hepatitis B virus core protein'. PNAS, 110.  
Jrgens, M.C., Vörös, J., Rautureau, G.J.P., Shepherd, D.AS., Pye, V.E., Muldoon, J., Johnson, C.M., Ashcroft, A.E., Freund, S.M.V. & Ferguson, N. (2013) 'The hepatitis B virus preS1 domain hijacks host trafficking proteins by motif mimicry'. Nature Chemical Biology, 9 (9).  
Brien GL, Gambero G, O'Connell DJ, Jerman E, Turner SA, Egan CM, Dunne EJ, Jurgens MC, Wynne K, Piao L, Lohan AJ, Ferguson N, Shi X, Sinha KM, Loftus BJ, Cagney G, Bracken AP (2012) 'Polycomb PHF19 binds H3K36me3 and recruits PRC2 and demethylase NO66 to embryonic stem cell genes during differentiation'. Nature structural & molecular biology.  
Professor Oliver Fitzgerald
Mongey AB, Doran JP, Kleinerova J, Fitzgerald O, McDonnell TJ. (2013) 'Late onset tuberculosis infection in patients receiving anti-TNFα therapy'. QJM: monthly journal of the Association of Physicians.  
Boehncke WH, Kirby B, Fitzgerald O, van de Kerkhof PC (2013) 'New developments in our understanding of psoriatic arthritis and their impact on the diagnosis and clinical management of the disease'. J Am Acad Dermatol .  
FitzGerald O, Mease PJ (2013) 'Biomarkers: project update from the GRAPPA 2012 annual meeting'. Journal of Rheumatology.  
Helliwell PS, Mease PJ, FitzGerald O, Taylor WJ, van der Heijde D. (2013) 'Peripheral spondyloarthritis and psoriatic arthritis; overlaps and distinctions: a report from the GRAPPA 2012 annual meeting'. Journal of Rheumatology.  
Cobb JE, Plant D, Flynn E, Tadjeddine M, Dieudé P, Cornélis F, Ärlestig L, Dahlqvist SR, Goulielmos G, Boumpas DT, Sidiropoulos P, Krintel SB, Ørnbjerg LM, Hetland ML, Klareskog L, Haeupl T, Filer A, Buckley CD, Raza K, Witte T, Schmidt RE, FitzGerald O, Veale D, Eyre S, Worthington J. (2013) 'Identification of the tyrosine-protein phosphatase non-receptor type 2 as a rheumatoid arthritis susceptibility locus in europeans'. PLoS ONE.  
Smolen JS, Braun J, Dougados M, Emery P, Fitzgerald O, Helliwell P, Kavanaugh A, Kvien TK, Landewé R, Luger T, Mease P, Olivieri I, Reveille J, Ritchlin C, Rudwaleit M, Schoels M, Sieper J, Wit MD, Baraliakos X, Betteridge N, Burgos-Vargas R, Collantes-Estevez E, Deodhar A, Elewaut D, Gossec L, Jongkees M, Maccarone M, Redlich K, van den Bosch F, Wei JC, Winthrop K, van der Heijde D. (2013) 'Treating spondyloarthritis, including ankylosing spondylitis and psoriatic arthritis, to target: recommendations of an international task force'. Annals of Rheumatic Diseases.  
Schoels MM, Braun J, Dougados M, Emery P, Fitzgerald O, Kavanaugh A, Kvien TK, Landewé R, Luger T, Mease P, Olivieri I, Reveille J, Ritchlin C, Rudwaleit M, Sieper J, Smolen JS, Wit MD, van der Heijde D (2013) 'Treating axial and peripheral spondyloarthritis, including psoriatic arthritis, to target: results of a systematic literature search to support an international treat-to-target recommendation in spondyloarthritis'. Annals of Rheumatic Diseases.  
Coates LC, FitzGerald O, Gladman DD, McHugh N, Mease P, Strand V, Helliwell PS. (2013) 'Reduced joint counts misclassify patients with oligoarticular psoriatic arthritis and miss significant numbers of patients with active disease'. Arthritis Rheumatology.  
Collins, E.S., Galligan, M.C., Saldova, R., Adamczyk, B., Abrahams, J.L., Campbell, M.P., Ng, C.T., Veale, D.J., Murphy, T.B., Rudd, P.M., FitzGerald, O. (2013) 'Glycosylation Status of Serum in Inflammatory Arthritis in Response to Anti-TNF Treatment'. Rheumatology, 52 (9):1572-1582.  
Szentpetery A, McKenna MJ, Murray BF, Ng CT, Brady JJ, Morrin M, Radovits B, Veale DJ, Fitzgerald O. (2013) 'Periarticular bone gain at proximal interphalangeal joints and changes in bone turnover markers in response to tumor necrosis factor inhibitors in rheumatoid and psoriatic arthritis'. Journal of Rheumatology.  
Putrik P, Ramiro S, Kvien TK, Sokka T, Pavlova M, Uhlig T, Boonen A (2013) 'Working Group 'Equity in access to treatment of rheumatoid arthritis in Europe'. Inequities in access to biologic and synthetic DMARDs across 46 European countries'. Annals of Rheumatic Diseases.  
Apel, M,Uebe, S,Bowes, J,Giardina, E,Korendowych, E,Juneblad, K,Pasutto, F,Ekici, AB,McManus, R,Ho, P,Bruce, IN,Ryan, AW,Behrens, F,Bohm, B,Traupe, H,Lohmann, J,Gieger, C,Wichmann, HE,Padyukov, L,FitzGerald, O,Alenius, GM,McHugh, NJ,Novelli, G,Burkhardt, H,Barton, A,Reis, A,Huffmeier, U (2013) 'Variants in RUNX3 Contribute to Susceptibility to Psoriatic Arthritis, Exhibiting Further Common Ground With Ankylosing Spondylitis'. Arthritis and Rheumatism, 65:1224-1231.  
French HP, Cusack T, Brennan A, White B, Gilsenan C, Fitzpatrick M, O'Connell P, Kane D, Fitzgerald O, McCarthy GM (2013) 'Exercise and Manual therapy Arthritis Research trial (EMPART) for osteoarthritis of the hip: A Multicentre Randomised Controlled trial'. Archives of Physical Medicine and Rehabilitation.  
Tsoi LC, Spain SL, Knight J, Ellinghaus E, Stuart PE, Capon F, Ding J, Li Y, Tejasvi T, Gudjonsson JE, Kang HM, Allen MH, McManus R, Novelli G, Samuelsson L, Schalkwijk J, Ståhle M, Burden AD, Smith CH, Cork MJ, Estivill X, Bowcock AM, Krueger GG, Weger W, Worthington J, Tazi-Ahnini R, Nestle FO, Hayday A, Hoffmann P, Winkelmann J, Wijmenga C, Langford C, Edkins S, Andrews R, Blackburn H, Strange A, Band G, Pearson RD, Vukcevic D, Spencer CC, Deloukas P, Mrowietz U, Schreiber S, Weidinger S, Koks S, Kingo K, Esko T, Metspalu A, Lim HW, Voorhees JJ, Weichenthal M, Wichmann HE, Chandran V, Rosen CF, Rahman P, Gladman DD, Griffiths CE, Reis A, Kere J (2012) 'Collaborative Association Study of Psoriasis (CASP); Genetic Analysis of Psoriasis Consortium; Psoriasis Association Genetics Extension; Wellcome Trust Case Control Consortium 2, Nair RP, Franke A, Barker JN, Abecasis GR, Elder JT, Trembath RC. Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity'. Nature Genetics.  
Helliwell PS, Fitzgerald O, Mease PJ, Gladman DD. (2012) 'GRAPPA Responder Index Project (GRACE): a report from the GRAPPA 2011 annual meeting'. Journal of Rheumatology.  
FitzGerald O. (2012) 'Diagnosis: Screening for arthritis in patients with psoriasis'. Rheumatology.  
Doyle MS, Collins ES, Fitzgerald OM, Pennington SR. (2012) 'New insight into the functions of the interleukin-17 receptor adaptor protein Act1 in psoriatic arthritis'. Arthritis Research & Therapy.  
Professor William Gallagher
Madden S. F., Clarke C., Aherne S. T., Gaule P., O'Donovan N., Crown J., Clynes M., Gallagher W.M. (2013) 'BreastMark: an integrated approach to mining publicly available transcriptomic datasets relating to breast cancer outcome'. Breast Cancer Research, 15 (4).  
Clarke C, Madden SF, Doolan P, Aherne ST, Joyce H, O' Driscoll L, Gallagher WM, Hennessy BT, Moriarty M, Crown J, Kennedy S, Clynes M (2013) 'Correlating transcriptional networks to breast cancer survival: A large-scale coexpression analysis'. Carcinogenesis.  
Prencipe M, Madden SF, O'Neill A, O'Hurley G, Culhane A, O'Connor D, Klocker H, Kay EW, Gallagher WM, Watson WR. (2013) 'Identification of transcription factors associated with castration-resistance: is the serum responsive factor a potential therapeutic target?'. Prostate, 73 (7):743-753.  
Rexhepaj E, Agnarsdóttir M, Bergman J, Edqvist PH, Bergqvist M, Uhlén M, Gallagher WM, Lundberg E, Ponten F. (2013) 'A texture based pattern recognition approach to distinguish melanoma from non-melanoma cells in histopathological tissue microarray sections'. PLoS ONE, 8 (5).  
O'Connor S, Szwej E, Nikodinovic-Runic J, O'Connor A, Byrne AT, Devocelle M, O'Donovan N, Gallagher WM, Babu R, Kenny ST, Zinn M, Zulian QR, O'Connor KE (2013) 'The anti-cancer activity of a cationic anti-microbial peptide derived from monomers of polyhydroxyalkanoate'. Biomaterials, 34 (11):2710-2718.  
O Leary PC, Penny SA, Dolan RT, Kelly CM, Madden SF, Rexhepaj E, Brennan DJ, McCann AH, Pontén F, Uhlén M, Zagozdzon R, Duffy MJ, Kell MR, Jirström K, Gallagher WM (2013) 'Systematic antibody generation and validation via tissue microarray technology leading to identification of a novel protein prognostic panel in breast cancer'. BMC Cancer, 13 (175).  
Mitchem JB, Brennan DJ, Knolhoff BL, Belt BA, Zhu Y, Sanford DE, Belaygorod L, Carpenter D, Collins L, Piwnica-Worms D, Hewitt S, Udupi GM, Gallagher WM, Wegner C, West BL, Wang-Gillam A, Goedegebuure P, Linehan DC, DeNardo DG. (2013) 'Targeting tumor-infiltrating macrophages decreases tumor-initiating cells, relieves immunosuppression, and improves chemotherapeutic responses'. Cancer Research, 73 (3):1128-1141.  
Mulrane L, Madden SF, Brennan DJ, Gremel G, McGee SF, McNally S, Martin F, Crown JP, Jirström K, Higgins DG, Gallagher WM, O'Connor DP (2012) 'miR-187 Is an Independent Prognostic Factor in Breast Cancer and Confers Increased Invasive Potential In Vitro'. Clinical Cancer Research.  
Professor Declan Gerard Gilheany
Peter A. Byrne, Declan G. Gilheany (2013) 'The modern interpretation of the Wittig reaction mechanism'. Chemical Society Reviews, 42.  
Arne Ficks, Rachel M. Hiney, Ross W. Harrington, Declan G. Gilheany, Lee J. Higham, (2012) 'MOP-phosphonites: A novel ligand class for asymmetric catalysis'. Dalton Transactions, 41.  
Peter A. Byrne, Lee J. Higham, Padraic McGovern, Declan G. Gilheany (2012) 'Anomalous Z-isomer content in Wittig reaction products from keto-stabilised ylides with ortho-heteroatom substituted benzaldehydes'. Tetrahedron Letters, 53 (49):6701-6704.  
Kirill Nikitin, Helge Mueller-Bunz, Declan G. Gilheany (2012) 'Direct evidence of a multicentre halogen bond: unexpected contraction of the P-?XXX-?P fragment in triphenylphosphine dihalides'. Chemical Communications, 49 (14):1434-1436.  
Professor Catherine Godson
Faherty, N., O'Donovan, H., Kavanagh, D., madden, S., McKay, GJ, Maxwell, AP., Martin, F., Godson, C and Crean, J. (2013) 'TGFβ and CCN2/CTGF mediate actin related gene 3 expression by differential E2F1/CREB activation'. BMC Genomics.  
Corcoran JB, McCarthy S, Griffin B, Gaffney A, Bhreathnach U, Börgeson E, Hickey FB, Docherty NG, Higgins DF, Furlong F, Martin F, Godson C, Murphy M (2013) 'IHG-1 must be localised to mitochondria to decrease Smad7 expression and amplify TGF-β1-induced fibrotic responses'. Biochimica et biophysica acta, 1833 (8):1969-1978.  
Brennan EP, Nolan KA, Börgeson E, Gough OS, McEvoy CM, Docherty NG, Higgins DF, Murphy M, Sadlier DM, Ali-Shah ST, Guiry PJ, Savage DA, Maxwell AP, Martin F, Godson C (2013) 'Lipoxins attenuate renal fibrosis by inducing let-7c and suppressing TGFβR1'. Journal of the American Society of Nephrology, 24 (4):627-637.  
Brennan, EP,Nolan, KA,Borgeson, E,Gough, OS,McEvoy, CM,Docherty, NG,Higgins, DF,Murphy, M,Sadlier, DM,Ali-Shah, ST,Guiry, PJ,Savage, DA,Maxwell, AP,Martin, F,Godson, C (2013) 'Lipoxins Attenuate Renal Fibrosis by Inducing let-7c and Suppressing TGF beta R1'. J AM SOC NEPHROL, 24:627-637.  
Murphy M, Hickey F, Godson C (2013) 'IHG-1 amplifies TGF-β1 signalling and mitochondrial biogenesis and is increased in diabetic kidney disease'. Current Opinion in Nephrology and Hypertension, 22 (1):77-84.  
Borgeson, E., McGillicuddy, F. C., Harford, K. A., Corrigan, N., Higgins, D. F., Maderna, P., Roche, H. M., Godson, C. (2012) 'Lipoxin A4 attenuates adipose inflammation'. FASEB J, 26 (10):4287-94. Available Online  
Börgeson E, McGillicuddy FC, Harford KA, Corrigan N, Higgins DF, Maderna P, Roche HM, Godson C (2012) 'Lipoxin A4 attenuates adipose inflammation'. FASEB Journal, 26 (10):4287-4294.  
Faherty N, Curran SP, O'Donovan H, Martin F, Godson C, Brazil DP, and Crean J (2012) 'CCN2/CTGF increases expression of miR-302 microRNAs, which target the TGFβ type II receptor with implications for nephropathic cell phenotypes'. Journal of Cell Science.  
Professor Stephen Gordon
Allen AR, Dale J, McCormick C, Mallon TR, Costello E, Gordon SV, Hewinson RG, Skuce RA, Smith NH (2013) 'The phylogeny and population structure of Mycobacterium bovis in the British Isles'. Infection Genetics And Evolution, 20C:8-15.  
Firdessa R, Berg S, Hailu E, Schelling E, Gumi B, Erenso G, Gadisa E, Kiros T, Habtamu M, Hussein J, Zinsstag J, Robertson BD, Ameni G, Lohan AJ, Loftus B, Comas I, Gagneux S, Tschopp R, Yamuah L, Hewinson G, Gordon SV, Young DB, Aseffa A (2013) 'Mycobacterial lineages causing pulmonary and extrapulmonary tuberculosis, Ethiopia'. Emerging Infectious Diseases, 19 (3):460-463.  
Gouzy, A,Nigou, J,Gilleron, M,Neyrolles, O,Tailleux, L,Gordon, SV (2013) 'Tuberculosis 2012: biology, pathogenesis and intervention strategies; an update from the city of light'. Research in Microbiology, 164:270-280.  
Nalpas, NC,Park, SDE,Magee, DA,Taraktsoglou, M,Browne, JA,Conlon, KM,Rue-Albrecht, K,Killick, KE,Hokamp, K,Lohan, AJ,Loftus, BJ,Gormley, E,Gordon, SV,MacHugh, DE (2013) 'Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro'. BMC Genomics, 14.  
Sharkey, MA; O'Gara, JP; Gordon, SV; Hackenberg, F; Healy, C; Paradisi, F; Patil, S; Schaible, B; Tacke, M (2012) 'Investigations into the Antibacterial Activity of the Silver-Based Antibiotic Drug Candidate SBC3'. Antibiotics, 1:25-28.  
Professor Andrew Green
Dobson MG, Darlow JM, Hunziker M, Green AJ, Barton DE, Puri P. (2013) 'Heterozygous non-synonymous ROBO2 variants are unlikely to be sufficient to cause familial vesicoureteric reflux'. Kidney International.  
McGorrian C, Constant O, Harper N, O'Donnell C, Codd M, Keelan E, Green A, O'Neill J, Galvin J, Mahon NG. (2013) 'Family-based cardiac screening in relatives of victims of sudden arrhythmic death syndrome'. Europace .  
Palles C, Cazier JB, Howarth KM, Domingo E, Jones AM, Broderick P, Kemp Z, Spain SL, Almeida EG, Salguero I, Sherborne A, Chubb D, Carvajal-Carmona LG, Ma Y, Kaur K, Dobbins S, Barclay E, Gorman M, Martin L, Kovac MB, Humphray S; CORGI Consortium; WGS500 Consortium, Lucassen A, Holmes CC, Bentley D, Donnelly P, Taylor J, Petridis C, Roylance R, Sawyer EJ, Kerr DJ, Clark S, Grimes J, Kearsey SE, Thomas HJ, McVean G, Houlston RS, Tomlinson I. (2013) 'Germline mutations affecting the proofreading domains of POLE and POLD1 predispose to colorectal adenomas and carcinomas'. Nature Genetics.  
Flanagan, SE,Xie, WJ,Caswell, R,Damhuis, A,Vianey-Saban, C,Akcay, T,Darendeliler, F,Bas, F,Guven, A,Siklar, Z,Ocal, G,Berberoglu, M,Murphy, N,O'Sullivan, M,Green, A,Clayton, PE,Banerjee, I,Clayton, PT,Hussain, K,Weedon, MN,Ellard, S (2013) 'Next-Generation Sequencing Reveals Deep Intronic Cryptic ABCC8 and HADH Splicing Founder Mutations Causing Hyperinsulinism by Pseudoexon Activation'. American Journal of Human Genetics, 92:131-136.  
Dr Jana Haase
Malynn, S,Campos-Torres, A,Moynagh, P,Haase, J (2013) 'The Pro-inflammatory Cytokine TNF-alpha Regulates the Activity and Expression of the Serotonin Transporter (SERT) in Astrocytes'. Neurochemical Research, 38:694-704.  
Dr Chandralal Hewage
Hewage CM, Venneti KC (2013) 'Structural aspects of gut peptides with therapeutic potential for type 2 diabetes'. Chemmedchem, 8 (4):560-567.  
Kenny, O., Smyth, T. J., Hewage, C. M., Brunton, N. P (2013) 'Antioxidant properties and quantitative UPLC-MS analysis of phenolic compounds from extracts of fenugreek (Trigonella foenum-graecum) seeds and bitter melon (Momordica charantia) fruit'. Food Chemistry, 141 (4):4295-4302.  

Professor Desmond Gerard Higgins
Hughes G.M., Gang L., Murphy W.J., Higgins D.G., Teeling E.C. (2013) 'Using Illumina Next Generation Sequencing Technologies to Sequence Multigene Families in de novo Species'. Molecular Ecology Resources, 13 (3):510-512.  
Sievers, F,Dineen, D,Wilm, A,Higgins, DG (2013) 'Making automated multiple alignments of very large numbers of protein sequences'. Bioinformatics, 29:989-995.  
Mulrane L, Madden SF, Brennan DJ, Gremel G, McGee SF, McNally S, Martin F, Crown JP, Jirström K, Higgins DG, Gallagher WM, O'Connor DP (2012) 'miR-187 Is an Independent Prognostic Factor in Breast Cancer and Confers Increased Invasive Potential In Vitro'. Clinical Cancer Research.  
Professor Suzi Jarvis
Forman, CJ,Wang, N,Yang, ZY,Mowat, CG,Jarvis, S,Durkan, C,Barker, PD (2013) 'Probing the location of displayed cytochrome b(562) on amyloid by scanning tunnelling microscopy'. Nanotechnology, 24.  
Dr Breand?Kennedy
Collery RF, Cederlund ML, Kennedy BN (2013) 'Transgenic zebrafish expressing mutant human RETGC-1 exhibit aberrant cone and rod morphology'. Experimental Eye Research.  
Jun Yin1, Lisa Shine2, Francis Raycroft3, Sudhakar Deeti2, Alison Reynolds2, Kristin M. Ackerman3, Antonino Glaviano2, Sean O'Farrell2, Olivia O'Leary2, Claire Kilty2, Ciaran Kennedy2, Sarah McLoughlin2, Megan Rice2, Eileen Russell2, Desmond G. Higgins1, David R. Hyde3 & Breandan N. Kennedy2* (2012) 'INHIBITION OF THE PIM1 ONCOGENE RESULTS IN DIMINISHED VISUAL FUNCTION'. PLoS ONE.  
Professor Boris Kholodenko
Volinsky N, Kholodenko BN (2013) 'Complexity of receptor tyrosine kinase signal processing'. Cold Spring Harbor perspectives in biology, 5 (8).  
Nguyen LK, Kolch W, Kholodenko BN (2013) 'When ubiquitination meets phosphorylation: a systems biology perspective of EGFR/MAPK signalling'. Cell communication and signaling: CCS, 11.  
Santra T, Kolch W, Kholodenko BN (2013) 'Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology'. BMC systems biology, 7.  
Reiterer V, Fey D, Kolch W, Kholodenko BN, Farhan H (2013) 'Pseudophosphatase STYX modulates cell-fate decisions and cell migration by spatiotemporal regulation of ERK1/2'. Proceedings of the National Academy of Sciences of the United States of America, 110 (31):1-43.  
Baljuls A, Kholodenko BN, Kolch W. (2013) 'It takes two to tango--signalling by dimeric Raf kinases'. Molecular BioSystems .  
Nguyen LK, Cavadas MA, Scholz CC, Fitzpatrick SF, Bruning U, Cummins EP, Tambuwala MM, Manresa MC, Kholodenko BN, Taylor CT, Cheong A (2013) 'A dynamic model of the hypoxia-inducible factor 1-alpha (HIF-1a) network'. Journal of Cell Science.  
Birtwistle MR, Kriegsheim Av, Dobrzy?ki M, Kholodenko BN, Kolch W (2012) 'Mammalian protein expression noise: scaling principles and the implications for knockdown experiments'. Molecular BioSystems, 8 (11):3068-3076.  
Professor Therese Kinsella
Birrane G, Mulvaney EP, Pal R, Kinsella BT, Kocher O. (2013) 'Molecular analysis of the prostacyclin receptor's interaction with the PDZ1 domain of its adaptor protein PDZK1'. PLoS ONE, 8 (2).  
Turner EC, Kinsella BT. (2012) 'Regulation of the Human Prostacyclin Receptor Gene by the Cholesterol-responsive Sterol Response Element Binding Protein (SREBP) 1'. Journal of lipid research, 53 (11):2390-2402.  
Professor Ulla Knaus
Hayes, P; Knaus, UK (2012) 'Balancing ROS in the epigenome: NADPH oxidases as target and perpetrator'. Antioxidants & Redox Signaling .  
Professor Walter Kolch
Santra, T., Kolch, W., Kholodenko, B. N. (2013) 'Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology'. BMC Syst Biol, 7.  
Nguyen, L. K., Kolch, W., Kholodenko, B. N. (2013) 'When ubiquitination meets phosphorylation: a systems biology perspective of EGFR/MAPK signalling'. Cell Commun Signal, 11.  
Reiterer, V., Fey, D., Kolch, W., Kholodenko, B. N., Farhan, H. (2013) 'Pseudophosphatase STYX modulates cell-fate decisions and cell migration by spatiotemporal regulation of ERK1/2'. Proc Natl Acad Sci U S A, 110 (31).  
Baljuls A, Kholodenko BN, Kolch W (2013) 'It takes two to tango--signalling by dimeric Raf kinases'. Molecular BioSystems, 9 (4):551-558.  
Preisinger, C., Schwarz, J. P., Bleijerveld, O. B., Corradini, E., Muller, P. J., Anderson, K. I., Kolch, W., Scholten, A., Heck, A. J. (2013) 'Imatinib-dependent tyrosine phosphorylation profiling of Bcr-Abl-positive chronic myeloid leukemia cells'. Leukemia, 27 (3):743-6.  
Rauch, J., Kolch, W., Laurent, S., Mahmoudi, M. (2013) 'Big Signals from Small Particles: Regulation of Cell Signaling Pathways by Nanoparticles'. Chem Rev.  
Doyle, B,Hagan, S,Al-Mulla, F,Scott, L,Harden, S,Paul, J,Mulcahy, H,Murray, GI,Sheahan, K,O'Sullivan, J,Kolch, W (2013) 'Raf kinase inhibitor protein expression combined with peritoneal involvement and lymphovascular invasion predicts prognosis in Dukes' B colorectal cancer patients'. Histopathology, 62:505-510.  
Romano, D,Maccario, H,Doherty, C,Quinn, NP,Kolch, W,Matallanas, D (2013) 'The Differential Effects of Wild-Type and Mutated K-Ras on MST2 Signaling Are Determined by K-Ras Activation Kinetics'. Molecular and Cellular Biology, 33:1859-1868.  
Brown, KM,Day, JP,Huston, E,Zimmermann, B,Hampel, K,Christian, F,Romano, D,Terhzaz, S,Lee, LCY,Willis, MJ,Morton, DB,Beavo, JA,Shimizu-Albergine, M,Davies, SA,Kolch, W,Houslay, MD,Baillie, GS (2013) 'Phosphodiesterase-8A binds to and regulates Raf-1 kinase'. Proceedings of the National Academy of Sciences of the United States of America, 110:1533-1542.  
Birtwistle MR, Kriegsheim Av, Dobrzy?ki M, Kholodenko BN, Kolch W (2012) 'Mammalian protein expression noise: scaling principles and the implications for knockdown experiments'. Molecular BioSystems, 8 (11):3068-3076.  
Professor Carel Le Roux
Neff, KJH,le Roux, CW (2013) 'Bariatric surgery: a best practice article'. J Clin Pathol, 66:90-98.  
Seyfried, F,Li, JV,Miras, AD,Cluny, NL,Lannoo, M,Fenske, WK,Sharkey, KA,Nicholson, JK,le Roux, CW,Holmes, E (2013) 'Urinary Phenotyping Indicates Weight Loss-Independent Metabolic Effects of Roux-en-Y Gastric Bypass in Mice'. Journal of Proteome Research, 12:1245-1253.  
Iesari, S,le Roux, CW,De Gaetano, A,Manco, M,Nanni, G,Mingrone, G (2013) 'Twenty-Four Hour Energy Expenditure and Skeletal Muscle Gene Expression Changes After Bariatric Surgery'. Journal Of Clinical Endocrinology & Metabolism, 98:321-327.  
Papamargaritis, D,le Roux, CW,Sioka, E,Koukoulis, G,Tzovaras, G,Zacharoulis, D (2013) 'Changes in gut hormone profile and glucose homeostasis after laparoscopic sleeve gastrectomy'. Surgery For Obesity And Related Diseases, 9:192-201.  
Professor Gil Lee
Fields C, O'Connell D, Xiao S, Lee GU, Billiald P, Muzard J (2013) 'Creation of recombinant antigen-binding molecules derived from hybridomas secreting specific antibodies'. Nature protocols, 8 (6):1125-1148.  
J.J. O'Mahony, M. Platt, D. Kilinc, and G. Lee (2013) 'Synthesis of Superparamagnetic Particles with Tunable Morphologies: The Role of Nanoparticle-Nanoparticle Interaction'. Langmuir: the ACS journal of surfaces and colloids, 29:2546-2553.  
Y. Zhang, Q. Wang, B. Ashall, D. Zerulla, and G.U Lee (2013) 'Magnetic-Plasmonic Dual Modulated FePt-Au Ternary Heterostructured Nanorods as a Promising Nano-Bioprobe'. Advanced Materials, 25:502-502.  
Devrim Kilinc and Gil Lee (2013) 'Advances in Magnetic Tweezers for Single Molecule and Cell Biophysics'. Integrative Biology.  
Zhang, Y, Ashall, B, Doyle, G, Zerulla, D and Lee, GU (2012) 'Highly Ordered Fe−Au Heterostructured Nanorod Arrays and Their Exceptional Near-Infrared Plasmonic Signature'. Langmuir.  
Kilinc, D, Blasiak, A, O'Mahony, JJ, Suter, DM, and Lee, GU (2012) 'Magnetic Tweezers-Based Force Clamp Reveals Mechanically Distinct apCAM Domain Interactions'. Biophysical Journal, 103 (6):1120-1129.  
Professor Brendan Loftus
ÓMaoiléidigh DS, Wuest SE, Rae L, Raganelli A, Ryan PT, Kwasniewska K, Das P, Lohan AJ, Loftus B, Graciet E, Wellmer F (2013) 'Control of reproductive floral organ identity specification in Arabidopsis by the C function regulator AGAMOUS'. Plant Cell.  
Nalpas, N. C., Park, S. D., Magee, D. A., Taraktsoglou, M., Browne, J. A., Conlon, K. M., Rue-Albrecht, K., Killick, K. E., Hokamp, K., Lohan, A. J., Loftus, B. J., Gormley, E., Gordon, S. V., Machugh, D. E. (2013) 'Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro'. BMC Genomics, 14 (1).  
Firdessa R, Berg S, Hailu E, Schelling E, Gumi B, Erenso G, Gadisa E, Kiros T, Habtamu M, Hussein J, Zinsstag J, Robertson BD, Ameni G, Lohan AJ, Loftus B, Comas I, Gagneux S, Tschopp R, Yamuah L, Hewinson G, Gordon SV, Young DB, Aseffa A. (2013) 'Mycobacterial lineages causing pulmonary and extrapulmonary tuberculosis, Ethiopia'. Emerging Infectious Diseases.  
Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C, Kianianmomeni A, Burglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C, Paponov I, Finkler A, Soon Heng Tan C, Hutchins AP, Weinmeier T, Rattei T, Chu JS, Gimenez G, Irimia M, Rigden DJ, Fitzpatrick DA, Lorenzo-Morales J, Bateman A, Chiu CH, Tang P, Hegemann P, Fromm H, Raoult D, Greub G, Miranda-Saavedra D, Chen N, Nash P, Ginger ML, Horn M, Schaap P, Caler L, Loftus B (2013) 'Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling'. Genome Biology. Available Online  
Martin-Navarro, CM,Lorenzo-Morales, J,Machin, RP,Lopez-Arencibia, A,Garcia-Castellano, JM,de Fuentes, I,Loftus, B,Maciver, SK,Valladares, B,Pineroa, JE (2013) 'Inhibition of 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase and Application of Statins as a Novel Effective Therapeutic Approach against Acanthamoeba Infections'. Antimicrobial Agents and Chemotherapy, 57:375-381.  
Nalpas, NC,Park, SDE,Magee, DA,Taraktsoglou, M,Browne, JA,Conlon, KM,Rue-Albrecht, K,Killick, KE,Hokamp, K,Lohan, AJ,Loftus, BJ,Gormley, E,Gordon, SV,MacHugh, DE (2013) 'Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro'. BMC Genomics, 14.  
Brien GL, Gambero G, O'Connell DJ, Jerman E, Turner SA, Egan CM, Dunne EJ, Jurgens MC, Wynne K, Piao L, Lohan AJ, Ferguson N, Shi X, Sinha KM, Loftus BJ, Cagney G, Bracken AP (2012) 'Polycomb PHF19 binds H3K36me3 and recruits PRC2 and demethylase NO66 to embryonic stem cell genes during differentiation'. Nature structural & molecular biology.  
Professor Patrick Lonergan
Forde N, Mehta JP, McGettigan PA, Mamo S, Bazer FW, Spencer TE, Lonergan P (2013) 'Alterations in expression of endometrial genes coding for proteins secreted into the uterine lumen during conceptus elongation in cattle'. Genomics, 14.  
Scully S, Maillo V, Duffy P, Kelly A, Crowe M, Rizos D, Lonergan P (2013) 'The Effect of Lactation on Post-Partum Uterine Involution in Holstein Dairy Cows'. Reproduction in domestic animals = Zuchthygiene, 48:888-892.  
Matoba S, Bender K, Fahey AG, Mamo S, Brennan L, Lonergan P, Fair T (2013) 'Predictive value of bovine follicular components as markers of oocyte developmental potential'. Reproduction, fertility, and development.  
Maillo V, Duffy P, O'Hara L, de Frutos C, Kelly AK, Lonergan P, Rizos D (2013) 'Effect of hCG administration during corpus luteum establishment on subsequent corpus luteum development and circulating progesterone concentrations in beef heifers'. Reproduction, fertility, and development.  
Mossa, F,Carter, F,Walsh, SW,Kenny, DA,Smith, GW,Ireland, JLH,Hildebrandt, TB,Lonergan, P,Ireland, JJ,Evans, ACO (2013) 'Maternal Undernutrition in Cows Impairs Ovarian and Cardiovascular Systems in Their Offspring'. Biology of Reproduction, 88.  
Spencer TE, Forde N, Dorniak P, Hansen TR, Romero JJ, Lonergan P (2013) 'Conceptus-derived prostaglandins regulate gene expression in the endometrium prior to pregnancy recognition in ruminants'. Reproduction (Cambridge, England), 146 (4):377-387.  
Forde, N,Mehta, JP,Minten, M,Crowe, MA,Roche, JF,Spencer, TE,Lonergan, P (2012) 'Effects of Low Progesterone on the Endometrial Transcriptome in Cattle'. Biology of Reproduction, 87 (5):124, 1-11.  
Sikora KM, Magee DA, Berkowicz EW, Lonergan P, Evans AC, Carter F, Comte A, Waters SM, Machugh DE, Spillane C (2012) 'PHLDA2 is an imprinted gene in cattle'. Animal Genetics, 43 (5):587-590.  
Sikora, K. M., Magee, D. A., Berkowicz, E. W., Lonergan, P., Evans, A. C. O., Carter, F., Comte, A., Waters, S. M., MacHugh, D. E., Spillane, C. (2012) 'PHLDA2 is an imprinted gene in cattle'. Animal Genetics, 43 (5):587-590. Available Online  
Beltman ME, Forde N, Lonergan P, Crowe MA. (2012) 'Altered endometrial immune gene expression in beef heifers with retarded embryos'. Reproduction Fertility and Development.  
Hutchinson IA, Dewhurst RJ, Evans AC, Lonergan P, Butler ST (2012) 'Effect of grass dry matter intake and fat supplementation on progesterone metabolism in lactating dairy cows'. Theriogenology, 78 (4):878-886.  
Forde N, Carter F, di Francesco S, Prakash Mehta J, Garcia-Herreros M, Gad AY, Tesfaye D, Hoelker M, Schellander K, Lonergan P (2012) 'Endometrial response of beef heifers on Day 7 following insemination to supra-physiological concentrations of progesterone associated with superovulation'. Genomics.  
Mamo S, Rizos D, Lonergan P (2012) 'Transcriptomic changes in the bovine conceptus between the blastocyst stage and initiation of implantation'. Animal Reproduction Science, 134 (1-2):56-63.  
Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC. (2012) 'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon and independent of interferon tau'. Physiolgical Genomics, 44 (16):799-810.  
Gath, VP, Crowe, MA, O'Callaghan, D, Boland, MP, Duffy, P, Lonergan, P, Mulligan, FJ (2012) 'Effects of diet type on establishment of pregnancy and embryo development in beef heifers'. Animal Reproduction Science, 133 (3):139-145.  
Professor David MacHugh
Orr, N., Hill, E. W., Gu, J., Govindarajan, P., Conroy, J., van Grevenhof, E. M., Ducro, B. J., van Arendonk, J. A., Knaap, J. H., van Weeren, P. R., Machugh, D. E., Ennis, S., Brama, P. A. (2013) 'Genome-wide association study of osteochondrosis in the tarsocrural joint of Dutch Warmblood horses identifies susceptibility loci on chromosomes 3 and 10'. Anim Genet, 44 (4):408-12.  
Nalpas, N. C., Park, S. D., Magee, D. A., Taraktsoglou, M., Browne, J. A., Conlon, K. M., Rue-Albrecht, K., Killick, K. E., Hokamp, K., Lohan, A. J., Loftus, B. J., Gormley, E., Gordon, S. V., Machugh, D. E. (2013) 'Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro'. BMC Genomics, 14 (1).  
B McGivney, J Browne, R Fonseca, D MacHugh, R Whiston, L Katz, E Hill ; (2012) 'MSTN genotypes in Thoroughbred horses influence skeletal muscle gene expression and racetrack performance'. Animal Genetics, 43 (6).  
Hill, Emmeline W., Ryan, Donal P., MacHugh, David E. (2012) 'Horses for Courses: a DNA-based Test for Race Distance Aptitude in Thoroughbred Racehorses'. Recent patents on DNA & gene sequences, 6 (3):203-8. Available Online  
Sikora, K. M., Magee, D. A., Berkowicz, E. W., Lonergan, P., Evans, A. C. O., Carter, F., Comte, A., Waters, S. M., MacHugh, D. E., Spillane, C. (2012) 'PHLDA2 is an imprinted gene in cattle'. Animal Genetics, 43 (5):587-590. Available Online  
Waters, Sinead M., Coyne, Gerard S., Kenny, David A., MacHugh, David E., Morris, Dermot G. (2012) 'Dietary n-3 polyunsaturated fatty acid supplementation alters the expression of genes involved in the control of fertility in the bovine uterine endometrium'. Physiological Genomics, 44 (18):878-888. Available Online  
Dr Patricia Maguire
Macaulay IC, Thon JN, Tijssen MR, Steele BM, MacDonald BT, Meade G, Burns P, Rendon A, Salunkhe V, Murphy RP, Bennett C, Watkins NA, He X, Fitzgerald DJ, Italiano JE Jr, Maguire PB (2013) 'Canonical Wnt signaling in megakaryocytes regulates proplatelet formation'. Blood, 121 (1):188-196.  
Professor Jonathan Malthouse
Howe N, Ceruso M, Spink E, Malthouse JP; (2012) 'pH stability of the stromelysin-1 catalytic domain and its mechanism of interaction with a glyoxal inhibitor'. Biochimica et biophysica acta, 1814 (10):1394-1403.  
Professor Finian Martin
Corcoran JB, McCarthy S, Griffin B, Gaffney A, Bhreathnach U, Börgeson E, Hickey FB, Docherty NG, Higgins DF, Furlong F, Martin F, Godson C, Murphy M (2013) 'IHG-1 must be localised to mitochondria to decrease Smad7 expression and amplify TGF-β1-induced fibrotic responses'. Biochimica et biophysica acta, 1833 (8):1969-1978.  
Faherty, N., O'Donovan, H., Kavanagh, D., madden, S., McKay, GJ, Maxwell, AP., Martin, F., Godson, C and Crean, J. (2013) 'TGFβ and CCN2/CTGF mediate actin related gene 3 expression by differential E2F1/CREB activation'. BMC Genomics.  
Brennan EP, Nolan KA, Börgeson E, Gough OS, McEvoy CM, Docherty NG, Higgins DF, Murphy M, Sadlier DM, Ali-Shah ST, Guiry PJ, Savage DA, Maxwell AP, Martin F, Godson C (2013) 'Lipoxins attenuate renal fibrosis by inducing let-7c and suppressing TGFβR1'. Journal of the American Society of Nephrology, 24 (4):627-637.  
Brennan, EP,Nolan, KA,Borgeson, E,Gough, OS,McEvoy, CM,Docherty, NG,Higgins, DF,Murphy, M,Sadlier, DM,Ali-Shah, ST,Guiry, PJ,Savage, DA,Maxwell, AP,Martin, F,Godson, C (2013) 'Lipoxins Attenuate Renal Fibrosis by Inducing let-7c and Suppressing TGF beta R1'. J AM SOC NEPHROL, 24:627-637.  
Professor Fionnuala McAuliffe
Ciara A. McGowan, Fionnuala M. McAuliffe (2012) 'Maternal dietary patterns and associated nutrient intakes during each trimester of pregnancy'. Public Health Nutrition.  
Daniel Dowling, Fionnuala McAuliffe (2012) 'The molecular mechanisms of offspring effects from diabetic and obese pregnancy'. Obesity Facts.  
Higgins MF, Brazil D, Foley M, McAuliffe FM (2012) 'Maternal and fetal leptin in type 1 and type 2 diabetic pregnancies'. International journal of gynaecology and obstetrics: the official organ of the International Federation of Gynaecology and Obstetrics.  
Walsh C, Robson M, McAuliffe FM (2012) 'Operative delivery and adverse outcome'. Obstetrics & Gynecology.  
Treacy A, Higgins M, Kearney JM, McAuliffe FM, Mooney EE (2012) 'Delayed villous maturation of the placenta, quantitative assessment in different cohorts'. Pediatric And Developmental Pathology.  
Daniel Dowling, Niamh Corrigan, Paul Downey, Fionnuala McAuliffe (2012) 'Inflammatory protein expression in adolescent and adult offspring of type 1 diabetic mothers'. Birth Defects Res A Clin Mol Teratol .  
Nicola Maher, Fionnuala McAuliffe, Michael Foley (2012) 'The benefit of early treatment without rescreening in women with a history of gestational diabetes'. The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians .  
Martina Wallace, Evelyn Cottell, Michael J Gibney, Fionnuala M McAuliffe, Mary Wingfield, Lorraine Brennan (2012) 'Prediction of oocyte developmental potential and pregnancy outcome using metabolomics biomarkers'. Fertility and Sterility.  
Niamh Corrigan, Ann Treacy, Derek P. Brazil, Fionnuala M. McAuliffe (2012) 'Cardiomyopathy and diastolic dysfunction in the embryo and neonate of a type 1 diabetic mouse model'. Reproductive Sciences.  
Ciara A. McGowan, Sinead Curran, Fionnuala M. McAuliffe (2012) 'Relative validity of a food frequency questionnaire to assess nutrient intake during pregnancy'. Maternal & Child Nutrition.  
Jennifer M Walsh, Mark Kilbane, Ciara A McGowan, Malachi J McKenna, Fionnuala M McAuliffe (2012) 'Pregnancy in dark winters: Implications for fetal bone growth?'. Fertility and Sterility.  
Mark P Hehir, Henriette Laursen, Mary F Higgins, Donal J Brennan, Darran P O'Connor, Fionnuala M McAuliffe (2012) '. Ghrelin concentrations in maternal and cord blood of Type 1 diabetic and non-diabetic pregnancies at term'. Endocrine.  
Unterscheider J, Geary MP, Daly S, McAuliffe FM, Kennelly MM, Dornan J, Morrison JJ, Burke G, Francis A, Gardosi J, Malone FD. (2012) 'The customized fetal growth potential: a standard for Ireland'. Eur J Obstet Gynecol Reprod Biol.  
Jennifer M Walsh, Ciara A McGowan, Mark Kilbane, Malachi J McKenna, Fionnuala M McAuliffe (2012) 'Vitamin D, glucose homeostasis and fetal growth, a complex relationship'. Reproductive Sciences.  
Dr Amanda McCann
Aliu, E,Archambault, S,Arlen, T,Aune, T,Beilicke, M,Benbow, W,Bouvier, A,Buckley, JH,Bugaev, V,Cesarini, A,Ciupik, L,Collins-Hughes, E,Connolly, MP,Cui, W,Dickherber, R,Duke, C,Dumm, J,Dwarkadas, VV,Errando, M,Falcone, A,Federici, S,Feng, Q,Finley, JP,Finnegan, G,Fortson, L,Furniss, A,Galante, N,Gall, D,Gillanders, GH,Godambe, S,Gotthelf, EV,Griffin, S,Grube, J,Gyuk, G,Hanna, D,Holder, J,Hughes, G,Humensky, TB,Kaaret, P,Kargaltsev, O,Karlsson, N,Khassen, Y,Kieda, D,Krawczynski, H,Krennrich, F,Lang, MJ,Lee, K,Madhavan, AS,Maier, G,Majumdar, P,McArthur, S,McCann, A,Moriarty, P,Mukherjee, R,Nelson, T,de Bhroithe, AO,Ong, RA,Orr, M,Otte, AN,Park, N,Perkins, JS,Pohl, M,Prokoph, H,Quinn, J,Ragan, K,Reyes, LC,Reynolds, PT,Roache, E,Roberts, M,Saxon, DB,Schroedter, M,Sembroski, GH,Slane, P,Smith, (2013) 'DISCOVERY OF TeV GAMMA-RAY EMISSION FROM CTA 1 BY VERITAS'. The Astrophysical Journal, 764.  
Zhou, ZM,McCann, A,Litrup, E,Murphy, R,Cormican, M,Fanning, S,Brown, D,Guttman, DS,Brisse, S,Achtman, M (2013) 'Neutral Genomic Microevolution of a Recently Emerged Pathogen, Salmonella enterica Serovar Agona'. PLoS Genetics, 9.  
Dr Margaret McGee
O'Donovan DS, MacFhearraigh S, Whitfield J, Swigart LB, Evan GI, Mc Gee MM (2013) 'Sequential Cdk1 and Plk1 phosphorylation of protein tyrosine phosphatase 1B promotes mitotic cell death'. Cell Death & Disease.  
Dr Fiona McGillicuddy
Finucane OM, Reynolds CM, McGillicuddy FC, Roche HM (2012) 'Insights into the role of macrophage migration inhibitory factor in obesity and insulin resistance'. The Proceedings of the Nutrition Society, 71 (4):622-633.  
Börgeson E, McGillicuddy FC, Harford KA, Corrigan N, Higgins DF, Maderna P, Roche HM, Godson C (2012) 'Lipoxin A4 attenuates adipose inflammation'. FASEB Journal, 26 (10):4287-4294.  
Oliver, E., McGillicuddy, F. C., Harford, K. A., Reynolds, C. M., Phillips, C. M., Ferguson, J. F., Roche, H. M. (2012) 'Docosahexaenoic acid attenuates macrophage-induced inflammation and improves insulin sensitivity in adipocytes-specific differential effects between LC n-3 PUFA'. J Nutr Biochem, 23 (9):1192-200. Available Online  
Professor Paul McLoughlin
Lili Li*, Katherine Howell*, Michelle Sands, Mark Banahan, Stephen Frohlich, Simon C Rowan, Roisín Neary, Donal Ryan, Paul McLoughlin (2013) 'The α and Δ isoforms of CREB1 are required to maintain normal pulmonary vascular resistance'. PLoS ONE.  
McLoughlin P, Ward JP (2013) 'Hypoxic pulmonary hypertension; the load on the right ventricle'. Experimental Physiology, 98 (8):1244-1246.  
Frohlich S, Boylan J, McLoughlin P (2013) 'Hypoxia-induced inflammation in the lung: a potential therapeutic target in acute lung injury?'. American Journal of Respiratory Cell and Molecular Biology, 48 (3):271-279.  
Dr Tara McMorrow
H. Cassidy, J.Slyne, H. Frain, C. Slattery, M.P. Ryan, T. McMorrow * (2013) 'High-Throughput Proteomic Approaches to the Elucidation of Potential'. Proteome science, 1 (2):159-179.  
Sumayao R, McEvoy B, Martin-Martin N, McMorrow T, Newsholme P. (2013) 'Cystine dimethylester loading promotes oxidative stress and a reduction in ATP independent of lysosomal cystine accumulation in a human proximal tubular epithelial cell line'. Experimental Physiology, 98 (10):1505-1517.  
Radford R, Frain H, Ryan MP, Slattery C, McMorrow T. (2013) 'Mechanisms of chemical carcinogenesis in the kidneys'. International journal of molecular sciences, 14 (10):19416-19433.  
Limonciel A, Wilmes A, Aschauer L, Radford R, Bloch KM, McMorrow T, Pfaller W, van Delft JH, Slattery C, Ryan MP, Lock EA, Jennings P. (2012) 'Oxidative stress induced by potassium bromate exposure results in altered tight junction protein expression in renal proximal tubule cells'. Archives of Toxicology, 86 (11):1741-1751.  
Professor Walter McNicholas
Zaffaroni A, Kent B, O'Hare E, Heneghan C, Boyle P, O'Connell G, Pallin M, de Chazal P, McNicholas WT. (2013) 'Assessment of sleep-disordered breathing using a non-contact bio-motion sensor'. Journal of Sleep Research, 22:231-236.  
Levy P, McNicholas WT. (2013) 'Sleep apnoea and hypertension: time for recommendations'. European Respiratory Journal, 41:505-506.  
Parati G, Lombardi C, Hedner J, Bonsignore MR, Grote L, Tkacova R, Lévy P, Riha R, Bassetti C, Narkiewicz K, Mancia G, McNicholas WT; EU COST Action B26 members. (2013) 'Recommendations for the management of patients with obstructive sleep apnoea and hypertension'. European Respiratory Journal, 41:523-538.  
McSharry DG, Ryan S, Calverley P, Edwards JC, McNicholas WT. Respirology. 2012 Oct; 17(7):1119-24. (2012) 'Sleep quality in chronic obstructive pulmonary disease'. Respirology (Carlton, Vic.), 17:1119-1124.  
Professor Wim Meijer
Liu, L; Tharmalingam, T; Maischberger, E; Miranda CasoLuengo, R; Meijer, WG; Rudd, PM; Irwin, JA (2013) 'A HPLC-based glycoanalytical protocol allows the use of natural O-glycans derived from glycoproteins as substrates for glycosidase discovery from microbial culture'. Glycoconjugate journal, 30 (8):791-800.  
Sinigalliano, C.D., J. Erven, L.C. van de Werfhorst, B. Badgley, E. Balleste, J. Bartkowiak, A.B. Boehm, M. Byappanahalli, K.D. Goodwin, M. Gourmelon, J. Griffith, P.A. Holden, J. Jay, B. Layton, C. Lee, J. Lee, W.G. Meijer, R. Noble, M. Raith, H. Ryu, M/J. Sadowsky, A. Schriewer, D. Wanless, R. Whitman, S. Wuertz, J.W. Santo Domingo (2013) 'Multi-laboratory evaluations of the performance of Catellicoccus marimammalium PCR assays developed to target gull fecal sources'. Water Research, 47 (18):6883-6896.  
Schriewer, A; Goodwin, KD; Sinigalliano, CD; Cox, A; Wanless, D; Bartkowiak, J; Ebentier, DL; Hanley, KT; Ervin, J; Deering, LA; Shanks, OC; Peed, LA; Meijer, WG; Griffith, JF; SantoDomingo, J; Jay, JA; Holden, PA; Wuertz, S (2013) 'Performance evaluation of canine-associated Bacteroidales assays in a multi-laboratory comparison study'. Water Research, 47 (18):6909-6920.  
Raith, MR; Kelty, CA; Griffith, JF; Schriewer, A; Wuertz, S; Mieszkin, S; Gourmelon, M; Reischer, GH; Farnleitner, AH; Ervin, JS; Holden, PA; Ebentier, DL; Jay, JA; Wang, D; Boehm, AB; Aw, TG; Rose, JB; Balleste, E; Meijer, WG; Sivaganesan, M; Shanks, O (2013) 'Comparison of PCR and quantitative real-time PCR methods for the characterization of ruminant and cattle fecal pollution sources'. Water Research, 47 (18):6921-6928.  
Layton, BA; Cao, Y; Ebentier, DL; Hanley, K; Ballesté, E; Brandão, J; Byappanahalli, M; Converse, R; Farnleitner, AH; Gentry-Shields, J; Gidley, ML; Gourmelon, M; Lee, CS; Lee, J; Lozach, S; Madi, T; Meijer, WG; Noble, R; Peed, L; Reischer, GH; Rodrigues, R; Rose, JB; Schriewer, A; Sinigalliano, C; Srinivasan, S; Stewart, J; Van De Werfhorst, LC; Wang, D; Whitman, R; Wuertz, S; Jay, J; Holden, PA; Boehm, AB; Shanks, O; Griffith, JF (2013) 'Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study'. Water Research, 47 (18):6897-6908.  
Cauchard, S; Giguère, S; Venner, M; Muscatello, G; Cauchard, J; Cohen, ND; Haas, A; Hines, SA; Hondalus, MK; Horohov, DW; Meijer, WG; Prescott, JF; Vázquez-Boland, J (2013) 'Rhodococcus equi research 2008-2012: Report of the Fifth International Havemeyer Workshop'. Equine Veterinary Journal, 45:523-526.  
Maischberger, E; Cummins, CA; Fitzpatrick, E; Gallagher, ME; Worrall, S;Rousseau, K; Thornton, DJ; Meijer, WG; Miranda-CasoLuengo, R; Duggan, VE;Carrington, SD; Irwin, JA; Reid, CJ (2013) ''The expression of mucin genes and the presence of mucin gene products in the equine endometrium''. Research in Veterinary Science, 95 (1):169-175.  
Miranda-CasoLuengo AA, Miranda-CasoLuengo R, Lieggi NT, Luo H, Simpson JC, Meijer WG (2013) 'A real-time impedance based method to assess Rhodococcus equi virulence'. PLoS ONE, 8 (3).  
Miranda-CasoLuengo, R., G. Coulson, A. Miranda-CasoLuengo, J.A. Vazquez-Boland, M.K. Hondalus and W.G. Meijer (2012) 'The hydroxamate siderophore rhequichelin is required for virulence of the pathogenic actinomycete Rhodococcus equi'. Infection and Immunity, 80 (12):4106-4114.  
Professor Grace V T Mulcahy
Stuart P., Golden O., Zintl A., DeWaal, T. Mulcahy G., McCarthy E., Lawton C. (2013) 'A coprological survey of parasites of wild carnivores in Ireland'. Parasitology Research, 112:3587-3593.  
Halova, D,Mulcahy, G,Rafter, P,Turcekova, L,Grant, T,de Waal, T (2013) 'Toxoplasma gondii in Ireland: Seroprevalence and Novel Molecular Detection Method in Sheep, Pigs, Deer and Chickens'. Zoonoses and Public Health, 60:168-173.  
Stuart, P,Zintl, A,De Waal, T,Mulcahy, G,Hawkins, C,Lawton, C (2013) 'Investigating the role of wild carnivores in the epidemiology of bovine neosporosis'. Parasitology, 140:296-302.  
Dr Evelyn Murphy
JP McMorrow, D Crean, M Gogarty, A Smyth, M Connolly, E Cummins, D Veale, U Fearon, PP Tak, O Fitzgerald, and EP Murphy (2013) 'Tumour Necrosis Factor inhibition modulates Thrombospondin-1 expression in human inflammatory joint disease through altered NR4A2 activity'. American Journal of Pathology, 183 (4):1243-1257.  
Ryan SM, McMorrow J, Umerska A, Patel HB, Kornerup KN, Tajber L, Murphy EP, Perretti M, Corrigan OI, Brayden DJ (2013) 'An intra-articular salmon calcitonin-based nanocomplex reduces experimental inflammatory arthritis'. Journal of controlled release: official journal of the Controlled Release Society, 167 (2):120-129.  
Dr Keith Murphy
Murphy RP, Murphy KJ, Pickering M (2013) 'The development of myelin repair agents for treatment of multiple sclerosis: Progress and challenges'. Bioengineered, 4 (3):140-146.  
Borlikova GG, Trejo M, Mably AJ, Mc Donald JM, Frigerio CS, Regan CM, Murphy KJ, Masliah E, Walsh DM (2013) 'Alzheimer brain-derived amyloid beta-protein impairs synaptic remodeling and memory consolidation'. Neurobiology of Aging, 34 (5):1315-1327.  
Lukasz B, O'Sullivan NC, Loscher JS, Pickering M, Regan CM, Murphy KJ (2013) 'Peripubertal viral-like challenge and social isolation mediate overlapping but distinct effects on behaviour and brain interferon regulatory factor 7 expression in the adult Wistar rat'. Brain, behavior, and immunity, 27 (1):71-79.  
Dr Jarlath Nally
Jorge Gutierrez, James O'Donovan, Aisling Proctor, Colm Brady, Patricia X. Marques, Sheila Worrall, Jarlath E. Nally, Maire McElroy, Hugh Bassett, John Fagan, Stephen Maley, David Buxton, Donal Sammin, Bryan K. Markey (2012) 'Application of quantitative real-time polymerase chain reaction for the diagnosis of toxoplasmosis and enzootic abortion of ewes'. Journal of veterinary diagnostic investigation: official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc, 24 (5):845-853.  
Dr Jens Erik Nielsen
Farrell D, Nielsen JE (2012) 'DataPipeline: Automated importing and fitting of large amounts of biophysical data'. Journal of Computational Chemistry, 33 (29):2357-2362.  
Dr Peter O'Brien
S Papakonstantinou, I Berzina, A Lawlor, EJ O'Neill, PJ O'Brien (2013) 'Rapid, effective and user-friendly immunophenotyping of canine lymphoma using a personal flow cytometer'. The Irish Veterinary Journal, 66:1-14.  
Silvestrini, P; Piviani, M; Alberola, J; Rodríguez?Cortés, A; Planellas, M; Roura, X; O'Brien, PJ; Pastor, J (2012) 'Serum cardiac troponin I concentrations in dogs with leishmaniasis: correlation with age and clinicopathologic abnormalities'. Veterinary Clinical Pathology, 41:568-574.  
Mohan, H.M., Maher, S., Collins, D., Walsh, E.G., Winter, D.C., O'Brien, P.J., Brayden D.J., & Baird, A.W. (2012) 'The mycotoxin, patulin, increases colonic epithelial permeability. Food and Chemical Toxicology'. Food Chemical Toxicology, 50 (11):4097-4102.  
Koutinas CK, Mylonakis ME, O'Brien PJ, Leontides L, Siarkou VI, Breitschwerdt EB, Koutinas AF (2012) 'Serum cardiac troponin I concentrations in naturally occurring myelosuppressive and non-myelosuppressive canine monocytic ehrlichiosis'. Veterinary Journal, 194 (2):259-261.  
Professor Ronan O'Connell
Beyond TME Collaborative (2013) 'Consensus statement on the multidisciplinary management of patients with recurrent and primary rectal cancer beyond total mesorectal excision planes'. The British journal of surgery, 100 (8):1009-1014.  
Rogers AC, Gibbons D, Hanly AM, Hyland JM, O'Connell PR, Winter DC, Sheahan K (2013) 'Prognostic significance of tumor budding in rectal cancer biopsies before neoadjuvant therapy'. Modern Pathology.  
Hanly AM, Ryan EM, Rogers AC, McNamara DA, Madoff RD, Winter DC; on behalf of the MERRION Study Group. (2013) 'Multicenter Evaluation of Rectal cancer ReImaging pOst Neoadjuvant (MERRION) Therapy'. Annals of Surgery.  
Burke JP, Doherty GA, O'Connell PR (2013) 'A survey of current practices used to maintain surgically induced remission following intestinal resection for Crohn's disease'. Colorectal disease: the official journal of the Association of Coloproctology of Great Britain and Ireland.  
Burke JP, Doherty GA, O'Connell PR (2013) 'A survey of current practices used to maintain surgically induced remission following intestinal resection for Crohn's disease'. International Journal of Colorectal Disease, 28 (8):1073-1079.  
Kavanagh DO, Carter MC, Keegan D, Doherty G, Smith MJ, Hyland JM, Mulcahy H, Sheahan K, O' Connell PR, O' Donoghue DP, Winter DC (2013) 'Management of colorectal cancer in patients with inflammatory bowel disease'. Techniques in coloproctology .  
Evers, J,Buffini, M,Craven, S,O'Connell, PR,Jones, JFX (2013) 'Is there a nitrergic modulation of the rat external anal sphincter?'. Experimental Physiology, 98:397-404.  
Kavanagh, DO,Nolan, B,Judge, C,Hyland, JMP,Mulcahy, HE,O'Connell, PR,Winter, DC,Doherty, GA (2013) 'A Comparative Study of Short- and Medium-term Outcomes Comparing Emergent Surgery and Stenting as a Bridge to Surgery in Patients With Acute Malignant Colonic Obstruction'. Diseases Of The Colon & Rectum, 56:433-440.  
O'Connell PR. (2013) 'Sacral nerve stimulation for constipation'. The British journal of surgery, 100 (2):181-181.  
Kennelly RP, Rogers AC, Winter DC; Abdominoperineal Excision Study Group. (2013) 'Multicentre study of circumferential margin positivity and outcomes following abdominoperineal excision for rectal cancer'. The British journal of surgery, 100 (1):160-166.  
Larkin JO, O'Connell PR (2012) 'Multivisceral resection for T4 or recurrent colorectal cancer'. Digestive Diseases, 30 (Supp 2):96-101.  
Dr John O'Connor
Corcoran, A., OConnor J.J. (2013) 'Hypoxia inducible factor signaling mechanisms in the central nervous system'. Acta Physiologica Scandinavica, 208 (4):298-310.  
O'Connor JJ (2013) 'Targeting TNF-α in hypoxia and synaptic signaling'. Irish Journal of Medical Science, 182 (2):157-162.  
Fanning RA, McMorrow JP, Campion DP, Carey MF, O'Connor JJ (2012) 'Opioid mediated activity and expression of mu and delta opioid receptors in isolated human term non-laboring myometrium'. European Journal of Pharmacology, 689 (1-3):170-177.  
Dr Kevin O'Connor
Narancic T, Radivojevic J, Jovanovic P, Francuski D, Bigovic M, Maslak V, Savic V, Vasiljevic B, O'Connor KE, Nikodinovic-Runic J (2013) 'Highly efficient Michael-type addition of acetaldehyde to β-nitrostyrenes by whole resting cells of Escherichia coli expressing 4-oxalocrotonate tautomerase'. Bioresource Technology, 142:462-468.  
Molloy S, Nikodinovic-Runic J, Martin LB, Hartmann H, Solano F, Decker H, O'Connor KE. (2013) 'Engineering of a bacterial tyrosinase for improved catalytic efficiency towards D-tyrosine using random and site directed mutagenesis approaches'. Biotechnology and Bioengineering, 110 (7):1848-1857.  
Brooks SJ, Nikodinovic J, Martin L, Doyle EM, O'Sullivan T, Guiry PJ, Coulombel L, Li Z, O'Connor KE. (2013) 'Production of a chiral alcohol, 1-(3,4-dihydroxyphenyl) ethanol, by mushroom tyrosinase'. Biotechnology Letters, 35 (5):779-783.  
O'Connor S, Szwej E, Nikodinovic-Runic J, O'Connor A, Byrne AT, Devocelle M, O'Donovan N, Gallagher WM, Babu R, Kenny ST, Zinn M, Zulian QR, O'Connor KE (2013) 'The anti-cancer activity of a cationic anti-microbial peptide derived from monomers of polyhydroxyalkanoate'. Biomaterials, 34 (11):2710-2718.  
Babu RP, O'Connor K, Seeram R. (2013) 'Current progress on bio-based polymers and their future trends'. Progress in Biomaterials, 2 (8).  
Nikodinovic-Runic J, Guzik M, Kenny ST, Babu R, Werker A, O Connor KE (2013) 'Carbon-rich wastes as feedstocks for biodegradable polymer (polyhydroxyalkanoate) production using bacteria'. Advances In Applied Microbiology, Vol 62, 84:139-200.  
Professor Stefan Oscarson
Matei, E,Andre, S,Glinschert, A,Infantino, AS,Oscarson, S,Gabius, HJ,Gronenborn, AM (2013) 'Fluorinated Carbohydrates as Lectin Ligands: Dissecting Glycan-Cyanovirin Interactions by Using F-19 NMR Spectroscopy'. Chemistry-A European Journal, 19:5364-5374.  
Dr Francesca Paradisi
Alsafadi, D; Paradisi, F (2013) 'Covalent immobilization of alcohol dehydrogenase (ADH2) from Haloferax volcanii: how to maximize activity and optimize performance of halophilic enzymes'. Molecular Biotechnology.  
Quaglia, D; Pori, M; Galletti, P; Emer, E; Paradisi, F; Giacomini, D (2013) 'His-tagged Horse Liver Alcohol Dehydrogenase: Immobilization and application in the bio-based enantioselective synthesis of (S)-arylpropanols'. Process Biochemistry, 48:810-818.  
O'Reilly, E; Pes, L; Ortin, Y; Mller-Bunz, H; Paradisi, F (2013) 'Synthesis of a conformationally constrained delta-amino acid building block'. Amino Acids, 44:511-518.  
Timpson, L; Liliensiek, A; Alsafadi, D; Sharkey, MA; Liddell, S; Allers, T; Paradisi, F (2013) 'A comparison of two novel alcohol dehydrogenase enzymes (ADH1 and ADH2) from the extreme halophile Haloferax volcanii'. Applied Microbiology and Biotechnology, 97:195-203.  
Alsafadi, D; Paradisi, F (2013) 'Effect of organic solvents on the activity and stability of halophilic alcohol dehydrogenase (ADH2) from Haloferax volcanii'. Extremophiles, 17:115-122.  
Hackenberg, F; Lally, G; Mller-Bunz, H; Paradisi, F; Quaglia, D; Streciwilk, W; Tacke, M (2013) 'Synthesis and biological evaluation of N-heterocyclic carbene-silver(I) acetate complexes derived from 4,5-ditolyl-imidazole'. Inorganica Chimica Acta, 395:135-144.  
Quaglia, D; Irwin, JA; Paradisi, F (2012) 'Horse Liver Alcohol Dehydrogenase: new perspectives for an old enzyme'. Molecular Biotechnology, 52:244-250.  
Sharkey, MA; O'Gara, JP; Gordon, SV; Hackenberg, F; Healy, C; Paradisi, F; Patil, S; Schaible, B; Tacke, M (2012) 'Investigations into the Antibacterial Activity of the Silver-Based Antibiotic Drug Candidate SBC3'. Antibiotics, 1:25-28.  
Hackenberg, F; Lally, G; Mller-Bunz, H; Paradisi, F; Quaglia, D; Streciwilk, W; Tacke, M (2012) 'Novel symmetrically p-benzyl-substituted 4,5-diaryl-imidazole N-heterocyclic carbene-silver(I) acetate complexes - synthesis and biological evaluation'. Journal of Organometallic Chemistry, 717:123-134.  
Balducci, D; Conway, PA; Sapuppo, G; Mller-Bunz, H; Paradisi, F (2012) 'Novel approach to the synthesis of aliphatic and aromatic alpha-keto acids'. Tetrahedron, 68:7374-7379.  
Dr Andrew Phillips
Dominique F. Schreiber, Crystal O'Connor, Christian Grave, Yannick Ortin, Helge Mller-Bunz, and Andrew D. Phillips (2012) 'Application of β-Diketiminato Arene-Substituted Ru(II) Complexes in Highly Efficient H2 Dehydrocoupling of Amine Boranes'. Applied Catalysis, 2:2505-2511.  
Professor Ron Pinhasi
von Cramon-Taubadel, N; Stock, JT; Pinhasi, R (2013) 'Skull and limb morphology differentially track population history and environmental factors in the transition to agriculture in Europe'. Proceedings of the Royal Society, Series B, doi: 10.1098/rspb.2013.1337.  
Ottoni C, Flink LG, Evin A, Geõrg C, Cupere BD, Van Neer W, Bartosiewicz L, Linderholm A, Barnett R, Peters J, Ronny Decorte, R, Waelkens M, Vanderheyden N, Ricaut F-X, Hoelzel AR, Mashkour M, Karimlu AFM, Seno S, Daujat J, Brock F, Pinhasi R, Hongo H, Perez-Enciso M, Rasmussen M, Frantz L, Megens F-J. Crooijmans R, Groenen M, Arbuckle B, Benecke N, Vidarsdottir US, Burger J, Cucchi T, Dobney K, Larson G (2013) 'Pig domestication and human-mediated dispersal in western Eurasia revealed through ancient DNA and geometric morphometrics'. Molecular Biology and Evolution.  
Pinhasi, R; Nioradze, M; Tushabramishvilli, N; Lordkipanidze, D; Pleurdeau, D; Moncel, M-H; Adler, DS; Stringer, S; Higham, TFG (2012) 'New chronology for the Middle Palaeolithic of the Southern Caucasus suggests early demise of Neanderthals in this region'. Journal of Human Evolution, Early View.   
Moncel, M-H; Pleurdeau, D; Tushubramishvili, N; Yeshurun, R; Agapishvili, T;Pinhasi, R; Higham, T (2012) 'Preliminary results from the new excavations of the Middle and Upper Palaeolithic levels at Ortvale Klde-North Chamber (South Caucasus Georgia)'. Quaternary International, Early View.  
Professor Ciaran Regan
Ring RM, Regan CM (2013) 'Captodiamine, a putative antidepressant, enhances hypothalamic BDNF expression in vivo by synergistic 5-HT2c receptor antagonism and sigma-1 receptor agonism'. Journal of psychopharmacology (Oxford, England).  
Lukasz B, O'Sullivan NC, Loscher JS, Pickering M, Regan CM, Murphy KJ (2013) 'Peripubertal viral-like challenge and social isolation mediate overlapping but distinct effects on behaviour and brain interferon regulatory factor 7 expression in the adult Wistar rat'. Brain, behavior, and immunity, 27 (1):71-79.  
Borlikova GG, Trejo M, Mably AJ, Mc Donald JM, Frigerio CS, Regan CM, Murphy KJ, Masliah E, Walsh DM (2013) (2013) 'Alzheimer brain-derived amyloid β-protein impairs synaptic remodeling and memory consolidation'. Neurobiology of Aging, 34:1315-1327.  
Foley AF, Gannon S, Rombach-Mullan N, Prendergast A, Barry C, Cassidy AW, Regan CM (2012) 'Class I histone deacetylase inhibition ameliorates social cognition and cell adhesion molecule plasticity deficits in a rodent model of autism spectrum disorders'. Neuropharmacology.  
Professor Helen Roche
Phillips CM, Tierney AC, Perez-Martinez P, Defoort C, Blaak EE, Gjelstad IM, Lopez-Miranda J, Kiec-Klimczak M, Malczewska-Malec M, Drevon CA, Hall W, Lovegrove JA, Karlstrom B, Risérus U, Roche HM. (2013) 'Obesity and Body Fat Classification in the Metabolic Syndrome: Impact on Cardiometabolic Risk Metabotype'. Obesity.  
Camargo A, Rangel-Zúñiga OA, Peña-Orihuela P, Marín C, Pérez-Martínez P, Delgado-Lista J, Gutierrez-Mariscal FM, Malagón MM, Roche HM, Tinahones FJ, Lopez-Miranda J. (2013) 'Postprandial changes in the proteome are modulated by dietary fat in patients with metabolic syndrome'. Journal of Nutritional Biochemistry, 24:318-324.  
Morris C, Gibney M, Roche H, Ryan M, Grada O, De Vito G, Gibney E, Brennan L (2013) 'The relationship between aerobic fitness level and metabolic profiles in healthy adults'. Molecular Nutrition and Food Research.  
Perez-Martinez P, Garcia-Rios A, Delgado-Lista J, Gjelstad IM, Gibney J, Kie?-Wilk B, Camargo A, Helal O, Karlström B, Blaak EE, Hall W, Risérus U, Dembi?ska-Kie? A, Defoort C, Saris WH, Lovegrove JA, Drevon CA, Roche HM, Lopez-Miranda J. (2013) 'Gene-nutrient interactions on the phosphoenolpyruvate carboxykinase influence insulin sensitivity in metabolic syndrome subjects'. Clinical Nutrition, Au; 32(4):630-5:630-635.  
Camargo A, Meneses ME, Perez-Martinez P, Delgado-Lista J, Jimenez-Gomez Y, Cruz-Teno C, Tinahones FJ, Paniagua JA, Perez-Jimenez F, Roche HM, Malagon MM, Lopez-Miranda J (2013) 'Dietary fat differentially influences the lipids storage on the adipose tissue in metabolic syndrome patients'. The Journal of nutrition.  
Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L (2013) 'Identification of differential responses to an oral glucose tolerance test in healthy adults'. PLoS ONE, 8 (8).  
McAllan L, Keane D, Schellekens H, Roche HM, Korpela R, Cryan JF, Nilaweera KN. (2013) 'Whey protein isolate counteracts the effects of a high-fat diet on energy intake and hypothalamic and adipose tissue expression of energy balance-related genes'. British Journal of Nutrition, 4:1-13.  
Yubero-Serrano EM, Delgado-Lista J, Peña-Orihuela P, Perez-Martinez P, Fuentes F, Marin C, Tunez I, Tinahones FJ, Perez-Jimenez F, Roche HM, Lopez-Miranda J (2013) 'Oxidative stress is associated with the number of components of metabolic syndrome: LIPGENE study'. Experimental & molecular medicine, 45.  
Morine MJ, Toomey S, McGillicuddy FC, Reynolds CM, Power KA, Browne JA, Loscher C, Mills KH, Roche HM. (2013) 'Network analysis of adipose tissue gene expression highlights altered metabolic and regulatory transcriptomic activity in high-fat-diet-fed IL-1RI knockout mice'. Journal of Nutritional Biochemistry, 24:788-799.  
Phelan, N,O'Connor, A,Tun, TK,Correia, N,Boran, G,Roche, HM,Gibney, J (2013) 'Leucocytosis in women with polycystic ovary syndrome (PCOS) is incompletely explained by obesity and insulin resistance'. Clinical Endocrinology, 78:107-113.  
Ryan, MF,Grada, CO,Morris, C,Segurado, R,Walsh, MC,Gibney, ER,Brennan, L,Roche, HM,Gibney, MJ (2013) 'Within-person variation in the postprandial lipemic response of healthy adults'. American Journal of Clinical Nutrition, 97:261-267.  
Reynolds, CM,Toomey, S,McBride, R,McMonagle, J,Morine, MJ,Belton, O,Moloney, AP,Roche, HM (2013) 'Divergent effects of a CLA-enriched beef diet on metabolic health in ApoE(-/-) and ob/ob mice'. J Nutr Biochem, 24:401-411.  
McArdle MA, Finucane OM, Connaughton RM, McMorrow AM, Roche HM (2013) 'Mechanisms of obesity-induced inflammation and insulin resistance: insights into the emerging role of nutritional strategies'. Frontiers in endocrinology, 4.  
Finucane OM, Reynolds CM, McGillicuddy FC, Roche HM (2012) 'Insights into the role of macrophage migration inhibitory factor in obesity and insulin resistance'. The Proceedings of the Nutrition Society, 71 (4):622-633.  
Borgeson, E., McGillicuddy, F. C., Harford, K. A., Corrigan, N., Higgins, D. F., Maderna, P., Roche, H. M., Godson, C. (2012) 'Lipoxin A4 attenuates adipose inflammation'. FASEB J, 26 (10):4287-94. Available Online  

Allott EH, Oliver E, Lysaght J, Gray SG, Reynolds JV, Roche HM, Pidgeon GP (2012) 'The SGBS cell strain as a model for the in vitro study of obesity and cancer'. Clinical & translational oncology: official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico, 14 (10):774-782.  
Oliver E, McGillicuddy FC, Harford KA, Reynolds CM, Phillips CM, Ferguson JF, Roche HM (2012) 'Docosahexaenoic acid attenuates macrophage-induced inflammation and improves insulin sensitivity in adipocytes-specific differential effects between LC n-3 PUFA'. The Journal of nutrition, 23 (9):1192-1200.  
Dr Noreen Sheehy
McCabe A, Hashimoto K, Hall WW, Sheehy N. (2013) 'The Four and a Half LIM family are novel interactants of the HTLV-1 oncoprotein Tax1'. Journal of Virology, 87 (13).  
Marban,C;Bukong,TN;Hall,WW; Sheehy,N (2012) 'Interplay between the HTLV-2 Tax and APH-2 proteins in the regulation of the AP-1 pathway'. Retrovirology, 9:98. doi: 10.1186/1742-4690-9-98 .  
Professor Denis Shields
O'Brien, K. T., Haslam, N. J., Shields, D. C. (2013) 'SLiMScape: a protein short linear motif analysis plugin for Cytoscape'. BMC Bioinformatics, 14. Available Online  
Pushker, R., Mooney, C., Davey, N. E., Jacque, J. M., Shields, D. C. (2013) 'Marked variability in the extent of protein disorder within and between viral families'. PLoS One, 8 (4). Available Online  
Khan, W., Duffy, F., Pollastri, G., Shields, D. C., Mooney, C. (2013) 'Predicting binding within disordered protein regions to structurally characterised peptide-binding domains'. PLoS One, 8 (9). Available Online  
Mooney, C., Cessieux, A., Shields, D. C., Pollastri, G. (2013) 'SCL-Epred: a generalised de novo eukaryotic protein subcellular localisation predictor'. Amino Acids, 45 (2):291-9. Available Online  
O'Brien, R. P., Phelan, P. J., Conroy, J., O'Kelly, P., Green, A., Keogan, M., O'Neill, D., Jennings, S., Traynor, C., Casey, J., McCormack, M., Conroy, R., Chubb, A., Ennis, S., Shields, D. C., Cavalleri, G. L., Conlon, P. J. (2013) 'A genome-wide association study of recipient genotype and medium-term kidney allograft function'. Clin Transplant, 27 (3):379-87. Available Online  
den Hoed, M., Eijgelsheim, M., Esko, T., Brundel, B. J., Peal, D. S., Evans, D. M., Nolte, I. M., Segre, A. V., Holm, H., Handsaker, R. E., Westra, H. J., Johnson, T., Isaacs, A., Yang, J., Lundby, A., Zhao, J. H., Kim, Y. J., Go, M. J., Almgren, P., Bochud, M., Boucher, G., Cornelis, M. C., Gudbjartsson, D., Hadley, D., van der Harst, P., Hayward, C., den Heijer, M., Igl, W., Jackson, A. U., Kutalik, Z., Luan, J., Kemp, J. P., Kristiansson, K., Ladenvall, C., Lorentzon, M., Montasser, M. E., Njajou, O. T., O'Reilly, P. F., Padmanabhan, S., St Pourcain, B., Rankinen, T., Salo, P., Tanaka, T., Timpson, N. J., Vitart, V., Waite, L., Wheeler, W., Zhang, W., Draisma, H. H., Feitosa, M. F., Kerr, K. F., Lind, P. A., Mihailov, E., Onland-Moret, N. C., Song, C., Weedon, M. N., Xie, W., Yengo, L. (2013) 'Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders'. Nat Genet, 45 (6):621-31. Available Online  
Mooney, C., Haslam, N. J., Holton, T. A., Pollastri, G., Shields, D. C. (2013) 'PeptideLocator: prediction of bioactive peptides in protein sequences'. Bioinformatics, 29 (9):1120-6. Available Online  
Vijayakumar, V., Guerrero, A. N., Davey, N., Lebrilla, C. B., Shields, D. C., Khaldi, N. (2012) 'EnzymePredictor: a tool for predicting and visualizing enzymatic cleavages of digested proteins'. J Proteome Res, 11 (12):6056-65. Available Online  
Davey, N. E., Cowan, J. L., Shields, D. C., Gibson, T. J., Coldwell, M. J., Edwards, R. J. (2012) 'SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions'. Nucleic Acids Research, 40 (21):10628-41. Available Online  
Sudol, M., Shields, D. C., Farooq, A. (2012) 'Structures of YAP protein domains reveal promising targets for development of new cancer drugs'. Seminars in Cell and Developmental Biology, 23 (7):827-33. Available Online  
Haslam, N. J., Shields, D. C. (2012) 'Peptide-binding domains: are limp handshakes safest?'. Sci Signal, 5 (243). Available Online  
Professor Jeremy Simpson
Bexiga MG, Kelly C, Dawson KA, Simpson JC (2013) 'RNA interference-mediated inhibition of apoptosis fails to prevent cationic nanoparticle-induced cell death in cultured cells'. Nanomedicine, in press.  
Stadler C, Rexhepaj E, Singan, VR, Murphy RF, Pepperkok R, Uhlen M, Simpson JC, Lundberg E (2013) 'Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells'. Nature Methods, 10:315-323.  
Miranda-CasoLuengo AA, Miranda-CasoLuengo R, Lieggi NT, Luo H, Simpson JC, Meijer WG (2013) 'A real-time impedance based method to assess Rhodococcus equi virulence'. PLoS ONE, 8 (3).  
McCarthy JM, Franke M, Resenberger UK, Waldron S, Simpson JC, Tatzelt J, Appelhans D, Rogers MS (2013) 'Anti-prion drug mPPIg5 inhibits PrPC conversion to PrPSc'. PLoS ONE, 8 (1).  
Singan VR, Handzic K, Simpson JC (2012) 'Quantitative image analysis approaches for probing Rab GTPase localization and function in mammalian cells'. Biochemical Society Transactions, 40 (6):1389-1393.  
Yi P, Higa A, Taouji S, Bexiga MG, Marza E, Arma D, Castain C, Le Bail B, Simpson JC, Rosenbaum J, Balabaud C, Bioulac-Sage P, Blanc JF, Chevet E (2012) 'Sorafenib-Mediated Targeting of the AAA+ ATPase p97/VCP Leads to Disruption of the Secretory Pathway, Endoplasmic Reticulum Stress, and Hepatocellular Cancer Cell Death'. Molecular Cancer Therapeutics, 11:2610-2620.  
Roth SD, Schttrumpf J, Milanov P, Abriss D, Ungerer C, Quade-Lyssy P, Simpson JC, Pepperkok R, Seifried E, Tonn T. (2012) 'Chemical Chaperones Improve Protein Secretion and Rescue Mutant Factor VIII in Mice with Hemophilia A'. PLoS ONE, 7 (9).  
Varela JA, Bexiga MG, Aberg C, Simpson JC, Dawson KA (2012) 'Quantifying size-dependent interactions between fluorescently labeled polystyrene nanoparticles and mammalian cells'. Journal Of Nanobiotechnology, 10 (1):39.1-39.6.  
Dr Albert Smolenski
Tilley DO, Arman M, Smolenski A, Cox D, O'Donnell JS, Douglas CW, Watson SP, Kerrigan SW (2013) 'Glycoprotein Iba and FcgRIIa play key roles in platelet activation by the colonizing bacterium, Streptococcus oralis'. Journal of Thrombosis and Haemostasis, 11 (5):941-950.  
Hampson A, O'Connor A, Smolenski A (2013) 'Synaptotagmin-like protein 4 and rab8 interact and increase dense granule release in platelets'. Journal of Thrombosis and Haemostasis, 11:161-168.  
Dr Matthias Tacke
Walther, W; Fichtner, I; Deally, A; Hogan, M; Tacke, M (2013) 'The Activity of Titanocene T Against Xenografted CAKI-1 Tumors'. Letters in Drug Design & Discovery, 10 (5):375-381. Available Online  
Schur, J; Manna, CM; Deally, A; Köster, R; Tacke, M; Tshuva, EY; Ott, I (2013) 'A Comparative Chemical-Biological Evaluation of Titanium(IV) Complexes with Salan or Cyclopentadienyl Ligands'. Journal of the Chemical Society-Chemical Communications, 49:4785-4787. Available Online  
F. Hackenberg, G. Lally, H. Mller-Bunz, F. Paradisi, D. Quaglia, W. Streciwilk, M. Tacke (2013) 'Synthesis and biological evaluation of N-heterocyclic carbene-silver(I) acetate complexes derived from 4,5-ditolyl-imidazole'. Inorganica Chimica Acta, 395:135-144. Available Online  
M. A. Sharkey, J. P. O'Gara, S. V. Gordon, F. Hackenberg, C. Healy, F. Paradisi, S. Patil, B. Schaible, M. Tacke (2012) 'Investigations into the Antibacterial Activity of the Silver-Based Antibotic Drug Candidate SBC3'. Antibiotics, 1:25-28. Available Online  
F. Hackenberg, G. Lally, H. Mller-Bunz, F. Paradisi, D. Quaglia, W. Streciwilk, M. Tacke (2012) 'Novel symmetrically p-benzyl-substituted 4,5-diaryl-imidazole N-heterocyclic carbene-silver(I) acetate complexes, synthesis and biological evaluation'. Journal of Organometallic Chemistry, 717:123-134. Available Online  
I. Fichtner, D. Behrens, J. Cinatl jr., M. Michaelis, L. C. Sanders, R. Hilger, B. N. Kennedy, A. L. Reynolds, F. Hackenberg, G. Lally, Susan Quinn, I. McRae, M. Tacke (2012) 'In Vitro and In Vivo Investigations into the Carbene Silver Acetate Anticancer Drug Candidate SBC1'. Letters in Drug Design & Discovery, 9 (9):815-822. Available Online  
A. Deally, F. Hackenberg, G. Lally, H. Mller-Bunz, M. Tacke; (2012) 'Synthesis and preliminary cytotoxicity studies of achiral silyl-substituted titanocene dichloride derivatives'. Organometallics, 31 (16):5782-5790. Available Online  
U. Olszewski, A. Deally, M. Tacke, G. Hamilton (2012) 'Alterations of Phosphoproteins in NCI-H526 Small Cell Lung Cancer Cells involved in Cytotoxicity of Cisplatin and Titanocene Y'. Neoplasia, 14 (9):813-822. Available Online  
Professor Cormac Taylor
Nguyen LK, Cavadas MA, Scholz CC, Fitzpatrick SF, Bruning U, Cummins EP, Tambuwala MM, Manresa MC, Kholodenko BN, Taylor CT, Cheong A (2013) 'A dynamic model of the hypoxia-inducible factor 1-alpha (HIF-1a) network'. Journal of Cell Science.  
Lenihan, CR,Taylor, CT (2013) 'The impact of hypoxia on cell death pathways'. Biochemical Society Transactions, 41:657-663.  
Cummins, EP,Doherty, GA,Taylor, CT (2013) 'Hydroxylases as therapeutic targets in inflammatory bowel disease'. LAB INVEST, 93:378-383.  
Schaible, B,McClean, S,Selfridge, A,Broquet, A,Asehnoune, K,Taylor, CT,Schaffer, K (2013) 'Hypoxia Modulates Infection of Epithelial Cells by Pseudomonas aeruginosa'. PLoS ONE, 8.  
Tannahill, GM,Curtis, AM,Adamik, J,Palsson-McDermott, EM,McGettrick, AF,Goel, G,Frezza, C,Bernard, NJ,Kelly, B,Foley, NH,Zheng, L,Gardet, A,Tong, Z,Jany, SS,Corr, SC,Haneklaus, M,Caffrey, BE,Pierce, K,Walmsley, S,Beasley, FC,Cummins, E,Nizet, V,Whyte, M,Taylor, CT,Lin, H,Masters, SL,Gottlieb, E,Kelly, VP,Clish, C,Auron, PE,Xavier, RJ,O'Neill, LAJ (2013) 'Succinate is an inflammatory signal that induces IL-1 beta through HIF-1 alpha'. Nature, 496.  
Professor Emma C Teeling
Hughes G.M., Gang L., Murphy W.J., Higgins D.G., Teeling E.C. (2013) 'Using Illumina Next Generation Sequencing Technologies to Sequence Multigene Families in de novo Species'. Molecular Ecology Resources, 13 (3):510-512.  
J. Kirwan, M. Bekaert, J. M. Commins, K. T. J. Davies, S. J. Rossiter, E. C. Teeling (2013) 'A Phylomedicine Approach to Understanding the Evolution of Auditory Sensory Perception and Disease in Mammals'. Evolutionary Applications, 6 (3):412-422.  
Lundy M.G., Harrison A., Buckley D.J., Boston E.S., Scott D.D., Teeling E.C.,Montgomery W.I., Houghton J.D.R. (2013) 'Prey field switching based on preferential behaviour can induce Levy flights'. Journal of the Royal Society, Interface / the Royal Society, 10 (78).  
S. J. Puechmaille & E. C. Teeling (2013) 'Non-invasive genetics can help find rare species: a case study with Rhinolophus mehelyi (Rhinolophidae: Chiroptera)'. Mammalia.  
G. Jones, E. C. Teeling, S. J. Rossiter (2013) 'From the ultrasonic to the infrared: molecular evolution and the sensory biology of bats'. Frontiers in Integrative Physiology, 4.  
S. E. Dool, S. J. Puechmaille, C. Dietz, J. Juste, C. Ibáñez, P. Hulva, S. G. Roué, E. J. Petit, G. Jones, S. J. Rossiter, E. C. Teeling (2013) 'Phylogeography and postglacial recolonisation of Europe by Rhinolophus hipposideros: evidence from multiple genetic markers'. Molecular Ecology, 22 (15):4055-4070.  
D. D. Scott, S. Fitzpatrick, D. A. Bailie, E. S. M. Boston, M. G. Lundy, D. J. Buckley, E. C. Teeling, W. I. Montgomery, P. A. Prodöhl (2013) 'Isolation and characterization of eight polymorphic microsatellite loci for Natterer's bat, Myotis nattereri (Vespertilionidae, Chiroptera)'. Conservation Genetics Resources, 5:643-645.  
Springer, M.S, Meredith, R.B., Teeling, E.C., Murphy, W.J. (2013) 'Technical Comment on The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals'. Science, 9:613-603.  
E.C. Teeling, S.B. Hedges (2013) 'Making the impossible possible: rooting the tree of placental mammals'. Molecular Biology and Evolution, 30 (9):1999-2000.  
Lundy, M.G.,Harrison, A., Buckley, D.J., Boston, E.S., Scott, D.D., Teeling, E.C., Montgomery, W.I., Houghton, J.D.R. (2012) 'Prey field switching based on preferential behaviour can induce Levy flights'. Proceedings of the Royal Society B - Biological Sciences.  
Goodman, S.M., Puechmaille, S., Friedli-Weyeneth, N., Gerlach, J., Ruedi, M., Schoeman, C., Stanley, W.T. and Teeling, E.C. (2012) 'Phylogeny of the Emballonurini bats (Family Emballonuridae): new genus of Emballonura and species of Coleura'. Journal of Mammalogy, 93 (6):1440-1455.  
D. J. Buckley, M. G. Lundy, E. S. M. Boston, D. D. Scott, Y. Gager, P. Prodohl, F. Marnell, W. I. Montgomery, E. C. Teeling (2012) 'The spatial ecology of the whiskered bat (Myotis mystacinus) at the western extreme of its range provides evidence of regional adaptation'. Mammalian Biology, 78 (3):198-204.  
Dr Douglas Veale
Collins, E.S., Galligan, M.C., Saldova, R., Adamczyk, B., Abrahams, J.L., Campbell, M.P., Ng, C.T., Veale, D.J., Murphy, T.B., Rudd, P.M., FitzGerald, O. (2013) 'Glycosylation Status of Serum in Inflammatory Arthritis in Response to Anti-TNF Treatment'. Rheumatology, 52 (9):1572-1582.  
Professor Matthias Wilm
Hannes Hahne, Fiona Pachl, Benjamin Ruprecht,Stefan K Maier, Susan Klaeger, Dominic Helm, Guillaume M?rd , Matthias Wilm , Simone Lemeer, Bernhard Kuster (2013) 'DMSO enhances electrospray response, boosting sensitivity of proteomic experiments'. Nature Methods, 10 (10):989-991. Available Online  
Dr Xiangming Zhu
Raymond Smith, Xiaojun Zeng, Helge Muller-Bunz, Xiangming Zhu (2013) 'Synthesis of glycosyl disulfides containing an α-glycosidic linkage'. Tetrahedron Letters, 54:5348-5350.  
X. Zeng, R. Smith, X. Zhu (2013) 'Synthesis of thioglycoside analogues of maradolipid'. Journal of Organic Chemistry, 78:4165-4170.  
N. Murphy, A. Petrasca, N. M. Murphy, V. O'Reilly, P. Evans, D. G. Doherty, X. Zhu (2013) 'Synthesis and immunostimulatory activity of two α-S-galactosyl phenyl-capped ceramides'. Arkivoc, 2013:363-377.  


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Other Journals

Professor Mohamed Al-Rubeai
Al-Rubeai M. and Kuystermans D. (2013) 'Valuing the future: Recent advances and future directions in cell line development' Pharmaceutical Bioprocessing, 1 (3):243-247.  
Professor Andrew Green
J. M. Darlow, M. G. Dobson, R. Darlay, C. M. Molony, M. Hunziker, A. J. Green, H. J. Cordell, P. Puri & D. E. Barton (2013) 'A new genome scan for primary nonsyndromic vesicoureteric reflux emphasizes high genetic' Molecular Genetics and Genomic Medicine .  
O'Brien RP, Phelan PJ, Conroy J, O'Kelly P, Green A, Keogan M, O'Neill D, Jennings S, Traynor C, Casey J, McCormack M, Conroy R, Chubb A, Ennis S, Shields DC, Cavalleri GL, Conlon PJ (2013) 'A genome-wide association study of recipient genotype and medium-term kidney allograft function' clinical transplantation .  


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Conference Publications

Professor Mohamed Al-Rubeai
Al-Majmaie R., Alattar N., Kennedy E., Al-Rubeai M., Rice J., Zerulla D. (2013) Raman spectroscopy for intracellular localisation of meso-tetraphenylporphyrin-gold nanoparticles conjugates SPIE 8815, Nanoimaging and Nanospectroscopy,  
Dr John Crean
Kavanagh, D., Gaffney A., Murphy, M., Faherty, N., Andrews, D., Higgins, D., McKay, G., Maxwell, P., Godson, C. and Crean, J. (2012) Wnt 6 is increased in diabetic nephropathy and modulates de novo tubulogenesis and opposes TGFbeta mediated epithelial cell differentiation in vitro American Society of Nephrology,  
Dr Giuliano Elia
Gegenbauer, K; Elia,G; Blanco-Fernandez, A; Smolenski, A (2012) RGS18 integrates activatory and inhibitory signalling in platelets First European Platelet Network Conference,  
Professor Catherine Godson
Kavanagh, D., Gaffney A., Murphy, M., Faherty, N., Andrews, D., Higgins, D., McKay, G., Maxwell, P., Godson, C. and Crean, J. (2012) Wnt 6 is increased in diabetic nephropathy and modulates de novo tubulogenesis and opposes TGFbeta mediated epithelial cell differentiation in vitro American Society of Nephrology,  
Dr Amanda McCann
Ivers, L; Cummings, BK; McCann, A; Itasaki, N (2013) The effect of microenvironment on breast cancer cells cultured in 3D matrix Irish Association for Cancer Research Annual Meeting,  
Professor Wim Meijer
Garcia, M.S., Carvalho, D., Zlydareva, O., Muldoon, C., Masterson, B.F., O'Grady, M.F., Meijer, W.G., O'Sullivan, J.J., O'Hare, G,M.P. (2012) An Agent-Based Wireless Sensor Network for Water Quality Data Collection . In: J. Bravo, D. Lopez-de-Ipina, F. Moya eds. 6th International Conference Ubiquitous Computing and Ambient Intelligence (UCAmI), Vitoria-Gasteiz, Spain, 454 - 461  
Sanchez, M.; O'Hare, G.M.P.; O'Grady, M.J.; Carvalho, D.; Zlydareva, O.; Muldoon, C.; Meijer, W.; O'Sullivan, J.; O'Keefe, B. (2012) An Agent-based Wireless Sensor Network for Water Quality Data Collection 6th International Conference on Ubiquitous Computing & Ambient Intelligence (UCAmI 2012), Vitoria-Gasteiz, Spain, 454 - 461  
Bedri,Z., O'Sullivan, J.J., Corkery, A., Deering, L., Demeter, K., Meijer, W. G., O'Hare, G. and Masterson, B. (2012) Real-time Prediction System of Bathing Water Quality at Bray, Co. Wicklow, Ireland New Developments in IT & Water, Amsterdam,  
Dr Keith Murphy
Murphy RP, Keogh EA, O'Shea SD, Bowen G, Pickering M, Murphy KJ (2013) The nootropic agent nefiracetam is a potential remyelinating therapeutic in vivo XI European Meeting on Glial Cells in Health and Disease, S134  
O'Shea SD, Keogh EA, Murphy RP, Bowen G, Pickering M, Murphy KJ (2013) Exploring the mechanism of action of the novel remyelinating therapeutic nefiracetam XI European Meeting on Glial Cells in Health and Disease, S135  
Sheridan GK, Pickering M, Watters O, Halley PG, O'Sullivan NC, Mooney C, O'Connor JJ, Murphy KJ (2012) CX3CL1 is up-regulated in the rat hippocampus during memory-associated synaptic plasticity Society for Neuroscience Annual Meeting 2012,  
Wdowicz A, Gleize JJ, Bowen G, Murphy KJ, O'Connell DJ (2012) The calcium binding protein secretagogin is expressed in discrete cell populations in the adult rat brain and exhibits age-associated regulation Society for Neuroscience Annual Meeting 2012,  
Dr Jarlath Nally
O'Donovan J., Gutierrez J., Williams E., Proctor A., Worrall S., Marques P., Brady C., McElroy M., Maley S., Nally J., Buxton D., Sammin D., Bassett H. and Markey B. (2013) Comparative aspects of placental pathology and immunopathology in ewes challenged with Chlamydophila abortus or Toxoplasma gondii Second European Meeting on Animal Chlamydioses and Zoonotic Implications, Jena, Germany,  
Dr John O'Connor
A. Wall, A.E. Corcoran, K. O'Halloran, J.J. O' Connor (2013) Effects of chronic intermittent hypoxia and prolyl-hydroxylase inibition on synaptic transmission and plasticity in the rat ca1 and dentate gyrus Section of Biomedical Sciences, RAMI, UCC, Cork,  
H. Nolan, A.E. Corcoran, J.J. O'Connor (2013) The effects of hypoxia-mimetic drugs on synaptic transmission and synaptic plasticity in the dentate gyrus in vitro Section of Biomedical Sciences, RAMI, UCC, Cork,  
C. Leyden, R.A. Fanning, D.P. Campion, J.J. OConnor (2013) A novel role for adrenergic and serotonergic signaling in the action of ergometrine in isolated term human myometrium Section of Biomedical Sciences, RAMI, UCC, Cork,  
Alan E. Corcoran, John J. OConnor (2013) Acute hypoxic pre-conditioning and prolyl-hydroxylase inibition improves synaptic transmission recovery time from a subsequent hypoxic insult in the rat hippocampus Section of Biomedical Sciences, RAMI, UCC, Cork,  
Luke M. Alvey, John J. OConnor (2013) Novel interactions of succinate, lipopolysaccharide and hypoxia on synaptic transmission in the rat hippocampus in vitro Section of Biomedical Sciences, RAMI, UCC, Cork,  
Dr Albert Smolenski
Gegenbauer, K; Elia,G; Blanco-Fernandez, A; Smolenski, A (2012) RGS18 integrates activatory and inhibitory signalling in platelets First European Platelet Network Conference,  
Hampson, A; Smolenski, A (2012) Synaptotagmin-like protein 4 regulates platelet granule secretion First European Platelet Network Conference,  


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Published Reports

Professor Mohamed Al-Rubeai
Al-Rubeai (2013) Quality Assurance of Iraqi Engineering Colleges. UNESCO, Amman.  


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Other Publications

Professor Alan Baird
Rogers, AC,Collins, D,Mohan, HM,Baird, AW,Winter, DC (2013) Bacterial-produced polyamines interfere with the colonic mucus barrier. Abstract.  
Rogers, AC,Collins, D,Quinn, N,Mohan, HM,Baird, AW,Winter, DC (2013) Bacterial-produced polyamines allow bacterial colonisation of the colonic mucus barrier. Abstract.  
Dr Lorraine Brennan
Lindsay, KL,Walsh, CA,Brennan, L,McAuliffe, FM (2013) Probiotics in pregnancy and maternal outcomes: a systematic review. Reviews.  
Professor Sean Callanan
Callanan JJ (2012) Pathology, a path well worn. Editorial.  
Professor Catherine Godson
Murphy, M,Hickey, F,Godson, C (2013) IHG-1 amplifies TGF-beta 1 signalling and mitochondrial biogenesis and is increased in diabetic kidney disease. Reviews.  
Dr Breand?Kennedy
Moriarity, AR,Murphy, A,Cathcart, M,Kennedy, BN,Murphy, P,McCormick, PH,O'Sullivan, JN,Mehigan, BJ (2013) Assessing novel small molecule drugs as potential new therapeutic options to treat colorectal cancer. Abstract.  
Professor Carel Le Roux
Neff, KJ,le Roux, CW (2013) Incretins: new targets for the prevention of diabetes and obesity. Reviews.  
Neff, KJ,Olbers, T,le Roux, CW (2013) Bariatric surgery: the challenges with candidate selection, individualizing treatment and clinical outcomes. Reviews.  
Neff, KJ,Prenner, C,Chuah, LL,Godsland, I,le Roux, CW (2013) Bariatric Surgery: A Holistic Assessment of Outcomes. Abstract.  
Professor Patrick Lonergan
Maillo, V,Duffy, P,O'Hara, L,de Frutos, C,Kelly, AK,Lonergan, P,Rizos, D (2013) EFFECT OF HUMAN CHORIONIC GONADOTROPIN (HCG) ADMINISTRATION ON DAYS 1, 2, 3, OR 4 POST-OESTRUS ON CORPUS LUTEUM DEVELOPMENT AND CIRCULATING PROGESTERONE CONCENTRATIONS IN BEEF HEIFERS. Abstract.  
O'Hara, L,Forde, N,Rizos, D,Maillo, V,Ealy, AD,Kelly, AK,Rodriguez, P,Evans, ACO,Lonergan, P (2013) EFFECT OF SHORT TERM PROGESTERONE SUPPLEMENTATION ON CIRCULATING PROGESTERONE CONCENTRATION, CORPUS LUTEUM SIZE, AND EARLY EMBRYO DEVELOPMENT IN CATTLE. Abstract.  
Al Naib, A,Mamo, S,Lonergan, P (2013) INVESTIGATION OF A PREFERENTIALLY UPREGULATED GENE CLUSTER IN DAY 7 BOVINE EMBRYOS DERIVED FROM RNA SEQUENCING DATA. Abstract.  
Dr Amanda McCann
McEvoy, L,O'Toole, S,Spillane, C,Stordal, B,Gallagher, M,Martin, C,Norris, L,Gleeson, N,McGoldrick, A,Furlong, F,McCann, A,Sheils, O,O'Leary, J (2013) Novel Hypoxia-Associated Markers of Chemoresistance in Ovarian Cancer. Abstract.  
Professor Ronan O'Connell
Evers, J,Carrington, EV,Scott, SM,Knowles, CH,O'Connell, PR,Jones, JFX (2013) Comparison of anal evoked potentials elicited by mechanical and electrical stimuli in anaesthesised rats. Abstract.  
O'Connell, PR (2013) Sacral nerve stimulation for constipation (Br J Surg2013; 100: 174-181). Editorial.  
Professor Ciaran Regan
Duggan, E,Finucane, C,Cronin, H,O'Regan, C,Savva, G,Loughman, J,Kenny, RA (2013) VISION, FALLS AND FEAR OF FALLING IN AN OLDER IRISH POPULATION: FINDINGS FROM THE IRISH LONGITUDINAL STUDY ON AGEING (TILDA). Abstract.  
Professor Helen Roche
McAllan, L,Cotter, PD,Roche, HM,Korpela, R,Nilaweera, KN (2013) Impact of leucine on energy balance. Reviews.  
Professor Cormac Taylor
Scholz, CC,Taylor, CT (2013) Hydroxylase-dependent regulation of the NF-kappa B pathway. Reviews.  
Professor Bill Watson
Flynn, L,Sheils, O,O'Leary, JJ,Finn, SP,Watson, W,Loda, M,Mucci, L (2013) miRNA Signatures of Indolent and Aggressive Prostate Cancer. Abstract.  


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