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Carrageenan beads for food delivery systems. Image by Ashling Ellis and Sonja Keppeler.

Carrageenan beads for food delivery systems. Image by Ashling Ellis and Sonja Keppeler.

UCD Institute of Food and Health

UCD Institute of Food and Health - Research Publications 2012/13

Below is the list of research publications for the UCD Institute of Food and Health in the academic year 2012/13.




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Book Chapters

Dr Tommy Boland
Purcell, P.J., O'Brien, M., Boland, T.M., McEvoy, M. O'Kiely, P. (2013) 'The Impact of Perennial Ryegrass Variety Throughout the Growing Season on in vitro Rumen Methane Output' In: Purcell, P.J., O'Brien, M., Boland, T.M., McEvoy, M. O'Kiely, P (eds). Breeding strategies for sustainable forage and turf grass improvement. Netherlands: Springer.  
Professor Francis Butler
Mc Carthy, U., Laniel, M., Uysal, I., Corkery, G., Butler, F., McDonnell, K. & Ward, S (2013) 'Sustainable Global Food Supply Networks' In: Mc Carthy, U., Laniel, M., Uysal, I., Corkery, G., Butler, F., McDonnell, K. & Ward, S (eds). Sustainable Food Processing. UK: Blackwell Publishing.  
Dr Enda Cummins
Tiwari U. and Cummins E. (2013) 'Sources of phytochemicals - Fruits and vegetables' In: Tiwari B., Brunton N., Brennan C.S (eds). Handbook of Plant Food Phytochemicals: Sources, Stability and Extraction. Chichester, West Sussex, PO19 8SQ, UK: Wiley-Blackwell. , pp.107-137  
Professor Nick Holden
A.A. Piwowarczyk, N.M. Holden (2013) 'Adsorption-Desorption Processes and Mobility of (4-Chloro-2-Methylophenoxy) Acetic Acid (MCPA) in Irish Grassland Soils' In: Daiki Kobayashi and Eito Watanabe (eds). Handbook on Herbicides: Biological Activity, Classification and Health & Environmental Implications. United States of America: Nova Science Publishers.  
A.A. Piwowarczyk, N.M. Holden (2013) 'A Laboratory Lysimeter for Pesticide Transport Studies' In: Daiki Kobayashi and Eito Watanabe (eds). Handbook on Herbicides: Biological Activity, Classification and Health & Environmental Implications. United States of America: Nova Science Publishers.  
Dr Jean-Christophe Jacquier
Harbourne, N., Marete, E., Jacquier, J.C., O'Riordan, D. (2013) 'Conventional extraction techniques for phytochemicals' In: Harbourne, N., Marete, E., Jacquier, J.C., O'Riordan, D (eds). Handbook of Phytochemicals: sources, stability and extraction. England: Wiley-Blackwell.  
Dr James Lyng
Lyng, JG; McKenna, BM (2013) 'Ohmic Pasteurisation of meat and meat products' In: Kutz, M (eds). Handbook of Farm, Dairy and Food Machinery Engineering. Philadelphia: Elsevier. , pp.541-570  
Dr Kevin McDonnell
Everard, C.D., McDonnell K and Fagan C.C. (2013) 'Environmental Impact Assessment' In: Everard, C.D., McDonnell K and Fagan C.C (eds). Sustainable Food Processing. London, UK: Blackwell Publishing.  
Professor Colm O'Donnell
B.K. Tiwari, P. Cullen, C. Brennan, C.P. O'Donnell (2013) 'Non thermal processing' In: B.K. Tiwari, N Brunton and C.S. Brennan (eds). Handbook of Plant Food Phytochemicals: Sources, Stability and Extraction. UK: Wiley-Blackwell.  
Professor Dolores O'Riordan
Harbourne, N., Marete, E., Jacquier, J.C., O'Riordan, D. (2013) 'Conventional extraction techniques for phytochemicals' In: Harbourne, N., Marete, E., Jacquier, J.C., O'Riordan, D (eds). Handbook of Phytochemicals: sources, stability and extraction. England: Wiley-Blackwell.  
Professor Shane Ward
Mc Carthy, U., Laniel, M., Uysal, I., Corkery, G., Butler, F., McDonnell, K. & Ward, S (2013) 'Sustainable Global Food Supply Networks' In: Mc Carthy, U., Laniel, M., Uysal, I., Corkery, G., Butler, F., McDonnell, K. & Ward, S (eds). Sustainable Food Processing. UK: Blackwell Publishing.  


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Books Edited

Dr Enda Cummins
Cummins E. and Curran T (Ed.). (2013) Biosystems Engineering Research Review 18. Dublin: UCD.  
Dr Tom Curran
Cummins, E. and Curran, T (Ed.) (Ed.). (2013) Biosystems Engineering Research Review 18. Dublin: UCD.  


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Peer Reviewed Journals

Dr Tommy Boland
Boland, T.M., Quinlan, C., Pierce, K.M., Lynch, M.B., Kelly, A.K and Purcell, P. J. (2013) 'The effect of pasture pre-grazing herbage mass on methane emissions, ruminal fermentation, and average daily gain of grazing beef heifers'. Journal of Animal Science, 91:3867-3874.  
Boots,B., Lillis,L., Clipson,N., Petrie,K., Kenny,D.A., Boland,T.M., and Doyle,E (2013) 'Responses of anaerobic rumen fungal diversity (phylum Neocallimastigomycota) to changes in bovine diet'. Journal of Applied Microbiology, 114:626-635.  
Deighton, M.H., O'Loughlin, B.M., Williams, S.R.O., Moate, P.J., Kennedy, E., Boland, T.M. and Eckard, R.J. (2013) 'Declining sulphur hexafluoride permeability of polytetrafluoroethylene membranes causes overestimation of calculated ruminant methane emissions using the tracer Technique'. Animal Feed Science and Technology, 183.  
O'Neill, B.F., Lewis, E., O'Donovan, M., Shalloo, L., Galvin, N., Mulligan, F.J., Boland, T.M. and Delagarde, R. (2013) 'Predicting grass dry matter intake, milk yield and milk fat and protein yield of spring calving grazing dairy cows during'. Animal, 7:1379-1389.  
O'Brien, M., Navarro-Villa, A, Purcell, P., Boland, T.M. and O'Kiely, P. (2013) 'Reducing in vitro methanogenesis for two contrasting diets using a series of inclusion rates of eleven additives'. Animal Production Science.  
Ganche E, Delaby L, O'Donovan M, Boland TM, Kennedy E. (2013) 'Direct and carryover effect of post-grazing sward height on total lactation dairy cow performance'. Animal, 7 :1390-1400.  
Wims, CM,McEvoy, M,Delaby, L,Boland, TM,O'Donovan, M (2013) 'Effect of perennial ryegrass (Lolium perenne L.) cultivars on the milk yield of grazing dairy cows'. Animal, 7 :410-421.  
Boots, B,Lillis, L,Clipson, N,Petrie, K,Kenny, DA,Boland, TM,Doyle, E (2013) 'Responses of anaerobic rumen fungal diversity (phylum Neocallimastigomycota) to changes in bovine diet'. Journal of Applied Microbiology, 114:626-635.  
Navarro-Villa, A,O'Brien, M,Lopez, S,Boland, TM,O'Kiely, P (2013) 'In vitro rumen methane output of grasses and grass silages differing in fermentation characteristics using the gas-production technique (GPT)'. Grass and Forage Science, 68:228-244.  
O'Neill, B.F., Lewis, E., O'Donovan, M., Shalloo, L., Mulligan, F.J., Boland, T.M. and Delagarde, R. 2013. Grass and forage Science. (2012) 'Evaluation of the GrazeIn model of grass dry-matter intake and milk production prediction for dairy cows in temperate grass-based production systems. 1Sward characteristics and grazing management factors'. Grass and Forage Science .  
O'Neill, B.F., Lewis, E., O'Donovan, M., Shalloo, L., Mulligan, F.J., Boland, T.M. and Delagarde, R. (2012) 'valuation of the GrazeIn model of grass dry-matter intake and milk production prediction for dairy cows in temperate grass-based production systems 2 Animal characteristics'. Grass and Forage Science.  
Creighton, P., Gilliland, T.J., Delaby, L., Kennedy, E., Boland, T.M. and O'Donovan, M (2012) '. Effect of Lolium perenne sward density on productivity under simulated and actual cattle grazing'. Grass and Forage Science.  
Navarro-Villa, A. O'Brien, M., López, S., Boland, T.M. and O'Kiely, P. (2012) 'In vitro rumen methane output of grasses and grass silages differing in fermentation characteristics using the gas-production technique (GPT)'. Grass and Forage Science.  
Dr Lorraine Brennan
Morris C, Gibney M, Roche H, Ryan M, Grada O, De Vito G, Gibney E, Brennan L (2013) 'The relationship between aerobic fitness level and metabolic profiles in healthy adults'. Molecular Nutrition and Food Research.  
Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L (2013) 'Identification of differential responses to an oral glucose tolerance test in healthy adults'. PLoS ONE, 8 (8).  
Matoba S, Bender K, Fahey AG, Mamo S, Brennan L, Lonergan P, Fair T (2013) 'Predictive value of bovine follicular components as markers of oocyte developmental potential'. Reproduction, fertility, and development.  
Neal CM, Hunter AM, Brennan L, O'Sullivan A, Hamilton DL, De Vito G, Galloway SD (2013) 'Six weeks of a polarized training-intensity distribution leads to greater physiological and performance adaptations than a threshold model in trained cyclists'. Journal of Applied Physiology, 114 (4):461-471.  
Brennan, L (2013) 'Metabolomics in nutrition research: current status and perspectives'. Biochemical Society Transactions, 41:670-673.  
Forte, R,Boreham, CAG,Leite, JC,De Vito, G,Brennan, L,Gibney, ER,Pesce, C (2013) 'Enhancing cognitive functioning in the elderly: multicomponent vs resistance training'. Clinical Interventions in Aging, 8:19-27.  
Ryan, MF,Grada, CO,Morris, C,Segurado, R,Walsh, MC,Gibney, ER,Brennan, L,Roche, HM,Gibney, MJ (2013) 'Within-person variation in the postprandial lipemic response of healthy adults'. American Journal of Clinical Nutrition, 97:261-267.  
Neal, CM,Hunter, AM,Brennan, L,O'Sullivan, A,Hamilton, DL,DeVito, G,Galloway, SDR (2013) 'Six weeks of a polarized training-intensity distribution leads to greater physiological and performance adaptations than a threshold model in trained cyclists'. Journal of applied physiology (Bethesda, Md.: 1985), 114:461-471.  
Monahan FJ, Moloney AP, Osorio MT, Rohrle, FT, Schmidt O and Brennan L (2012) 'Authentication of grass-fed beef using bovine muscle, hair or urine'. Trends in Food Science & Technology, 28 (2):69-76. Available Online  
Dr Nigel Patrick Brunton
Russo, Daniela, Kenny, Owen, Smyth, Thomas J., Milella, Luigi, Hossain, Mohammad B., Diop, Moussoukhoye Sissokho, Rai, Dilip K., Brunton, Nigel P. (2013) 'Profiling of Phytochemicals in Tissues from Sclerocarya birrea by HPLC-MS and Their Link with Antioxidant Activity'. ISRN Chromatography, 2013. Available Online  
Tierney, MichelleS, Soler-Vila, Anna, Rai, DilipK, Croft, AnnaK, Brunton, NigelP, Smyth, ThomasJ (2013) 'UPLC-MS profiling of low molecular weight phlorotannin polymers in Ascophyllum nodosum, Pelvetia canaliculata and Fucus spiralis'. Metabolomics, :1-12. Available Online  
Tierney, Michelle S., Smyth, Thomas J., Hayes, Maria, Soler-Vila, Anna, Croft, Anna K., Brunton, Nigel (2013) 'Influence of pressurised liquid extraction and solid liquid extraction methods on the phenolic content and antioxidant activities of Irish macroalgae'. International Journal of Food Science and Technology, 48 (4):860-869. Available Online  
Brunton, Nigel P (2013) 'Thermal processing'. Handbook of Plant Food Phytochemicals: Sources, Stability and Extraction, :247-259.  
Lyng J.G., , Zhang L., , Marra F., , Brunton N.P. (2013) 'Effect of freezing rate and comminution on dielectric properties of pork'. Czech Journal of Food Science, 31:413-418.  
Mitchell, Michelle, Brunton, Nigel P., Wilkinson, Martin G. (2013) 'The influence of salt taste threshold on acceptability and purchase intent of reformulated reduced sodium vegetable soups'. Food Quality and Preference, 28 (1):356-360. Available Online  
Mitchell, Michelle, Brutnon, Nigel P., Fitzgerald, Richard J., Wilkinson, Martin G. (2013) 'The Use of Herbs, Spices, and Whey Proteins as Natural Flavor Enhancers and Their Effect on the Sensory Acceptability of Reduced-Salt Chilled Ready-Meals'. Journal of Culinary Science & Technology, 11 (3):222-240. Available Online  
Olivia Kenny, Catherine McCarthy, Nigel Brunton, Mohammad Hossain, Dilip Rai, Stuart Collins, Peter Jones, Anita R. Maguire, Nora M. O'Brien (2013) 'Anti-inflammatory properties of potato glycoalkaloids in stimulated Jurkat and Raw 264.7 mouse macrophages'. Life Sciences.  
Rawson, Ashish, Brunton, Nigel P, Rai, Dilip K, McLoughlin, Padraig, Tiwari, Brijesh K, Tuohy, Maria G (2013) 'Stability of falcarinol type polyacetylenes during processing of Apiaceae vegetables'. Trends in Food Science & Technology.  
Rawson, Ashish, Hossain, Mohammad B, Patras, Ankit, Tuohy, Maria, Brunton, Nigel (2013) 'Effect of boiling and roasting on the polyacetylene and polyphenol content of fennel (< i> Foeniculum vulgare) bulb'. Food Research International, 50 (2):513-518.  
Reilly, Kim, Cullen, Eileen, Lola-Luz, Theodora, Stone, Dorothy, Valverde, Juan, Gaffney, Michael, Brunton, Nigel, Grant, James, Griffiths, Bryan S. (2013) 'Effect of organic, conventional and mixed cultivation practices on soil microbial community structure and nematode abundance in a cultivated onion crop'. Journal of the Science of Food and Agriculture. Available Online  
Reilly, Kim, Valverde, Juan, Finn, Leo, Rai, Dilip K., Brunton, Nigel, Sorensen, Jens C., Sorensen, Hilmer, Gaffney, Michael (2013) 'Potential of cultivar and crop management to affect phytochemical content in winter-grown sprouting broccoli (Brassica oleracea L. var. italica)'. Journal of the Science of Food and Agriculture. Available Online  
Tiwari U, Rawson A., Valverde J., Reilly K., Brunton N. and Cummins E.* (2013) 'A Farm- to- Fork Model to Evaluate the Level of Polyacetylenes in Processed Carrots'. International Journal of Food Science and Technology, 48 (8):1626-1639.  
Tierney, M. S., Smyth, T. J., Rai, D. K., Soler-Vila, A., Croft, A. K., Brunton, N. (2013) 'Enrichment of polyphenol contents and antioxidant activities of Irish brown macroalgae using food-friendly techniques based on polarity and molecular size'. Food Chemistry, 139 (1-4):753-761. Available Online  
Tiwari, U., Cummins E., Brunton, N., O'Donnell, C. and Gallagher E. (2013) 'A comparison of oat flour and oat bran-based bread formulations'. British Food Journal, 115 (2):300-313.  
Kenny, Olivia M. McCarthy, Catherine M. Brunton, Nigel P. Hossain, Mohammad B. Rai, Dilip K. Collins, Stuart G. Jones, Peter W. Maguire, Anita R. O'Brien, Nora M. (2013) 'Anti-inflammatory properties of potato glycoalkaloids in stimulated Jurkat and Raw 264.7 mouse macrophages'. Life Sciences, 92 (13):775-782.  
Kenny, O., Smyth, T. J., Hewage, C. M., Brunton, N. P (2013) 'Antioxidant properties and quantitative UPLC-MS analysis of phenolic compounds from extracts of fenugreek (Trigonella foenum-graecum) seeds and bitter melon (Momordica charantia) fruit'. Food Chemistry, 141 (4):4295-4302.  
Mireia Corell, Eimilee Sheehy Paul Evans, Nigel Brunton Juan Valverde (2013) 'Absolute Configuration of Falcarinol (9Z-heptadeca-1,9-diene-4,6-diyn-3-ol) from Pastinaca sativa'. Natural Product Reports.  
Keenan, D. F., Valverde, J., Gormley, R., Butler, F., Brunton, N. P. (2012) 'Selecting apple cultivars for use in ready-to-eat desserts based on multivariate analyses of physico-chemical properties'. LWT-Food Science and Technology, 48 (2):308-315. Available Online  
Rawson, A., Tiwari, B. K., Brunton, N., Brennan, C., Cullen, P. J., O'Donnell, C. P. (2012) 'Application of Supercritical Carbon Dioxide to Fruit and Vegetables: Extraction, Processing, and Preservation'. Food Reviews International, 28 (3):253-276. Available Online  
Professor Francis Butler
Juneja, V.K.,Gonzales-Barron, U., Butler, F., Yadav, A.S., Friedman, M. (2013) 'Predictive thermal inactivation model for the combined effect of temperature, cinnamaldehyde and carvacrol on starvation-stressed multiple Salmonella serotypes in ground chicken'. International Journal of Food Microbiology, 165 (2):184-199.  
Gonzales-Barron, U., Cadavez, V., Sheridan, J.J.,Butler, F. (2013) 'Modelling the effect of chilling on the occurrence of Salmonella on pig carcasses at study, abattoir and batch levels by meta-analysis'. International Journal of Food Microbiology, 163 (2-3):101-113.  
Gonzales-Barron, U., Zwietering, M.H., Butler, F. (2013) 'A novel derivation of a within-batch sampling plan based on a Poisson-gamma model characterising low microbial counts in foods'. International Journal of Food Microbiology, 161 (2):84-96.  
Gibbons, JF,Boland, F,Buckley, JF,Butler, F,Egan, J,Fanning, S,Markey, BK,Leonard, FC (2013) 'Influences on antimicrobial prescribing behaviour of veterinary practitioners in cattle practice in Ireland'. Veterinary Record, 172.  
Keenan, D. F., Valverde, J., Gormley, R., Butler, F., Brunton, N. P. (2012) 'Selecting apple cultivars for use in ready-to-eat desserts based on multivariate analyses of physico-chemical properties'. LWT-Food Science and Technology, 48 (2):308-315. Available Online  
Dr Enda Cummins
Tiwari U, Rawson A., Valverde J., Reilly K., Brunton N. and Cummins E.* (2013) 'A Farm- to- Fork Model to Evaluate the Level of Polyacetylenes in Processed Carrots'. International Journal of Food Science and Technology, 48 (8):1626-1639.  
Cushen M., Kerry J., Morris M., Cruz-Romerob,M., Cummins E.* (2013) 'Migration and exposure assessment of silver from a PVC nanocomposite'. Food Chemistry, 139 (1-4):389-397.  
Harris S, Cormican M and Cummins E.* (2013) 'Risk Ranking of Antimicrobials in the Environment: An Irish case study'. Human and Ecological Risk Assessment, 19 (5):1264-1284.  
Tiwari U. and Cummins E*; (2013) 'Factors influencing levels of phytochemicals in selected fruit and vegetables during pre and post food processing operations'. Food Research International, 50 (2):497-506.  
Harris S., Morris C., Morris D., Cormican M. and Cummins E.* (2013) 'The effect of hospital effluent on antimicrobial resistant E. coli within a municipal wastewater system'. Environmental Science: Processes & Impacts, 15 (3):617-622. Available Online  
Harris S, Morris C, Morris D, Cormican M and Cummins E.* (2013) 'Simulation Model to Predict the Fate and effect of Ciprofloxacin in the Environment after Wastewater Treatment'. Journal of Environmental Science and Health, Part A: Toxic/Hazardous Substances & Environmental Engineering, 48 (7):675-685.  
Tiwari, U., Cummins E., Brunton, N., O'Donnell, C. and Gallagher E. (2013) 'A comparison of oat flour and oat bran-based bread formulations'. British Food Journal, 115 (2):300-313.  
Coffey R., Dorai-Raj S., O'Flaherty V., Cormical M. and Cummins E. (2013) 'Modelling of Pathogenic Indicator Organisms in a Small-Scale Agricultural Catchment using SWAT'. International Journal of Human and Ecological Risk Asse, 19 (1):232-253.  
Coffey, R,Dorai-Raj, S,O'Flaherty, V,Cormican, M,Cummins, E (2013) 'Modeling of Pathogen Indicator Organisms in a Small-Scale Agricultural Catchment Using SWAT'. Human and Ecological Risk Assessment, 19:232-253.  
Harris, S,Morris, C,Morris, D,Cormican, M,Cummins, E (2013) 'The effect of hospital effluent on antimicrobial resistant E. coli within a municipal wastewater system'. Environmental Science-Processes & Impacts, 15:617-622.  
Tiwari, U,Cummins, E,Brunton, N,O'Donnell, C,Gallagher, E (2013) 'A comparison of oat flour and oat bran-based bread formulations'. British Food Journal, 115:300-313.  
Tiwari, U,Cummins, E (2013) 'Factors influencing levels of phytochemicals in selected fruit and vegetables during pre- and post-harvest food processing operations'. Food Research International, 50:497-506.  
Coffey R, Benham B, Krometis LA, Wolfe ML and Cummins E (2013) 'Assessing the Effects of Climate Change on Waterborne Microorganisms: Implications for EU and US Water Policy'. Human and Ecological Risk Assessment.  
Harris S., Cormican M., and Cummins E*. (2012) 'The effect of conventional wastewater treatment on the levels of antimicrobial-resistant bacteria in effluent: a meta-analysis of current studies'. Environmental Geochemistry and Health, 34 (6):749-762.  
Labite H and Cummins E*; (2012) 'A Quantitative Approach for Ranking Human Health Risks from Pesticides in Irish Groundwater'. Human and Ecological Risk Assessment, 18 (6):1549-1185.  
Dr Tom Curran
P. O. Mc Alpine, C. J. O'Shea, P. F. Varley, P. Solan, T. Curran, and J. V. O'Doherty (2012) 'The effect of protease and nonstarch polysaccharide enzymes on manure odor and ammonia emissions from finisher pigs'. Journal of Animal Science, 90:369-371.  
Professor Séamus Fanning
Haughton, P.N., Lyng, J., Fanning, S., Whyte, P. (2013) 'Potential of a commercially available water acidification product for reducing Campylobacter in broilers prior to slaughter'. Poultry Science, 54:319-324.  
Bolton, D,Patriarchi, A,Fox, A,Fanning, S (2013) 'A study of the molecular basis of quinolone and macrolide resistance in a selection of Campylobacter isolates from intensive poultry flocks'. Food Control, 30:222-226.  
Beuchat, LR,Komitopoulou, E,Beckers, H,Betts, RP,Bourdichon, F,Fanning, S,Joosten, HM,Ter Kuile, BH (2013) 'Low-Water Activity Foods: Increased Concern as Vehicles of Foodborne Pathogens'. J FOOD PROTECT, 76:150-172.  
Gibbons, JF,Boland, F,Buckley, JF,Butler, F,Egan, J,Fanning, S,Markey, BK,Leonard, FC (2013) 'Influences on antimicrobial prescribing behaviour of veterinary practitioners in cattle practice in Ireland'. Veterinary Record, 172.  
Monaghan, A,Byrne, B,Fanning, S,Sweeney, T,McDowell, D,Bolton, DJ (2013) 'Serotypes and virulence profiles of atypical enteropathogenic Escherichia coli (EPEC) isolated from bovine farms and abattoirs'. Journal of Applied Microbiology, 114:595-603.  
O'Leary, D,Mc Cabe, EM,McCusker, MP,Martins, M,Fanning, S,Duffy, G (2013) 'Microbiological study of biofilm formation in isolates of Salmonella enterica Typhimurium DT104 and DT104b cultured from the modern pork chain'. Int J Food Microbiol, 161:36-43.  
Gibbons, JF,Markey, BK,Jahns, H,Boland, F,Abbott, Y,Burns, A,Egan, J,Fanning, S,Gutierrez, M,Leonard, FC (2013) 'Investigation of the persistence and transmission of MRSA CC 5 in pigs following intra-nasal inoculation'. Veterinary Microbiology, 162:771-778.  
Pascu, ML,Danko, B,Martins, A,Jedlinszki, N,Alexandru, T,Nastasa, V,Boni, M,Militaru, A,Andrei, IR,Staicu, A,Hunyadi, A,Fanning, S,Amaral, L (2013) 'Exposure of Chlorpromazine to 266 nm Laser Beam Generates New Species with Antibacterial Properties: Contributions to Development of a New Process for Drug Discovery'. PLoS ONE, 8.  
De Majumdar, S,Veleba, M,Finn, S,Fanning, S,Schneiders, T (2013) 'Elucidating the Regulon of Multidrug Resistance Regulator RarA in Klebsiella pneumoniae'. Antimicrobial Agents and Chemotherapy, 57:1603-1609.  
Jarvis, KG,Yan, QQ,Grim, CJ,Power, KA,Franco, AA,Hu, L,Gopinath, G,Sathyamoorthy, V,Kotewicz, ML,Kothary, MH,Lee, C,Sadowski, J,Fanning, S,Tall, BD (2013) 'Identification and Characterization of Five New Molecular Serogroups of Cronobacter spp'. Foodborne Pathog Dis, 10 :343-352.  
Zhou, ZM,McCann, A,Litrup, E,Murphy, R,Cormican, M,Fanning, S,Brown, D,Guttman, DS,Brisse, S,Achtman, M (2013) 'Neutral Genomic Microevolution of a Recently Emerged Pathogen, Salmonella enterica Serovar Agona'. PLoS Genetics, 9.  
Monaghan A, Byrne B, Fanning S, Sweeney T, McDowell D, Bolton DJ (2012) 'Serotypes and virulotypes of non-O157 shiga-toxin producing Escherichia coli (STEC) on bovine hides and carcasses'. Food Microbiology, 32 (2):223-229.  
Monaghan, n, Byrne, B., Fanning, S., Sweeney, T., McDowell, D., Bolton, D.J. (2012) 'Serotypes and virulotypes of non-O157 shiga-toxin producing Escherichia coli (STEC) on bovine hides and carcasses'. Food microbiology, 32 (2):223-229.  
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P. (2012) 'Susceptibility of Campylobacter to high intensity near ultraviolet/visible 3955nm light and its effectiveness for the decontamination of raw chicken and contact surfaces'. International Journal of Food Microbiology, 159 (3):267-273.  
Dr Eileen Gibney
Morris C, Gibney M, Roche H, Ryan M, Grada O, De Vito G, Gibney E, Brennan L (2013) 'The relationship between aerobic fitness level and metabolic profiles in healthy adults'. Molecular Nutrition and Food Research.  
O'Brien, S.A., Feeney, E.L., Scannell, A.G.M., Markey, A., Gibney, E.R. (2013) 'Bitter taste perception and dietary intake patterns in Irish children'. Journal Of Nutrigenetics And Nutrigenomics, 6 (1):43-58.  
Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L (2013) 'Identification of differential responses to an oral glucose tolerance test in healthy adults'. PLoS ONE, 8 (8).  
Drummond EM and Gibney ER (2013) 'Epigenetic regulation in obesity'. Current Opinion in Clinical Nutrition and Metabolic Care, 16 (4):392-397.  
Forte R, Pesce C, Leite JC, De Vito G, Gibney ER, Tomporowski PD, Boreham CA. (2013) 'Executive function moderates the role of muscular fitness in determining functional mobility in older adults'. Aging Clin Exp Res, 25 (3):291-298.  
Forte, R,Boreham, CAG,Leite, JC,De Vito, G,Brennan, L,Gibney, ER,Pesce, C (2013) 'Enhancing cognitive functioning in the elderly: multicomponent vs resistance training'. Clinical Interventions in Aging, 8:19-27.  
Ryan, MF,Grada, CO,Morris, C,Segurado, R,Walsh, MC,Gibney, ER,Brennan, L,Roche, HM,Gibney, MJ (2013) 'Within-person variation in the postprandial lipemic response of healthy adults'. American Journal of Clinical Nutrition, 97:261-267.  
Drummond, EM,Harbourne, N,Marete, E,Martyn, D,Jacquier, JC,O'Riordan, D,Gibney, ER (2013) 'Inhibition of Proinflammatory Biomarkers in THP1 Macrophages by Polyphenols Derived From Chamomile, Meadowsweet and Willow bark'. Phytotherapy research : PTR, 27 :588-594.  
O'Brien, SA,Feeney, EL,Scannell, AGM,Markey, A,Gibney, ER (2013) 'Bitter Taste Perception and Dietary Intake Patterns in Irish Children'. Journal Of Nutrigenetics And Nutrigenomics, 6:43-58.  
Professor Mike Gibney
Morris C, Gibney M, Roche H, Ryan M, Grada O, De Vito G, Gibney E, Brennan L (2013) 'The relationship between aerobic fitness level and metabolic profiles in healthy adults'. Molecular Nutrition and Food Research.  
Martyn DM, McNulty BA, Nugent AP, Gibney MJ (2013) 'Food additives and preschool children. Proc Nutr Soc. 2013 Feb;72(1):109-16'. Proceedings of the Nutrition Society, 72 (1):109-116.  
Gibney MJ, Walsh MC. The future direction of personalised nutrition: my diet, my phenotype, my genes. Proc Nutr Soc. 2013 Jan 30:1-7. (2013) 'The future direction of personalised nutrition: my diet, my phenotype, my genes'. Proceedings of the Nutrition Society, 30:1-7.  
Devlin NF, McNulty BA, Gibney MJ, Thielecke F, Smith H, Nugent AP (2012) 'Whole grain intakes in the diets of Irish children and teenagers'. British Journal of Nutrition.  
Professor Nick Holden
Yan, M.-J., Humphreys, J., Holden, N. M. (2013) 'LCA of milk production from commercial dairy farms: the influence of management tactics'. Journal of Dairy Science, 96:4112-4124.  
Kerebel A., Jordan P, Cassidy, R., Holden, N.M (2013) 'Farmer Perception Of Suitable Conditions For Slurry Application Compared With Decision Support System Recommendations'. Agricultural Systems, 120:49-60.  
Yan, M.-J., Humphreys, J., Holden, N. M (2013) 'Evaluation of Input-Output and process based LCA of Irish milk production'. Journal of Agricultural Science, 151:701-713.  
Kerebel, A., R. Cassidy, P. Jordan, N. M. Holden (2013) 'Soil Moisture Deficit as a predictor of the trend in soil water status of grass fields'. Soil Use and Management, 29:419-431.  
Jianjun Cao, E, Yeh, N.M. Holden, Yangyang Yang (2013) 'The effects of enclosures and land-use contracts on grassland degradation on the Qinghai Tibetan plateau'. Journal of Arid Environments, 97:3-8.  
Piwowarczyk A A. and N M. Holden (2013) 'Phenoxyalkanoic acid herbicide sorption and the effect of co-application in a Haplic Cambisol with contrasting management'. Chemosphere, 90:535-541.  
Yan, M-J, Humphreys, J. and Holden, N. M (2013) 'The carbon footprint of pasture based milk production: can white clover make a difference?'. Journal of Dairy Science, 96:857-865.  
J O'Connell, John Connolly, Eric F. Vermote and Nicholas M. Holden (2013) 'Radiometric normalisation of a multispectral database of satellite imagery of peatlands for change detection monitoring'. International Journal of Remote Sensing, 32:2377-2393.  
Labite H, N. M. Holden, K G. Richards, G Kramers, A Premrov, C. E. Coxon, E Cummin (2013) 'Comparison of pesticide leaching potential to groundwater under EU FOCUS and site specific conditions'. Science of the Total Environment, 463-464:432-441.  
Dr Jean-Christophe Jacquier
Egan, T.a b and Jacquier, J.-C.a and Rosenberg, Y.b and Rosenberg, M.b (2013) 'Cold-set whey protein microgels for the stable immobilization of lipids'. Food Hydrocolloids, 31 (2):317-324. Available Online  
Harbourne, N. and Marete, E. and Jacquier, J.C. and O'Riordan, D. (2013) 'Stability of phytochemicals as sources of anti-inflammatory nutraceuticals in beverages - A review'. Food Research International, 50 (2):480-486. Available Online  
Marete, E.N. and Jacquier, J.-C. and O'Riordan, D. (2013) 'Effect of processing temperature on the stability of parthenolide in acidified feverfew infusions'. Food Research International, 50 (2):593-596. Available Online  
Drummond, E.M. and Harbourne, N. and Marete, E. and Martyn, D. and Jacquier, J.C. and O'Riordan, D. and Gibney, E.R. (2013) 'Inhibition of proinflammatory biomarkers in THP1 macrophages by polyphenols derived from chamomile, meadowsweet and willow bark'. Phytotherapy Research, 27 (4):588-594. Available Online  
Professor Cecily Kelleher
McGorrian C, O' Hara MC, Reid V, Minogue M, Fitzpatrick P, Kelleher C. (2013) 'A brief cookery skills intervention is no more effective than written information alone in reducing body mass index in overweight cardiac rehabilitation patients'. Health Promotion International.  
Murphy, TM,Mullins, N,Ryan, M,Foster, T,Kelly, C,McClelland, R,O'Grady, J,Corcoran, E,Brady, J,Reilly, M,Jeffers, A,Brown, K,Maher, A,Bannan, N,Casement, A,Lynch, D,Bolger, S,Buckley, A,Quinlivan, L,Daly, L,Kelleher, C,Malone, KM (2013) 'Genetic variation in DNMT3B and increased global DNA methylation is associated with suicide attempts in psychiatric patients'. Genes Brain And Behavior, 12:125-132.  

O'Donovan, A,Rush, G,Hoatam, G,Hughes, BM,McCrohan, A,Kelleher, C,O'Farrelly, C,Malone, KM (2013) 'SUICIDAL IDEATION IS ASSOCIATED WITH ELEVATED INFLAMMATION IN PATIENTS WITH MAJOR DEPRESSIVE DISORDER'. Depression And Anxiety, 30:307-314.  
Shortt, E,McGorrian, C,Kelleher, C (2013) 'A qualitative study of infant feeding decisions among low-income women in the Republic of Ireland'. Midwifery, 29:453-460.  
.Murphy TM, Mullins N, Ryan M, Foster T, Kelly C, McClelland R, O'Grady J, Corcoran E, Brady J, Reilly M, Jeffers A, Brown K, Maher A, Bannan N, Casement A, Lynch D, Bolger S, Buckley A, Quinlivan L, Daly L, Kelleher C, Malone KM. (2012) 'Genetic variation in DNMT3B and increased global DNA methylation is associated with suicide attempts in psychiatric patients'. Genes, Brain and Behavior.  
Dr James Lyng
Lyng J.G., , Zhang L., , Marra F., , Brunton N.P. (2013) 'Effect of freezing rate and comminution on dielectric properties of pork'. Czech Journal of Food Science, 31:413-418.  
Haughton, P.N., Lyng, J., Fanning, S., Whyte, P. (2013) 'Potential of a commercially available water acidification product for reducing Campylobacter in broilers prior to slaughter'. Poultry Science, 54:319-324.  
Halpin, R.M., Cregenzan-Alberti, O., Whyte, P., Lyng, J.G., Noci, F. (2013) 'Combined treatment with mild heat, manothermosonication and pulsed electric fields reduces microbial growth in milk'. Food Control, 34:364-371.  
McDonnell, C.K., Allen, P., Duggan, E., Arimi, J.M., Casey, E., Duane, G. & Lyng, J.G (2013) 'The effect of salt and fibre direction on water dynamics, distribution and mobility in pork muscle: A low field NMR study'. Meat Science, 95:51-58.  
O'Dowd, LP; Arimi, JM; Noci, F; Cronin, DA; Lyng, JG (2013) 'An assessment of the effect of pulsed electrical fields on tenderness and selected quality attributes of post rigour beef muscle'. Meat Science, 93 (2):303-309.  
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P. (2012) 'Susceptibility of Campylobacter to high intensity near ultraviolet/visible 3955nm light and its effectiveness for the decontamination of raw chicken and contact surfaces'. International Journal of Food Microbiology, 159 (3):267-273.  
Dr Kevin McDonnell
Murphy, F., Devlin, G. and McDonnell, K; (2013) 'The Evaluation Of Flash Point And Cold Filter Plugging Point With Blends Of Diesel And Cyn-Diesel Pyrolysis Fuel For Automotive Engines'. the open fuels and energy science journal, 6 :1-8.  
Devlin, G. Klvac, R. and McDonnell, K; (2013) 'Fuel efficiency and CO2 emissions of biomass based haulage in Ireland - A case study'. Energy, 54:55-62.  
Galbally, P,Ryan, D,Fagan, CC,Finnan, J,Grant, J,McDonnell, K (2013) 'Biosolid and distillery effluent amendments to Irish short rotation coppiced willow plantations: Impacts on groundwater quality and soil'. Agricultural Water Management, 116:193-203.  
Henihan, AM,Bowen, B,Lynch, D,McDonnell, K,Kwapinski, W,Leahy, JJ (2013) 'Utilisation of poultry litter as an energy feedstock'. BIOMASS & BIOENERGY, 4 :197-204.  
Dr Fiona McGillicuddy
Finucane OM, Reynolds CM, McGillicuddy FC, Roche HM (2012) 'Insights into the role of macrophage migration inhibitory factor in obesity and insulin resistance'. The Proceedings of the Nutrition Society, 71 (4):622-633.  
Börgeson E, McGillicuddy FC, Harford KA, Corrigan N, Higgins DF, Maderna P, Roche HM, Godson C (2012) 'Lipoxin A4 attenuates adipose inflammation'. FASEB Journal, 26 (10):4287-4294.  
Oliver, E., McGillicuddy, F. C., Harford, K. A., Reynolds, C. M., Phillips, C. M., Ferguson, J. F., Roche, H. M. (2012) 'Docosahexaenoic acid attenuates macrophage-induced inflammation and improves insulin sensitivity in adipocytes-specific differential effects between LC n-3 PUFA'. J Nutr Biochem, 23 (9):1192-200. Available Online  
Professor Frank Monahan
Contini C, lvarez, R, O'Sullivan M, Dowling D, Gargan S, and Monahan FJ. (2013) 'Effect of an active packaging with Citrus extract on lipid oxidation and sensory quality of cooked turkey meat'. Meat Science. Available Online  
Contini C, Valzacchi S, O'Sullivan M, Simoneau C, Dowling DP and Monahan FJ (2013) 'Overall Migration and Kinetics of Release of Antioxidant Compounds from Citrus Extract-Based Active Packaging'. Journal of Agricultural and Food Chemistry. Available Online  
Luciano, G,Pauselli, M,Servili, M,Mourvaki, E,Serra, A,Monahan, FJ,Lanza, M,Priolo, A,Zinnai, A,Mele, M (2013) 'Dietary olive cake reduces the oxidation of lipids, including cholesterol, in lamb meat enriched in polyunsaturated fatty acids'. Meat Sci, 93:703-714. Available Online  
Monahan, F.J., Moloney, A.P., Osorio, M.T., Röhrle, F.T., Schmidt, O. and Brennan, L. (2012) 'Authentication of grass-fed beef using bovine muscle, hair or urine'. Trends in Food Science & Technology, 28 (2):69-76. Available Online  
Dr Anne Nugent
Martyn DM, McNulty BA, Nugent AP, Gibney MJ. (2013) 'Food additives and preschool children'. Proceedings of the Nutrition Society, 72 (109).  
Devlin NF, McNulty BA, Gibney MJ, Thielecke F, Smith H, Nugent AP (2013) 'Wholegrain intakes in the diets of Irish children and teenagers'. British Journal of Nutrition, 110 (2):354-362.  
Devlin UM, McNulty BA, Nugent AP, Gibney MJ. (2012) 'The use of cluster analysis to derive dietary patterns: methodological considerations, reproducibility, validity and the effect of energy mis-reporting'. Proceedings of the Nutrition Society.  
Professor John O'Doherty
Walsh, Ann M and Sweeney, Torres and Bahar, Bojlul and O'Doherty, John V (2013) 'Multi-functional roles of chitosan as a potential protective agent against obesity'. PLoS ONE, 8 (1).  
Bahar, Bojlul and O'Doherty, John V and O'Doherty, Alan M and Sweeney, Torres (2013) 'Chito-Oligosaccharide Inhibits the De-Methylation of a CpG Island within the Leptin (LEP) Promoter during Adipogenesis of 3T3-L1 Cells'. PLoS ONE, 8 (3).  
Murphya, Padraigin and Bello, Fabio Dal and O'Doherty, John and Arendt, Elke K and Sweeney, Torres and Coffey, Aidan (2013) 'The effects of liquid versus spray-dried Laminaria digitata extract on selected bacterial groups in the piglet gastrointestinal tract (GIT) microbiota'. Anaerobe.  
Hamill, Ruth M and Aslan, Ozlem and Mullen, Anne M and O'Doherty, John V and McBryan, Jean and Morris, Dermot G and Sweeney, Torres (2013) 'Transcriptome analysis of porcine M. semimembranosus divergent in intramuscular fat as a consequence of dietary protein restriction'. BMC Genomics, 14 (1).  
Murphy, P and Dal Bello, F and O'Doherty, J and Arendt, EK and Sweeney, T and Coffey, A (2013) 'Analysis of bacterial community shifts in the gastrointestinal tract of pigs fed diets supplemented with $\beta$-glucan from Laminaria digitata, Laminaria hyperborea and Saccharomyces cerevisiae'. animal, :1-9.  
Leliveld, LMC and Riemensperger, AV and Gardiner, GE and O'Doherty, JV and Lynch, PB and Lawlor, PG (2013) 'Effect of weaning age and postweaning feeding programme on the growth performance of pigs to 10 weeks of age'. Livestock Science.  
Moroney, NC and O'Grady, MN and O'Doherty, JV and Kerry, JP (2013) 'Effect of a brown seaweed (< i> Laminaria digitata) extract containing laminarin and fucoidan on the quality and shelf-life of fresh and cooked minced pork patties'. Meat science.  
Walsh, AM and Sweeney, T and O'Shea, CJ and Doyle, DN and O'Doherty, JV and others (2013) 'Effect of dietary laminarin and fucoidan on selected microbiota, intestinal morphology and immune status of the newly weaned pig'. Br J Nutr, 26:1-9.  
Murphy P, Dal Bello F, O'Doherty J, Arendt EK, Sweeney T, Coffey A (2013) 'Analysis of bacterial community shifts in the gastrointestinal tract of pigs fed diets supplemented with β-glucan from Laminaria digitata, Laminaria hyperborea and Saccharomyces cerevisiae'. Animal, 7 (7):1079-1087.  
Murphya P, Dal Bello F, O'Doherty J, Arendt EK, Sweeney T, Coffey A (2013) 'The effects of liquid versus spray-dried Laminaria digitata extract on selected bacterial groups in the piglet gastrointestinal tract (GIT) microbiota'. Anaerobe, 21:1-8.  
O'Shea, CJ and Sweeney, T. and Bahar, B. and Ryan, MT and Thornton, K. and O'Doherty, JV (2012) 'Indices of gastrointestinal fermentation and manure emissions of growing-finishing pigs as influenced through singular or combined consumption of Lactobacillus plantarum and inulin'. Journal of Animal Science, 90 (11):3848-3857.  
Murphy, P. and Bello, F.D. and O'Doherty, J. and Arendt, E.K. and Sweeney, T. and Coffey, A. (2012) 'Effects of cereal beta-glucans and enzyme inclusion on the porcine gastrointestinal tract microbiota'. Anaerobe.  
Professor Colm O'Donnell
M. Zhao, C.P. O'Donnell, G. Downey (2013) 'Detection of offal adulteration in beefburgers using near infrared reflectance spectroscopy and multivariate modelling'. Journal of Near Infrared Spectroscopy, 21 (4):237-248.  
S.Kadam, B. Tiwari, C.P. O'Donnell (2013) 'Application of Novel Extraction Technologies for Bioactives from Marine Algae'. Journal of Agricultural and Food Chemistry, 61 (20):4667-4675.  
U. Tiwari, E. Cummins, N Brunton, C. O'Donnell, E Gallagher (2013) 'A comparison of oat flour and oat bran-based bread formulations'. British Food Journal, 115 (2-3):300-313.  
L.Agelet, A. Gowen, C.Hurburgh Jr. and C.P. O'Donnell (2012) 'Feasibility of conventional and Roundup Ready soybeans discrimination by different near infrared reflectance technologies'. Food Chemistry, 134 (2):1165-1172.  
Esquerre C., Gowen A., Downey G. and O'Donnell, C.P. (2012) 'Wavelength selection for development of a near infrared imaging system for early detection of bruise damage in mushrooms (Agaricus bisporus)'. Journal of Near Infrared Spectroscopy, 20 (5):537-546.  
Professor Dolores O'Riordan
Harbourne, N. and Marete, E. and Jacquier, J.C. and O'Riordan, D. (2013) 'Stability of phytochemicals as sources of anti-inflammatory nutraceuticals in beverages - A review'. Food Research International, 50 (2):480-486. Available Online  
Marete, EN,Jacquier, JC,O'Riordan, D (2013) 'Effect of processing temperature on the stability of parthenolide in acidified feverfew infusions'. Food Research International, 50:593-596.  
Drummond, EM,Harbourne, N,Marete, E,Martyn, D,Jacquier, JC,O'Riordan, D,Gibney, ER (2013) 'Inhibition of Proinflammatory Biomarkers in THP1 Macrophages by Polyphenols Derived From Chamomile, Meadowsweet and Willow bark'. Phytotherapy research: PTR, 27:588-594.  
Dr Aifric O'Sullivan
O'Sullivan A, Armstrong P, Schuster GU, Pedersen TL, Allayee H, Stephensen CB, Newman JW (2013) 'Habitual Diets Rich in Dark-Green Vegetables Are Associated with an Increased Response to omega-3 Fatty Acid Supplementation in Americans of African Ancestry'. Journal of Nutrition.  
O'Sullivan A, He X, McNiven EM, Haggarty NW, Lönnerdal B, Slupsky CM (2013) 'Early diet impacts infant rhesus gut microbiome, immunity, and metabolism'. Journal of Proteome Research, 12 (6):2833-2845.  
O'Sullivan A, He X, McNiven EM, Hinde K, Haggarty NW, Lonnerdal B, Slupsky CM (2013) 'Metabolomic phenotyping validates the infant Rhesus Monkey as a model of human infant metabolism'. Journal of Pediatric Gastroenterology and Nutrition, 56 (4):355-63.  
Neal CM, Hunter AM, Brennan L, O'Sullivan A, Hamilton DL, De Vito G, Galloway SD (2013) 'Six weeks of a polarized training-intensity distribution leads to greater physiological and performance adaptations than a threshold model in trained cyclists'. Journal of Applied Physiology, 114 (4):461-471.  
O'Sullivan A, Willoughby RE, Mishchuk D, Alcarraz B, Cabezas-Sanchez C, Condori RE, David D, Encarnacion R, Fatteh N, Fernandez J, Franka R, Hedderwick S, McCaughey C, Ondrush J, Paez-Martinez A, Rupprecht C, Velasco-Villa A, Slupsky CM (2012) 'Metabolomics of cerebrospinal fluid from humans treated for rabies'. Journal of Proteome Research.  
Mr Mick O'Sullivan
Contini C, lvarez, R, O'Sullivan M, Dowling D, Gargan S, and Monahan FJ. (2013) 'Effect of an active packaging with Citrus extract on lipid oxidation and sensory quality of cooked turkey meat'. Meat Science. Available Online  
Contini C, Valzacchi S, O'Sullivan M, Simoneau C, Dowling DP and Monahan FJ (2013) 'Overall Migration and Kinetics of Release of Antioxidant Compounds from Citrus Extract-Based Active Packaging'. Journal of Agricultural and Food Chemistry. Available Online  
Dr Karina Pierce
Boland, T.M., Quinlan, C., Pierce, K.M., Lynch, M.B., Kelly, A.K and Purcell, P. J. (2013) 'The effect of pasture pre-grazing herbage mass on methane emissions, ruminal fermentation, and average daily gain of grazing beef heifers'. Journal of Animal Science, 91:3867-3874.  
T. M. Boland, C. Quinlan, K. M. Pierce, M. B. Lynch, A. K. Kelly and P. J. Purcell (2013) 'The effect of pasture pre-grazing herbage mass on methane emissions, ruminal fermentation, and average daily gain of grazing beef heifers'. Livestock Science.  
B. McCarthy, L.Delaby, K.M Pierce, A. Brennan and B.Horan (2013) 'The effect of stocking rate and calving date on milk production of Holstein Friesian dairy cows'. Livestock Science.  
McDonald, R., K.M. Pierce, R. Fealy, B. Horan (2013) 'Characteristics, intentions and expectations of new entrant dairy farmers entering the Irish dairy industry through the New Entrant Scheme'. International Journal of Agricultural Management.  
Al Ibrahim, R. M., Whelan, S. J., Pierce, K. M., Campion, D. P., Gath, V. P., Mulligan, F. J. (2013) 'Effect of timing of post-partum introduction to pasture and supplementation with Saccharomyces cerevisiae on milk production, metabolic status, energy balance and some reproductive parameters in early lactation dairy cows'. Journal Of Animal Physiology And Animal Nutrition, 97:105-114.  
Whelan, S. J., Mulligan, F. J., Callan, J. J., Flynn, B., Pierce, K. M. (2013) 'Effect of forage source and a supplementary methionine hydroxyl analogue on rumen fermentation parameters in lactating dairy cows offered a low crude protein diet'. Animal Feed Science and Technology, 183:62-66.  
McDonald, R., L. Shalloo, K.M. Pierce, B. Horan. 2013 (2013) 'Evaluating expansion strategies for start-up European Union dairy farm businesses'. Journal of Dairy Science.  
Meade, G., Pierce, K., O'Doherty, J.V., Mueller, C., Hepp, S., Lanigan, G. and Mc Cabe, T. (2012) 'Gaseous emissions of methane and carbon dioxide following land application of high and low nitrogen pig manures to winter wheat at three key crop growth stages'. Journal of Agricultural Science.  
Professor Helen Roche
Phillips CM, Tierney AC, Perez-Martinez P, Defoort C, Blaak EE, Gjelstad IM, Lopez-Miranda J, Kiec-Klimczak M, Malczewska-Malec M, Drevon CA, Hall W, Lovegrove JA, Karlstrom B, Risérus U, Roche HM. (2013) 'Obesity and Body Fat Classification in the Metabolic Syndrome: Impact on Cardiometabolic Risk Metabotype'. Obesity,.  
Camargo A, Rangel-Zúñiga OA, Peña-Orihuela P, Marín C, Pérez-Martínez P, Delgado-Lista J, Gutierrez-Mariscal FM, Malagón MM, Roche HM, Tinahones FJ, Lopez-Miranda J. (2013) 'Postprandial changes in the proteome are modulated by dietary fat in patients with metabolic syndrome'. Journal of Nutritional Biochemistry, 24:318-324.  
Morris C, Gibney M, Roche H, Ryan M, Grada O, De Vito G, Gibney E, Brennan L (2013) 'The relationship between aerobic fitness level and metabolic profiles in healthy adults'. Molecular Nutrition and Food Research.  
Perez-Martinez P, Garcia-Rios A, Delgado-Lista J, Gjelstad IM, Gibney J, Kie?-Wilk B, Camargo A, Helal O, Karlström B, Blaak EE, Hall W, Risérus U, Dembi?ska-Kie? A, Defoort C, Saris WH, Lovegrove JA, Drevon CA, Roche HM, Lopez-Miranda J. (2013) 'Gene-nutrient interactions on the phosphoenolpyruvate carboxykinase influence insulin sensitivity in metabolic syndrome subjects'. Clinical Nutrition, Aug;32(4):630-5 :630-635.  
Camargo A, Meneses ME, Perez-Martinez P, Delgado-Lista J, Jimenez-Gomez Y, Cruz-Teno C, Tinahones FJ, Paniagua JA, Perez-Jimenez F, Roche HM, Malagon MM, Lopez-Miranda J (2013) 'Dietary fat differentially influences the lipids storage on the adipose tissue in metabolic syndrome patients'. The Journal of nutrition.  
Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L (2013) 'Identification of differential responses to an oral glucose tolerance test in healthy adults'. PLoS ONE, 8 (8).  
McAllan L, Keane D, Schellekens H, Roche HM, Korpela R, Cryan JF, Nilaweera KN. (2013) 'Whey protein isolate counteracts the effects of a high-fat diet on energy intake and hypothalamic and adipose tissue expression of energy balance-related genes'. British Journal of Nutrition, 4:1-13.  
Yubero-Serrano EM, Delgado-Lista J, Peña-Orihuela P, Perez-Martinez P, Fuentes F, Marin C, Tunez I, Tinahones FJ, Perez-Jimenez F, Roche HM, Lopez-Miranda J (2013) 'Oxidative stress is associated with the number of components of metabolic syndrome: LIPGENE study'. Experimental & molecular medicine, 45.  
Morine MJ, Toomey S, McGillicuddy FC, Reynolds CM, Power KA, Browne JA, Loscher C, Mills KH, Roche HM. (2013) 'Network analysis of adipose tissue gene expression highlights altered metabolic and regulatory transcriptomic activity in high-fat-diet-fed IL-1RI knockout mice'. Journal of Nutritional Biochemistry, 24:788-799.  
Phelan, N,O'Connor, A,Tun, TK,Correia, N,Boran, G,Roche, HM,Gibney, J (2013) 'Leucocytosis in women with polycystic ovary syndrome (PCOS) is incompletely explained by obesity and insulin resistance'. Clinical Endocrinology, 78:107-113.  
Ryan, MF,Grada, CO,Morris, C,Segurado, R,Walsh, MC,Gibney, ER,Brennan, L,Roche, HM,Gibney, MJ (2013) 'Within-person variation in the postprandial lipemic response of healthy adults'. American Journal of Clinical Nutrition, 97:261-267.  
Reynolds, CM,Toomey, S,McBride, R,McMonagle, J,Morine, MJ,Belton, O,Moloney, AP,Roche, HM (2013) 'Divergent effects of a CLA-enriched beef diet on metabolic health in ApoE(-/-) and ob/ob mice'. J Nutr Biochem, 24:401-411.  
McArdle MA, Finucane OM, Connaughton RM, McMorrow AM, Roche HM (2013) 'Mechanisms of obesity-induced inflammation and insulin resistance: insights into the emerging role of nutritional strategies'. Frontiers in endocrinology, 4.  
Finucane OM, Reynolds CM, McGillicuddy FC, Roche HM (2012) 'Insights into the role of macrophage migration inhibitory factor in obesity and insulin resistance'. The Proceedings of the Nutrition Society, 71 (4):622-633.  
Borgeson, E., McGillicuddy, F. C., Harford, K. A., Corrigan, N., Higgins, D. F., Maderna, P., Roche, H. M., Godson, C. (2012) 'Lipoxin A4 attenuates adipose inflammation'. FASEB J, 26 (10):4287-94. Available Online  
Allott EH, Oliver E, Lysaght J, Gray SG, Reynolds JV, Roche HM, Pidgeon GP (2012) 'The SGBS cell strain as a model for the in vitro study of obesity and cancer'. Clinical & translational oncology: official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico, 14 (10):774-782.  
Oliver E, McGillicuddy FC, Harford KA, Reynolds CM, Phillips CM, Ferguson JF, Roche HM (2012) 'Docosahexaenoic acid attenuates macrophage-induced inflammation and improves insulin sensitivity in adipocytes-specific differential effects between LC n-3 PUFA'. The Journal of nutrition, 23 (9):1192-1200.  
Dr Amalia Scannell
Crofton, E.C., Markey, A., Scannell, A.G.M. (2013) 'Consumers' expectations and needs towards healthy cereal based snacks: An exploratory study among Irish adults'. British Food Journal, 115 (8):1130--1148.  
O'Brien, S.A., Feeney, E.L., Scannell, A.G.M., Markey, A., Gibney, E.R. (2013) 'Bitter taste perception and dietary intake patterns in Irish children'. Journal Of Nutrigenetics And Nutrigenomics, 6 (1):43-58.  
Ktenioudaki, A., Crofton, E., Scannell, A.G.M., Hannon, J.A., Kilcawley, K.N., Gallagher, E. (2013) 'Sensory properties and aromatic composition of baked snacks containing brewer's spent grain'. Journal of cereal science, 57 (3):384-390.  
Feng, Y.-Z., Elmasry, G., Sun, D.-W., Scannell, A.G.M., Walsh, D., Morcy, N. (2013) 'Near-infrared hyperspectral imaging and partial least squares regression for rapid and reagentless determination of Enterobacteriaceae on chicken fillets'. Food Chemistry, 138 (2-3):1829--1836.  
Professor Da-Wen Sun
Feng, Y.-Z., Elmasry, G., Sun, D.-W., Scannell, A.G.M., Walsh, D., Morcy, N. (2013) 'Near-infrared hyperspectral imaging and partial least squares regression for rapid and reagentless determination of Enterobacteriaceae on chicken fillets'. Food Chemistry, 138 (2-3):1829--1836.  
Professor Torres Sweeney
Murphy, P and Dal Bello, F and O'Doherty, J and Arendt, EK and Sweeney, T and Coffey, A (2013) 'Analysis of bacterial community shifts in the gastrointestinal tract of pigs fed diets supplemented with $\beta$-glucan from Laminaria digitata, Laminaria hyperborea and Saccharomyces cerevisiae'. animal, :1-9.  
Walsh, AM and Sweeney, T and O'Shea, CJ and Doyle, DN and O'Doherty, JV and others (2013) 'Effect of dietary laminarin and fucoidan on selected microbiota, intestinal morphology and immune status of the newly weaned pig'. Br J Nutr, 26:1-9.  
Hamill RM, Aslan O, Mullen AM, O'Doherty JV, McBryan J, Morris DG, Sweeney T (2013) 'Transcriptome analysis of porcine M. semimembranosus divergent in intramuscular fat as a consequence of dietary protein restriction'. Genomics, 14.  
Murphy P, Dal Bello F, O'Doherty J, Arendt EK, Sweeney T, Coffey A (2013) 'Analysis of bacterial community shifts in the gastrointestinal tract of pigs fed diets supplemented with β-glucan from Laminaria digitata, Laminaria hyperborea and Saccharomyces cerevisiae'. Animal, 7 (7):1079-1087.  
Murphya P, Dal Bello F, O'Doherty J, Arendt EK, Sweeney T, Coffey A (2013) 'The effects of liquid versus spray-dried Laminaria digitata extract on selected bacterial groups in the piglet gastrointestinal tract (GIT) microbiota'. Anaerobe, 21:1-8.  
Walsh AM, Sweeney T, O'Shea CJ, Doyle DN, O'Doherty JV (2013) 'Effect of dietary laminarin and fucoidan on selected microbiota, intestinal morphology and immune status of the newly weaned pig'. The Journal of nutrition:1-9.  
Monaghan ì Byrne B, Fanning S, Sweeney T, McDowell D, Bolton DJ (2013) 'Serotypes and virulence profiles of atypical enteropathogenic Escherichia coli (EPEC) isolated from bovine farms and abattoirs'. Journal of Applied Microbiology, 114 (2):595-603.  
Walsh, AM,Sweeney, T,Bahar, B,Flynn, B,O'Doherty, JV (2013) 'The effects of supplementing varying molecular weights of chitooligosaccharide on performance, selected microbial populations and nutrient digestibility in the weaned pig'. Animal, 7:571-579.  
Bahar, B,O'Doherty, JV,O'Doherty, AM,Sweeney, T (2013) 'Chito-Oligosaccharide Inhibits the De-Methylation of a 'CpG' Island within the Leptin (LEP) Promoter during Adipogenesis of 3T3-L1 Cells'. PLoS ONE, 8.  
Bahar B, O'Doherty JV, O'Doherty AM, Sweeney T (2013) 'Chito-oligosaccharide inhibits the de-methylation of a 'CpG' island within the leptin (LEP) promoter during adipogenesis of 3T3-L1 cells'. PLoS ONE, 8 (3).  
Walsh AM, Sweeney T, Bahar B, O'Doherty JV (2013) 'Multi-functional roles of chitosan as a potential protective agent against obesity'. PLoS ONE, 8 (1).  
Mukhopadhya A, O'Doherty JV, Smith A, Bahar B, Sweeney T. (2012) 'The microbiological and immunomodulatory effects of spray-dried versus wet dietary supplementation of seaweed extract in the pig gastrointestinal tract'. Journal of Animal Science, 90 (4):28-30.  
Monaghan A, Byrne B, Fanning S, Sweeney T, McDowell D, Bolton DJ (2012) 'Serotypes and virulotypes of non-O157 shiga-toxin producing Escherichia coli (STEC) on bovine hides and carcasses'. Food Microbiology, 32 (2):223-229.  
Hamill RM, McBryan J, McGee C, Mullen AM, Sweeney T, Talbot A, Cairns MT, Davey GC (2012) 'Functional analysis of muscle gene expression profiles associated with tenderness and intramuscular fat content in pork'. Meat Sci, 92 (4):440-450.  
Hamill, R.M., McBryan, J., McGee, C., Mullen, A.M., Sweeney, T., Talbot, A., Cairns, M.T., Davey, G.C. (2012) 'Functional analysis of muscle gene expression profiles associated with tenderness and intramuscular fat content in pork'. Meat Science, 92 (4):440-450.  
Monaghan, n, Byrne, B., Fanning, S., Sweeney, T., McDowell, D., Bolton, D.J. (2012) 'Serotypes and virulotypes of non-O157 shiga-toxin producing Escherichia coli (STEC) on bovine hides and carcasses'. Food microbiology, 32 (2):223-229.  
Ryan MT, O'Shea CJ, Collins CB, O'Doherty JV, Sweeney T (2012) 'Effects of dietary supplementation with Laminaria hyperborea, Laminaria digitata, and Saccharomyces cerevisiae on the IL-17 pathway in the porcine colon'. Journal of Animal Science, 90 Suppl 4:263-265.  
Ryan MT, Collins CB, O'Doherty JV, Sweeney T (2012) 'Effects of dietary Beta-glucans supplementation on cytokine expression in porcine liver'. Journal of animal science, 90 Suppl 4:40-42.  
Bahar B, O'Doherty JV, Hayes M, Sweeney T (2012) 'Extracts of brown seaweeds can attenuate the bacterial lipopolysaccharide-induced pro-inflammatory response in the porcine colon ex vivo'. Journal of Animal Science, 90 Suppl 4:46-48.  
Mukhopadhya A, O'Doherty JV, Smith A, Bahar B, Sweeney T (2012) 'The microbiological and immunomodulatory effects of spray-dried versus wet dietary supplementation of seaweed extract in the pig gastrointestinal tract'. Journal of Animal Science, 90 Suppl 4:28-30.  
Bahar B, O'Doherty JV, Sweeney T (2012) 'Assessment of RNA integrity in the postmortem pig colonic tissue ex vivo'. Journal of Animal Science, 90 Suppl 4:22-24.  
O'Shea CJ, Sweeney T, Bahar B, Ryan MT, Thornton K, O'Doherty JV (2012) 'Indices of gastrointestinal fermentation and manure emissions of growing-finishing pigs as influenced through singular or combined consumption of Lactobacillus plantarum and inulin'. Journal of Animal Science, 90 (11):3848-3857.  
O'Shea, CJ and Sweeney, T. and Bahar, B. and Ryan, MT and Thornton, K. and O'Doherty, JV (2012) 'Indices of gastrointestinal fermentation and manure emissions of growing-finishing pigs as influenced through singular or combined consumption of Lactobacillus plantarum and inulin'. Journal of Animal Science, 90 (11):3848-3857.  
Walsh, A.M., Sweeney, T., Bahar, B., Flynn, B., O'Doherty, J.V. (2012) 'The effect of chitooligosaccharide supplementation on intestinal morphology, selected microbial populations, volatile fatty acid concentrations and immune gene expression in the weaned pig'. Animal, 6 (10):1620-1626.  
Sweeney T, Collins CB, Reilly P, Pierce KM, Ryan M, O'Doherty JV (2012) 'Effect of purified Beta-glucans derived from Laminaria digitata, Laminaria hyperborea and Saccharomyces cerevisiae on piglet performance, selected bacterial populations, volatile fatty acids and pro-inflammatory cytokines in the gastrointestinal tract of pigs'. Journal of Nutrition, 108 (7):1226-1234.  
Murphy, P. and Bello, F.D. and O'Doherty, J. and Arendt, E.K. and Sweeney, T. and Coffey, A. (2012) 'Effects of cereal beta-glucans and enzyme inclusion on the porcine gastrointestinal tract microbiota'. Anaerobe.  
Walsh AM, Sweeney T, Bahar B, Flynn B, O'Doherty JV (2012) 'The effect of chitooligosaccharide supplementation on intestinal morphology, selected microbial populations, volatile fatty acid concentrations and immune gene expression in the weaned pig'. Animal, 6 (10):1620-1626.  
Walsh AM, Sweeney T, Bahar B, Flynn B, O'Doherty JV (2012) 'The effects of supplementing varying molecular weights of chitooligosaccharide on performance, selected microbial populations and nutrient digestibility in the weaned pig'. Animal,:1-9.  
Murphy P, Bello FD, O'Doherty JV, Arendt EK, Sweeney T, Coffey A (2012) 'Effects of cereal β-glucans and enzyme inclusion on the porcine gastrointestinal tract microbiota'. Anaerobe.  
Professor Patrick Gerard Wall
Rutsaert, P,Regan, A,Pieniak, Z,McConnon, A,Moss, A,Wall, P,Verbeke, W (2013) 'The use of social media in food risk and benefit communication'. Trends in Food Science & Technology, 30:84-91.  
Dr Paul Whyte
Haughton, P.N., Lyng, J., Fanning, S., Whyte, P. (2013) 'Potential of a commercially available water acidification product for reducing Campylobacter in broilers prior to slaughter'. Poultry Science, 54:319-324.  
Thomas, K.M., McCann, M.S., Collery, M.M., Whyte, P., McDowell, D.A., Duffy, G. (2013) 'Transfer of verocytotoxigenic Escherichia coli O157, O26, O111, O103 and O145 from fleece to carcass during sheep slaughter in an Irish export abattoir'. Food Microbiology, 34:38-45.  
Halpin, R.M., Cregenzan-Alberti, O., Whyte, P., Lyng, J.G., Noci, F. (2013) 'Combined treatment with mild heat, manothermosonication and pulsed electric fields reduces microbial growth in milk'. Food Control, 34:364-371.  
Thomas, KM,McCann, MS,Collery, MM,Moschonas, G,Whyte, P,McDowell, DA,Duffy, G (2013) 'Transfer of verocytotoxigenic Escherichia coli O157, O26, O111, O103 and O145 from fleece to carcass during sheep slaughter in an Irish export abattoir'. Food Microbiology, 34:38-45.  
Haughton, P.N., Lyng, J., Cronin, D., Morgan, D., Fanning, S., Whyte, P. (2012) 'Susceptibility of Campylobacter to high intensity near ultraviolet/visible 3955nm light and its effectiveness for the decontamination of raw chicken and contact surfaces'. International Journal of Food Microbiology, 159 (3):267-273.  


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Other Journals

Dr Karina Pierce
Whelan, S. J., Mulligan, F. J., Pierce, K. M (2013) 'Nitrogen efficiency in contrasting dairy production systems' Advances in Animal Biosciences.  
Pierce, K. M., Al Ibrahim, R. M., Palladino, R. A., Whelan, S. J., Mulligan, F. J. (2013) 'Short Communication: Effect of timing of introduction to pasture post calving and supplementation with Saccharomyces cerevisiae on milk fatty acid profiles in early lactation dairy cows' Food and Nutritional Sciences .  
Professor Patrick Gerard Wall
Shan, C; Regan, A; De Brun, A; Barnett, J; van der Sanden, M; Wall, P; McConnon, A (2013) 'Food crisis coverage by social and traditional media: A case study of the 2008 Irish dioxin crisis' Public Understanding of Science.  


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Conference Publications

Dr Enda Cummins
Cummins E. (2012) Nanotechnologies in the food industry Global Food Safety - Solutions for today and tomorrow, 5  
Professor Séamus Fanning
Burns A., Shore A., Gibbons J., McManus B., Abbott Y., Markey B., Murphy A., Coleman D., Fanning S., Gutierrez M., Egan J., Leonard F.. (2013) Methicillin-resistant and susceptible Staphylococcus aureus in pig herds in Ireland Society for General Microbiology, Dublin,  
Dr Kevin McDonnell
Ger Devlin and Radomir Klvac (2013) Opportunities for developing excavator based cable logging operations in Ireland - A productivity analysis Forest Operations in Mountaineous Conditions - IUFRO 3.06, Oslo, Norway,  
Ger Devlin (2013) Bioenergy - Strategies and obstacles - How to reach 2020 targets Mendel University (guest lecturer), Mendel University, Brno, Czech Republic,  
Professor Frank Monahan
Monahan FJ, Moloney AP and Schmidt O. (2013) Meat authentication: determination of the dietary background and geographical origin of meats 50th Annual Meeting of the Brazilian Society of Animal Science, Campinas, Brazil,  
Monahan FJ, Moloney AP and Schmidt O (2013) Authenticity and traceability of grassland production and products . In: JLP Daniel, MC Santos, LG Nussio eds. 3rd International Symposium on Forage Quality and Conservation, Campinas, Brazil, 169 - 190  
Professor Shane Ward
Ger Devlin and Radomir Klvac (2013) Opportunities for developing excavator based cable logging operations in Ireland - A productivity analysis Forest Operations in Mountaineous Conditions - IUFRO 3.06, Oslo, Norway,  
Ger Devlin (2013) Bioenergy - Strategies and obstacles - How to reach 2020 targets Mendel University (guest lecturer), Mendel University, Brno, Czech Republic,  
Corkery, G.; Ward, S.; Kenny, C; Hemmingway, P. (2013) Monitoring environmental parameters in poultry production facilities Computer Aided Process Engineering - CAPE Forum 2013,  


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Other Publications

Dr Lorraine Brennan
Lindsay, KL,Walsh, CA,Brennan, L,McAuliffe, FM (2013) Probiotics in pregnancy and maternal outcomes: a systematic review. Reviews.  
Professor John O'Doherty
O'sullivan, J.T. and Gallagher, M. and O'doherty, J. and Sweeney, T. (2012) The Improvement of Gastrointestinal Health, Immunity and Performance by Dietary Intervention. .  
Professor Dolores O'Riordan
Harbourne, N,Marete, E,Jacquier, JC,O'Riordan, D (2013) Stability of phytochemicals as sources of anti-inflammatory nutraceuticals in beverages - A review. Reviews.  
Professor Helen Roche
McAllan, L,Cotter, PD,Roche, HM,Korpela, R,Nilaweera, KN (2013) Impact of leucine on energy balance. Reviews.  
Professor Torres Sweeney
O'sullivan, J.T. and Gallagher, M. and O'doherty, J. and Sweeney, T. (2012) The Improvement of Gastrointestinal Health, Immunity and Performance by Dietary Intervention. .  


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