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'What makes a good egg?'. Image by Dr Lynne O'Shea.

'What makes a good egg?'. Image by Dr Lynne O'Shea.

UCD School of Agriculture & Food Science - Research Publications 2013/14

Below is the list of research publications for the UCD School of Agriculture & Food Science in the academic year 2013/14.


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Book Chapters

Professor James I Burke
Martina Newell-McGloughlin, James Burke (2014) 'Regulatory challenges to commercializing the products of ag biotech' In: Neal K. Van Alfen (eds). Encyclopedia of Agriculture and Food Systems. USA: Elsevier.  
Martina Newell Mc Gloughlin, James Burke (2014) 'Biotechnology Crop Adoption: Potential and Challenges of Genetically Improved Crops' In: Neal K. Van Alfen (eds). Encyclopedia of Agriculture and Food Systems. USA: Elsevier. Available Online  
Dr Margherita Gioria
Gioria, M (2014) 'Habitats' In: Yee, D (eds). Ecology, Systematics and the Natural History of Predaceous Diving Beetles (Coleoptera: Dytiscidae). New York: Springer Science + Business Media B.V.  
Dr Olga Grant
Grant, OM; Surbanovski, N. (2014) 'The emerging role of aquaporins in plant tolerance of abiotic stress' In: Ahmad, P.; Rasool, S (eds). Emerging Technologies and management of crop stress tolerance Volume II A sustainable approach. Amsterdam: Elsevier, pp.431-447  
Professor Simon John More
Sheridan, M., Good, M. More, S.J., Gormley, E. (2014) 'The impact of an integrated wildlife and bovine tuberculosis eradication program in Ireland (Chapter 28)' In: Thoen, C.O., Steele, J.J., Kaneene, J.B (eds). Zoonotic tuberculosis: Mycobacterium bovis and other pathogenic mycobacteria, Third Edition. Ames, Iowa, USA: John Wiley & Sons, pp.323-340  
Professor Maarten Nieuwenhuis
Doyle, M., Clifford, B. and Nieuwenhuis, M. (2014) 'The structure and use of computer-based tools for forest management in Ireland' In: Borges, J., Nordstrom, E., Garcia-Gonzalo, J., Hujala, T. and Trasobares, A (eds). Computer-based tools for supporting forest management - the experience and expertise world-wide. Umea, Sweden: Sveriges landbruksuniversitet, pp.208-226 Available Online  


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Peer Reviewed Journals

Dr Bojlul Bahar
Bahar B, Harrison SM, Moloney AP, Monahan FJ and Schmidt O (2014) 'Isotopic turnover of carbon and nitrogen in bovine blood fractions and inner organs'. Rapid Communications in Mass Spectrometry, 28 (9):1011-1018. Available Online  
Dr Tommy Boland
Deighton MH, O'Donovan M, Lewis E, Beecher M, Buckley F, Waters SM, Boland TM, Enriquez-Hidalgo D (2014) 'Gastrointestinal tract size, total-tract digestibility, and rumen microflora in different dairy cow genotypes'. Journal of Dairy Science, 97 (6):3906-3917.  
Ganche E, Delaby L, O'Donovan M, Boland TM, Kennedy E (2014) 'Short-term response in milk production, dry matter intake, and grazing behavior of dairy cows to changes in postgrazing sward height'. Journal of Dairy Science, 97 (5):3028-3041.  
O'Neill BF, Ruelle E, O'Donovan M, Shalloo L, Mulligan FJ, Boland TM, Delaby L, Delagarde R, Lewis E (2014) 'Adaptation and evaluation of the GrazeIn model of grass dry matter intake and milk yield prediction for grazing dairy cows'. Animal, 8 (4):596-609.  
Wims CM, Delaby L, Boland TM, O'Donovan M (2014) 'Effect of pre-grazing herbage mass on dairy cow performance, grass dry matter production and output from perennial ryegrass (Lolium perenne L.) pastures'. Animal, 8 (1):141-151.  
Ganche, E., Delaby, L., O'Donovan, M., Boland, T.M., Galvin, N. and Kennedy, E. 2013. (2013) 'Post-grazing sward height imposed during the first 10 weeks of lactation: Influence on early and total lactation dairy cow production, and spring and annual sward characteristics'. Livestock Science, 157 :299-311.  
Beecher, M., Hennessy, D., Boland, T.M., McEvoy, M., O'Donovan, M., Lewis, E. (2013) 'The variation in morphology of perennial ryegrass cultivars throughout the grazing season and effects on organic matter digestibility'. Grass and Forage Science.  
Dr Lorraine Brennan
O'Gorman, A. and Morris, C. and Ryan, M. and O'Grada, C.M. and Roche, H.M. and Gibney, E.R. and Gibney, M.J. and Brennan, L. (2014) 'Habitual dietary intake impacts on the lipidomic profile'. Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences, 966 :140-146. Available Online  
Lindsay, K.L. and Brennan, L. and McAuliffe, F.M. (2014) 'Acceptability of and compliance with a probiotic capsule intervention in pregnancy'. International Journal of Gynecology and Obstetrics, 125 (3):279-280. Available Online  
Forster, H. and Fallaize, R. and Gallagher, C. and O'Donovan, C.B. and Woolhead, C. and Walsh, M.C. and Macready, A.L. and Lovegrove, J.A. and Mathers, J.C. and Gibney, M.J. and Brennan, L. and Gibney, E.R. (2014) 'Online dietary intake estimation: The food4me food frequency questionnaire'. Journal of Medical Internet Research, 16 (6). Available Online  
O'Grada, C.M. and Morine, M.J. and Morris, C. and Ryan, M. and Dillon, E.T. and Walsh, M. and Gibney, E.R. and Brennan, L. and Gibney, M.J. and Roche, H.M. (2014) 'PBMCs reflect the immune component of the WAT transcriptome-Implications as biomarkers of metabolic health in the postprandial state'. Molecular Nutrition and Food Research, 58 (4):808-820. Available Online  
Perez-Cornago, A. and Brennan, L. and Ibero-Baraibar, I. and Hermsdorff, H.H.M. and O'Gorman, A. and Zulet, M.A. and Alfredo Martínez, J. (2014) 'Metabolomics identifies changes in fatty acid and amino acid profiles in serum of overweight older adults following a weight loss intervention'. Journal of Physiology and Biochemistry, 70 (2):593-602. Available Online  
Nyamundanda, G. and Gormley, I.C. and Brennan, L. (2014) 'A dynamic probabilistic principal components model for the analysis of longitudinal metabolomics data'. Journal of the Royal Statistical Society. Series C: Applied Statistics.Available Online  
Lindsay, K.L. and Heneghan, C. and McNulty, B. and Brennan, L. and McAuliffe, F.M. (2014) 'Lifestyle and Dietary Habits of an Obese Pregnant Cohort'. Maternal and Child Health Journal.Available Online  
Ferguson, J.F. and Ryan, M.F. and Gibney, E.R. and Brennan, L. and Roche, H.M. and Reilly, M.P. (2014) 'Dietary isoflavone intake is associated with evoked responses to inflammatory cardiometabolic stimuli and improved glucose homeostasis in healthy volunteers'. Nutrition, Metabolism and Cardiovascular Diseases.Available Online  
Scalbert, A. and Brennan, L. and Manach, C. and Andres-Lacueva, C. and Dragsted, L.O. and Draper, J. and Rappaport, S.M. and Van Der Hooft, J.J.J. and Wishart, D.S. (2014) 'The food metabolome: A window over dietary exposure'. American Journal of Clinical Nutrition, 99 (6):1286-1308. Available Online  
Lindsay, K.L. and Kennelly, M. and Culliton, M. and Smith, T. and Maguire, O.C. and Shanahan, F. and Brennan, L. and McAuliffe, F.M. (2014) 'Probiotics in obese pregnancy do not reduce maternal fasting glucose: A double-blind, placebo-controlled, randomized trial (Probiotics in Pregnancy Study)'. American Journal of Clinical Nutrition, 99 (6):1432-1439. Available Online  
O'Doherty, A.M. and O'Gorman, A. and al Naib, A. and Brennan, L. and Daly, E. and Duffy, P. and Fair, T. (2014) 'Negative energy balance affects imprint stability in oocytes recovered from postpartum dairy cows'. Genomics.Available Online  
O'Gorman, A. and Morris, C. and Ryan, M. and O'Grada, C.M. and Roche, H.M. and Gibney, E.R. and Gibney, M.J. and Brennan, L. (2014) 'Habitual dietary intake impacts on the lipidomic profile'. Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences, 966 :140-146. Available Online  
Matoba, S. and Bender, K. and Fahey, A.G. and Mamo, S. and Brennan, L. and Lonergan, P. and Fair, T. (2014) 'Predictive value of bovine follicular components as markers of oocyte developmental potential'. Reproduction, Fertility and Development, 26 (2):337-345. Available Online  
Wallace, M. and Cottell, E. and Cullinane, J. and McAuliffe, F.M. and Wingfield, M. and Brennan, L. (2014) '1H NMR based metabolic profiling of day 2 spent embryo media correlates with implantation potential'. Systems Biology in Reproductive Medicine, 60 (1):58-63. Available Online  
Walsh, M.C. and McLoughlin, G.A. and Roche, H.M. and Ferguson, J.F. and Drevon, C.A. and Saris, W.H.M. and Lovegrove, J.A. and Risérus, U. and López-Miranda, J. and Defoort, C. and Kie?-Wilk, B. and Brennan, L. and Gibney, M.J. (2014) 'Impact of geographical region on urinary metabolomic and plasma fatty acid profiles in subjects with the metabolic syndrome across Europe: The LIPGENE study'. British Journal of Nutrition, 111 (3):424-431. Available Online  
Wallace, M. and Morris, C. and O'Grada, C.M. and Ryan, M. and Dillon, E.T. and Coleman, E. and Gibney, E.R. and Gibney, M.J. and Roche, H.M. and Brennan, L. (2014) 'Relationship between the lipidome, inflammatory markers and insulin resistance'. Molecular BioSystems, 10 (6):1586-1595. Available Online  
Lindsay, K.L. and Brennan, L. and McAuliffe, F.M. (2014) 'Acceptability of and compliance with a probiotic capsule intervention in pregnancy'. International Journal of Gynecology and Obstetrics, 125 (3):279-280. Available Online  
O'Grada, C.M. and Morine, M.J. and Morris, C. and Ryan, M. and Dillon, E.T. and Walsh, M. and Gibney, E.R. and Brennan, L. and Gibney, M.J. and Roche, H.M. (2014) 'PBMCs reflect the immune component of the WAT transcriptome-Implications as biomarkers of metabolic health in the postprandial state'. Molecular Nutrition and Food Research, 58 (4):808-820. Available Online  
Wallace, M. and Cottell, E. and Cullinane, J. and McAuliffe, F.M. and Wingfield, M. and Brennan, L. (2014) '1H NMR based metabolic profiling of day 2 spent embryo media correlates with implantation potential'. Systems Biology in Reproductive Medicine, 60 (1):58-63. Available Online  
Walsh, M.C. and McLoughlin, G.A. and Roche, H.M. and Ferguson, J.F. and Drevon, C.A. and Saris, W.H.M. and Lovegrove, J.A. and Risérus, U. and López-Miranda, J. and Defoort, C. and Kie?-Wilk, B. and Brennan, L. and Gibney, M.J. (2014) 'Impact of geographical region on urinary metabolomic and plasma fatty acid profiles in subjects with the metabolic syndrome across Europe: The LIPGENE study'. British Journal of Nutrition, 111 (3):424-431. Available Online  
Lindsay, K.L. and Heneghan, C. and McNulty, B. and Brennan, L. and McAuliffe, F.M. (2014) 'Lifestyle and Dietary Habits of an Obese Pregnant Cohort'. Maternal and Child Health Journal.Available Online  
Ferguson, J.F. and Ryan, M.F. and Gibney, E.R. and Brennan, L. and Roche, H.M. and Reilly, M.P. (2014) 'Dietary isoflavone intake is associated with evoked responses to inflammatory cardiometabolic stimuli and improved glucose homeostasis in healthy volunteers'. Nutrition, Metabolism and Cardiovascular Diseases.Available Online  
Lindsay, K.L. and Kennelly, M. and Culliton, M. and Smith, T. and Maguire, O.C. and Shanahan, F. and Brennan, L. and McAuliffe, F.M. (2014) 'Probiotics in obese pregnancy do not reduce maternal fasting glucose: A double-blind, placebo-controlled, randomized trial (Probiotics in Pregnancy Study)'. American Journal of Clinical Nutrition, 99 (6):1432-1439. Available Online  
O'Doherty A.M., O'Gorman A., al Naib A., Brennan L., Daly E., Duffy P. and Fair T. (2014) 'Negative energy balance affects imprint stability in oocytes recovered from postpartum dairy cows'. Genomics.Available Online  
Forster H, Fallaize R, Gallagher C, O'Donovan CB, Woolhead C, Walsh MC, Macready AL, Lovegrove JA, Mathers JC, Gibney MJ, Brennan L, Gibney ER (2014) 'Online dietary intake estimation: the Food4Me food frequency questionnaire'. Journal Of Medicine, 16 (6).  
O'Grada CM, Morine MJ, Morris C, Ryan M, Dillon ET, Walsh M, Gibney ER, Brennan L, Gibney MJ, Roche HM (2014) 'PBMCs reflect the immune component of the WAT transcriptome--implications as biomarkers of metabolic health in the postprandial state'. Molecular Nutrition & Food Research, 58 (4):808-820.  
Ferguson JF, Ryan MF, Gibney ER, Brennan L, Roche HM, Reilly MP (2014) 'Dietary isoflavone intake is associated with evoked responses to inflammatory cardiometabolic stimuli and improved glucose homeostasis in healthy volunteers'. Nutrition, metabolism, and cardiovascular diseases : NMCD.  
Nyamundanda, G., Gormley, I.C. and Brennan, L. (2013) 'A dynamic probabilistic principal components model for the analysis of longitudinal metabolomics data'. Journal of the Royal Statistical Society: Series C (Applied Statistics).  
Nyamundanda, G., Gormley, I.C., Fan,Y., Gallagher, W.M. and Brennan, L. (2013) 'MetSizeR: selecting the optimal sample size for metabolomic studies using an analysis based approach'. BMC Bioinformatics.  
Walsh MC, McLoughlin GA, Roche HM, Ferguson JF, Drevon CA, Saris WH, Lovegrove JA, Risérus U, López-Miranda J, Defoort C, Kie?-Wilk B, Brennan L, Gibney MJ (2013) 'Impact of geographical region on urinary metabolomic and plasma fatty acid profiles in subjects with the metabolic syndrome across Europe: the LIPGENE study'. The Journal of nutrition, :1-8.  
Dr John Browne
Vegh, P., Foroushani, A. B., Magee, D. A., McCabe, M. S., Browne, J. A., Nalpas, N. C., Conlon, K. M., Gordon, S. V., Bradley, D. G., Machugh, D. E., Lynn, D. J. (2013) 'Profiling microRNA expression in bovine alveolar macrophages using RNA-seq'. Veterinary Immunology and Immunopathology, 155 (4):238-44.  
Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, Machugh DE, Lynn DJ (2013) 'Profiling microRNA expression in bovine alveolar macrophages using RNA-seq'. VET IMMUNOL IMMUNOP, 155 (4):238-244.  
Dr Nigel Patrick Brunton
Kenny, Owen, Smyth, Thomas J., Hewage, Chandralal M., Brunton, Nigel P. (2014) 'Quantitative UPLC-MS/MS analysis of chlorogenic acid derivatives in antioxidant fractionates from dandelion (Taraxacum officinale) root'. International Journal of Food Science & Technology.Available Online  
O'Callaghan, Yvonne C, O'Brien, Nora M, Kenny, Owen, Harrington, Tom, Brunton, Nigel, Smyth, Thomas J (2014) 'Anti-Inflammatory Effects of Wild Irish Mushroom Extracts in RAW264. 7 Mouse Macrophage Cells'. Journal of medicinal food.  
Ignat, Alexandra, Manzocco, Lara, Brunton, Nigel P., Nicoli, Maria Cristina, Lyng, James G. (2014) 'The effect of pulsed electric field pre-treatments prior to deep-fat frying on quality aspects of potato fries'. Innovative Food Science & Emerging Technologies, (0). Available Online  
Grasso, S., Brunton, N. P., Lyng, J. G., Lalor, F., Monahan, F. J. (2014) Grasso, S., Brunton, N. P., Lyng, J. G., Lalor, F., Monahan, F. J. (2014) 'Healthy processed meat products - regulatory, reformulation and consumer challenges'. Trends in Food Science & Technology,  (0) Available Online  
Valverde, Juan, Reilly, Kim, Villacreces, Salvador, Gaffney, Michael, Grant, James, Brunton, Nigel (2014) 'Variation in bioactive content in broccoli (Brassica oleracea var. italica) grown under conventional and organic production systems'. Journal of the Science of Food and Agriculture.Available Online  
Reilly, Kim, Valverde, Juan, Finn, Leo, Rai, Dilip K., Brunton, Nigel, Sorensen, Jens C., Sorensen, Hilmer, Gaffney, Michael (2014) 'Potential of cultivar and crop management to affect phytochemical content in winter-grown sprouting broccoli (Brassica oleracea L. var. italica)'. Journal of the Science of Food and Agriculture, 94 (2):322-330. Available Online  
Kenny, O., Smyth, T. J., Hewage, C. M., Brunton, N. P., McLoughlin, P. (2014) '4-Hydroxyphenylacetic acid derivatives of inositol from dandelion (Taraxacum officinale) root characterised using LC-SPE-NMR and LC-MS techniques'. Phytochemistry,  98 (0):197-203.  Available Online  
Kenny, Owen, Smyth, Thomas J, Hewage, Chandralal M, Brunton, Nigel P (2014) 'Antioxidant properties and quantitative UPLC-MS/MS analysis of phenolic compounds in dandelion (Taraxacum officinale) root extracts'. Free Radicals and Antioxidants, 4 (1):55-61.  
Kenny, O, Smyth, TJ, Walsh, D, Kelleher, CT, Hewage, CM, Brunton, NP (2014) 'Investigating the potential of under-utilised plants from the Asteraceae family as a source of natural antimicrobial and antioxidant extracts'. Food Chemistry.  
Hossain, Mohammad B., Tiwari, Brijesh K., Gangopadhyay, Nirupama, O'Donnell, Colm P., Brunton, Nigel P., Rai, Dilip K. (2014) 'Ultrasonic extraction of steroidal alkaloids from potato peel waste'. Ultrasonics Sonochemistry, 21 (4):1470-1476. Available Online  
Heffernan, N., Smyth, T. J., Soler-Villa, A., Fitzgerald, R. J., Brunton, N. P. (2014) 'Phenolic content and antioxidant activity of fractions obtained from selected Irish macroalgae species (Laminaria digitata, Fucus serratus, Gracilaria gracilis and Codium fragile)'. Journal of Applied Phycology, :1-12. Available Online  
Heffernan, Natalie, Smyth, Thomas J, FitzGerald, Richard J, Soler-Vila, Anna, Brunton, Nigel (2014) 'Antioxidant activity and phenolic content of pressurised liquid and solid-liquid extracts from four Irish origin macroalgae'. International Journal of Food Science & Technology, 49 (7):1765-1762.  
Aguiló-Aguayo, Ingrid, Downey, Gerard, Keenan, Derek F, Lyng, James G, Brunton, Nigel, Rai, Dilip K (2014) 'Observations on the water distribution and extractable sugar content in carrot slices after pulsed electric field treatment'. Food Research International.  
Aguiló-Aguayo, I., Brunton, N., Rai, D. K., Balagueró, E., Hossain, M. B., Valverde, J. (2014) 'Polyacetylene levels in carrot juice, effect of pH and thermal processing'. Food Chemistry, 152 (0):370-377. Available Online  
Gormley R, Keenan D, Roessle C, Brunton N and Cummins E (2014) 'Managing the Cold Chain for Intermediate and Minimally Processed Fruit Combination Products'. Acta Horticulturae, 1040 :111-118.  
Aguilo-Aguayo, I, Hossain, MB, Brunton, N, Lyng, J, Valverde, J, Rai, DK (2014) 'Pulsed electric fields pre-treatment of carrot purees to enhance their polyacetylene and sugar contents'. Innovative Food Science and Emerging Technologies, 23 :79-86.  
Professor James I Burke
Roth, B., Finnan, J., Jones, M.B., Burke, J.L. and Williams, M.L., (2014) 'Are the benefits of yield responses to nitrogen fertiliser application in the bioenergy crop Miscanthus x giganteus offset by increased soil emissions of nitrous oxide'. Global Change Biology Bioenergy, 3 (March):1-8.  
Mary Moran, Philip Dix, James Burke (2014) 'Microarray analysis of spring barley cultivars displaying differing sensitivity to physiological leaf spot (PLS)'. Irish Journal of Agriculture and Food Research.  
Brendan Roth, Mike Jones, James Burke and Michael Williams, (2013) 'The Effects of land-Use Change from Grassland to Miscanthus x giganteus on Soil Nitrous Oxide Emissions'. Land, 2 :437-451.  
Dr Thomas Cummins
Serrano, MI; Gielen, B; Luyssaert, S; Ciais, P; Vicca, S; Guenet, B; De Vos, B; Cools, N; Ahrens, B; Arain, A; Borken, W; Clarke, N; Clarkson, B; Cummins, T; Don, A; Graf Pannatier, E; Loudon, H; Moore, T; Nieminen, T; Nilsson, MB; Peichl, M; Schwendenmann, L; Siemens, J; Janssens, I (2013) 'Factors controlling the site-to-site variability of dissolved organic carbon concentrations in soil solution'. Global Biogeochemical Cycles.  
Dr Owen Doyle
McGee,F.G, Doyle, O. and Gaffney, M. (2014) 'Assessing the Potential of Commercially Composted Waste Streams for Suppressing Root Rot Diseases in Horticultural Crops'. Acta Horticulturae, 1041 :205-209.  
S. Storey, M.M. Ashaari1, G. McCabe, M. Harty, R. Dempsey1, O. Doyle, N. Clipson and E.M. Doyle (2014) 'Microbial community structure during ?uoranthene degradation in the presence of plants'. Journal of Applied Microbiology.Available Online  
O. Doyle, S. Courtney, R. O'Haire, W.R Carlile and D. Ni Chualain J. Barry and T. Moore (2013) 'The effects of composted seafood waste (CSW) on the growth and development of tomato test plants (Lycopersicon lycopersicum var Shirley) in a reduced fertilized (50%) peat and peat/composted green waste (CGW) (60:40) based media'. Acta Horticulturae, 1013 :375-380.  
O. Doyle, M. Delaney, R. O'Haire, W. R.Carlile and D. Ni Chualain J. Barry and T. Moore (2013) 'The effect of Composted Green Waste (CGW), either as a Surface Application or by Incorporation into a Peat-based Growing Medium, on the Impact of Pythium Suppression on the Germination and Growth of Lettuce (Lactuca sativa cv. Little Gem)'. Acta Horticulturae, 1013 :479-485.  
Professor Alexander Evans
Walsh SW, Mossa F, Butler ST, Berry DP, Scheetz D, Jimenez-Krassel F, Tempelman RJ, Carter F, Lonergan P, Evans AC, Ireland JJ (2014) 'Heritability and impact of environmental effects during pregnancy on antral follicle count in cattle'. Journal of dairy science, 97 (7):4503-4511.  
Scully S, Butler ST, Kelly AK, Evans AC, Lonergan P, Crowe MA (2014) 'Early pregnancy diagnosis on days 18 to 21 postinsemination using high-resolution imaging in lactating dairy cows'. Journal of dairy science, 97 (6):3542-3557.  
Beltman, ME, Mullen, MP, Elia, G, Hilliard, M, Diskin, MG, Evans, ACO, Crowe, MA (2014) 'Global proteomic characterisation of uterine histotroph recovered from beef heifers yielding good quality and degenerate day 7 embryos'. Domestic Animal Endocrinology, 46 :49-57.  
O'Hara L, Forde N, Carter F, Rizos D, Maillo V, Ealy AD, Kelly AK, Rodriguez P, Isaka N, Evans AC, Lonergan P (2014) 'Paradoxical effect of supplementary progesterone between Day 3 and Day 7 on corpus luteum function and conceptus development in cattle'. Reproduction, fertility, and development, 26 (2):328-336.  
Scully S, Evans AC, Duffy P, Crowe MA (2013) 'Characterization of follicle and CL development in beef heifers using high resolution three-dimensional ultrasonography'. Theriogenology.  
Dr Angela Feechan
E Glynn, JM Brennan, E Walsh, A Feechan, KP McDonnell (2014) 'The potential of Miscanthus to harbour known cereal pathogens'. European Journal of Plant Pathology.  
Ayliffe, M., Periyannan, S.K., Feechan A., Dry I., Schumann U.,Lagudah, E., Pryor A. (2014) 'Simple Quantification of In Planta Fungal Biomass'. Methods in Molecular Biology.  
Feechan A, Anderson C, Torregrosa L, Jermakow A, Mestre P, Wiedemann-Merdinoglu S, Merdinoglu D, Walker AR, Cadle-Davidson L, Reisch B, Aubourg S, Bentahar N, Shrestha B, Bouquet A, Adam-Blondon AF, Thomas MR, Dry IB. (2013) 'Genetic dissection of a TIR-NB-LRR locus from the wild North American grapevine species Muscadinia rotundifolia identifies paralogous genes conferring resistance to major fungal and oomycete pathogens in cultivated grapevine'. The Plant Journal.  
Dr Emma Feeney
Feeney, EL O'Brien, SA Scannell, A Markey A Gibney ER (2014) 'Genetic and Environmental influences on liking and reported intakes of vegetables in Irish children'. Food Quality and Preference, 32 :253-263.  
Feeney, EL Hayes, JE (2014) 'Exploring associations between taste perception, oral anatomy and polymorphisms in the carbonic anhydrase (gustin) gene CA6'. Physiology & Behavior, 10 (128):148-154.  
Hayes, JE Feeney, EL Allen, AL (2013) 'Do polymorphisms in chemosensory genes matter for human ingestive behavior?'. Food Quality and Preference, 30 (2):202-216.  
Dr John Fry
González, Ainhoa; Damien Keneghan, John Fry and Tamara Hochstrasser (2013) 'Current practice in biodiversity impact assessment and prospects for developing an integrated process'. Impact Assessment and Project Appraisal,  2013 :1-12.  
González, Ainhoa; Tamara Hochstrasser; John Fry; Paul Scott; Berna Grist and Mike Jones (2013) 'Evaluating Ireland's IBIA as an Approach to Improving the Quality and Effectiveness of Biodiversity Impact Assessment'. Journal of Environmental Management,  131 :150-160.  
Dr Eileen Gibney
Horan MK, McGowan CA, Gibney ER, Donnelly JM, McAuliffe FM (2014) 'Maternal Low Glyceamic Index Diet, fat intake and postprandial glucose influences neonatal adiposity - secondary analysis from the ROLO study'. Nutrition journal.  
Zhao, Y., Monahan, F.J., McNulty, B.A., Gibney, M.J. and Gibney, E.R (2014) 'Effect of vitamin E intake from food and supplement sources on plasma α- and γ-tocopherol levels in a healthy adult Irish population'. British Journal of Nutrition, 112 :1575-1585. Available Online  
Feeney, EL O'Brien, SA Scannell, A Markey A Gibney ER (2014) 'Genetic and Environmental influences on liking and reported intakes of vegetables in Irish children'. Food Quality and Preference, 32 :253-263.  
Forster, H. and Fallaize, R. and Gallagher, C. and O'Donovan, C.B. and Woolhead, C. and Walsh, M.C. and Macready, A.L. and Lovegrove, J.A. and Mathers, J.C. and Gibney, M.J. and Brennan, L. and Gibney, E.R. (2014) 'Online dietary intake estimation: The food4me food frequency questionnaire'. Journal of Medical Internet Research, 16 (6). Available Online  
Wallace, M. and Morris, C. and O'Grada, C.M. and Ryan, M. and Dillon, E.T. and Coleman, E. and Gibney, E.R. and Gibney, M.J. and Roche, H.M. and Brennan, L. (2014) 'Relationship between the lipidome, inflammatory markers and insulin resistance'. Molecular BioSystems, 10 (6):1586-1595. Available Online  
O'Grada, C.M. and Morine, M.J. and Morris, C. and Ryan, M. and Dillon, E.T. and Walsh, M. and Gibney, E.R. and Brennan, L. and Gibney, M.J. and Roche, H.M. (2014) 'PBMCs reflect the immune component of the WAT transcriptome-Implications as biomarkers of metabolic health in the postprandial state'. Molecular Nutrition and Food Research, 58 (4):808-820. Available Online  
Ferguson, J.F. and Ryan, M.F. and Gibney, E.R. and Brennan, L. and Roche, H.M. and Reilly, M.P. (2014) 'Dietary isoflavone intake is associated with evoked responses to inflammatory cardiometabolic stimuli and improved glucose homeostasis in healthy volunteers'. Nutrition, Metabolism and Cardiovascular Diseases.Available Online  
O'Gorman, A. and Morris, C. and Ryan, M. and O'Grada, C.M. and Roche, H.M. and Gibney, E.R. and Gibney, M.J. and Brennan, L. (2014) 'Habitual dietary intake impacts on the lipidomic profile'. Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences, 966 :140-146. Available Online  
O'Brien, O.A. and McCarthy, M. and Gibney, E.R. and McAuliffe, F.M. (2014) 'Technology-supported dietary and lifestyle interventions in healthy pregnant women: A systematic review'. European Journal of Clinical Nutrition, 68 (7):760-766. Available Online  
Lindsay, K.L. and Gibney, E.R. and McNulty, B.A. and McAuliffe, F.M. (2014) 'Pregnant immigrant nigerian women: An exploration of dietary intakes'. Public Health, 128 (7):647-653. Available Online  

Horan, M. and Gibney, E. and Molloy, E. and McAuliffe, F. (2014) 'Methodologies to assess paediatric adiposity'. Irish Journal of Medical Science.Available Online  
Horan, M.K. and McGowan, C.A. and Gibney, E.R. and Donnelly, J.M. and McAuliffe, F.M. (2014) 'Maternal diet and weight at 3 months postpartum following a pregnancy intervention with a low glycaemic index diet: Results from the ROLO randomised control trial'. Nutrients, 6 (7):2946-2955. Available Online  
Fallaize R, Forster H, Macready AL, Walsh MC, Mathers JC, Brennan L, Gibney ER, Gibney MJ, Lovegrove JA (2014) 'Online dietary intake estimation: reproducibility and validity of the Food4Me food frequency questionnaire against a 4-day weighed food record'. Journal Of Medicine, 16 (8).  
O'Brien OA, McCarthy M, Gibney ER, McAuliffe FM (2014) 'Technology-supported dietary and lifestyle interventions in healthy pregnant women: a systematic review'. European Journal of Clinical Nutrition, 68 (7):760-766.  
Lindsay KL, Gibney ER, McNulty BA, McAuliffe FM (2014) 'Pregnant immigrant Nigerian women: an exploration of dietary intakes'. Public Health, 128 (7):647-653.  
Horan M, McGowan C, Donnelly J, Gibney E, McAuliffe F (2014) 'The association of maternal characteristics and macronutrient intake in pregnancy with neonatal body composition'. Archives of Disease in Childhood, 99 Suppl 1.  
Horan M, McGowan C, Donnelly J, Gibney E, McAuliffe F (2014) 'Maternal diet and weight at 3 months partum following a pregnancy intervention with a low glycaemic index diet: Results from the ROLO randomised control trial'. Archives of Disease in Childhood, 99 Suppl 1 :1-30.  
Wallace M, Morris C, O'Grada CM, Ryan M, Dillon ET, Coleman E, Gibney ER, Gibney MJ, Roche HM, Brennan L (2014) 'Relationship between the lipidome, inflammatory markers and insulin resistance'. Molecular BioSystems, 10 (6):1586-1595.  
O'Grada CM, Morine MJ, Morris C, Ryan M, Dillon ET, Walsh M, Gibney ER, Brennan L, Gibney MJ, Roche HM (2014) 'PBMCs reflect the immune component of the WAT transcriptome--implications as biomarkers of metabolic health in the postprandial state'. Molecular Nutrition & Food Research, 58 (4):808-820.  
Johnstone AM, Faber P, Gibney ER, Lobley GE, Stubbs RJ, Siervo M (2014) 'Measurement of body composition changes during weight loss in obese men using multi-frequency bioelectrical impedance analysis and multi-compartment models'. Obesity research & clinical practice, 8 (1):1-54.  
Drummond EM, Harbourne N, Marete E, Jacquier JC, O'Riordan D, Gibney ER (2013) 'An in vivo study examining the antiinflammatory effects of chamomile, meadowsweet, and willow bark in a novel functional beverage'. Journal of dietary supplements, 10 (4):370-380.  
Dr Margherita Gioria
Saunders M, Tobin B, Sweeney C, Gioria M, Benanti G, Cacciotti E, Osborne B (2014) 'Impacts of exceptional and extreme inter-annual climatic events on the net ecosystem carbon dioxide exchange of a Sitka spruce forest'. Agricultural and Forest Meteorology, 184 :147-157.  
Gioria M, Jarosik V, Pysek P (2014) 'Impact of invasive alien plants on the soil seed bank: emerging patterns'. Perspectives in Plant Ecology, Evolution and Systematics, 16 :132-142.  
Dr Olga Grant
Grant, O.M.; Brennan, D.P.; Mellisho Salas, C.D.; Dix, P.J. (2014) 'Impact of enhanced capacity to scavenge reactive oxygen species on cold tolerance of tobacco'. International Journal Of Plant Sciences, 175 (5):544-554.  
Kurz Besson, C; Lobo-do-Vale, R; Rodrigues, ML; Almeida, P; Herd, A; Grant, OM; David, TS; Schmidt, M; Otieno, D; Keenan, TF; Gouveia, C; Mériaux, C; Chaves, MM; Pereira, JS (2014) 'Cork oak physiological responses to manipulation water availability in a Mediterranean woodland'. Agricultural and Forest Meteorology,  184 :230-242.  
Grant, O.M.; Tronina, L.; García-Plazaola, F.I.; Esteban, R.; Santos Pereira, J.; Chaves, M.M. (2014) 'Resilience of a semi-deciduous shrub, Cistus salvifolius, to severe summer drought and heat stress'. Functional Plant Biology  
Costa, M; Grant, OM; Chaves, MM (2013) 'Thermography to explore plant-environment interactions'. Journal of Experimental Botany, 64 :3937-3949.  
Surbanovski, N; Sargent; DJ; Else, MAE; Simpson, DW; Zhang, H; Grant OM (2013) 'Expression of Fragaria vesca PIP aquaporins in response to drought stress: PIP down-regulation correlates with the decline in substrate moisture content'. PLoS ONE, 8 (9).  
Dr Niamh Harbourne
Newman, J., Harbourne, N., O'Riordan, D., Jacquier, J. C., O’Sullivan, M. (2014) 'Comparison of a trained sensory panel and an electronic tongue in the assessment of bitter dairy protein hydrolysates'. Journal of Food Engineering, 128 (0):127-131. Available Online  
Newman, J., Egan, T., Harbourne, N., O'Riordan, D., Jacquier, J. C., O'Sullivan, M. (2014) 'Correlation of sensory bitterness in dairy protein hydrolysates: Comparison of prediction models built using sensory, chromatographic and electronic tongue data'. Talanta, 126 (0):46-53. Available Online  
Dr Emmeline Hill
Orr, N., Hill, E. W., Gu, J., Govindarajan, P., Conroy, J., van Grevenhof, E. M., Ducro, B. J., van Arendonk, J. A., Knaap, J. H., van Weeren, P. R., Machugh, D. E., Ennis, S., Brama, P. A. (2013) 'Genome-wide association study of osteochondrosis in the tarsocrural joint of Dutch Warmblood horses identifies susceptibility loci on chromosomes 3 and 10'. Animal Genetics, 44 (4):408-12.  
Dr Scott Hutchings
J.M. Grigor, C.S. Brennan, S.C. Hutchings and D.S. Rowlands (2014) 'Fibre supplementation negatively affects the sensory acceptance of fibre enriched cereal foods: A meta-analysis'. International Journal of Food Science and Technology.  
Cheong, J. N., Foster, K. D., Morgenstern, M. P., Grigor, J. M. V., Bronlund, J. E., Hutchings, S. C., & Hedderley, D. I. (2014). (2014) 'The application of Temporal Dominance of Sensation (TDS) for oral processing studies: an initial investigation'. Journal of Texture Studies.  
Hutchings, Scott C. Foster, Kylie D. Grigor, John M. V. Morgenstern, Marco P. (2014) 'Investigating changes in sensory stickiness perception with age'. Food Quality and Preference.  
Hutchings, Scott C. Foster, Kylie D. Hedderley, Duncan I. Morgenstern, Marco P. (2014) 'Differences between Age Groups in the Use of the Temporal Dominance of Sensations Technique across a Range of Food Textures'. Journal of Texture Studies.  
Hutchings, Scott C. Foster, Kylie D. Grigor, John M. V. Bronlund, John E. Morgenstern, Marco P. (2014) 'Temporal dominance of sensations: A comparison between younger and older subjects for the perception of food texture'. Food Quality and Preference.  
Dr Jean-Christophe Jacquier
O'Neill, G.J. and Egan, T. and Jacquier, J.C. and O'Sullivan, M. and Dolores O'Riordan, E. (2014) 'Whey microbeads as a matrix for the encapsulation and immobilisation of riboflavin and peptides'. Food Chemistry, 160 :46-52. Available Online  
Drummond EM, Harbourne N, Marete E, Jacquier JC, O'Riordan D, Gibney ER (2013) 'An in vivo study examining the antiinflammatory effects of chamomile, meadowsweet, and willow bark in a novel functional beverage'. Journal of dietary supplements, 10 (4):370-380.  
Dr Alan Kelly
Scully, S, Butler, ST, Kelly, AK, Evans, ACO, Lonergan, P, Crowe, MA (2014) 'Early pregnancy diagnosis on days 18 to 21 postinsemination using high-resolution imaging in lactating dairy cows'. Journal of Dairy Science, 97 (6):3542-3557.  
O'Hara, L, Forde, N, Carter, F, Rizos, D, Maillo, V, Ealy, AD, Kelly, AK, Rodriguez, P, Isaka, N, Evans, ACO (2014) 'Paradoxical effect of supplementary progesterone between Day 3 and Day 7 on corpus luteum function and conceptus development in cattle'. Reproduction, Fertility and Development, 26 (2):328-336.  
Maillo, V., Duffy, P., O'Hara, L., de Frutos, C., Kelly, A. K., Lonergan, P., Rizos, D. (2014) 'Effect of hCG administration during corpus luteum establishment on subsequent corpus luteum development and circulating progesterone concentrations in beef heifers'. Reproduction Fertility and Development, 26 (3):367-374. Available Online  
Carberry, Ciara, Kenny, David, Kelly, Alan, Waters, Sinead (2014) 'Quantitative analysis of ruminal methanogenic microbial populations in beef cattle divergent in phenotypic residual feed intake (RFI) offered contrasting diets'. Journal of Animal Science and Biotechnology, 5 (1). Available Online  
Forde, N., Simintiras, C. A., Sturmey, R., Mamo, S., Kelly, A. K., Spencer, T. E., Bazer, F. W., Lonergan, P. (2014) 'Amino Acids in the Uterine Luminal Fluid Reflects the Temporal Changes in Transporter Expression in the Endometrium and Conceptus during Early Pregnancy in Cattle'. Plos One, 9 (6). Available Online  
O'Hara L, Forde N, Kelly AK, Lonergan P (2014) 'Effect of bovine blastocyst size at embryo transfer on day 7 on conceptus length on day 14: can supplementary progesterone rescue small embryos?'. Theriogenology, 81 (8):1123-1128.  
Carberry CA, Kenny DA, Kelly AK, Waters SM (2014) 'Quantitative analysis of ruminal methanogenic microbial populations in beef cattle divergent in phenotypic residual feed intake (RFI) offered contrasting diets'. Journal of animal science and biotechnology, 5 (1).  
Dr Doris Laepple
Läpple, D. and Hennessy, T. (2014) 'Exploring the Role of Incentives in Agricultural Extension Programs'. Applied Economic Perspectives and Policy.  
 Läpple, D. and Kelley. H. (2014) 'Spatial Dependence in the Adoption of Organic Drystock Farming in Ireland'. European Review of Agricultural Economics.  
Professor James Lyng
Koolman, K., Whyte, P., Meade, J., Lyng, J., Bolton, D. (2014) 'A combination of chemical and ultrasonication treatments to reduce Campylobacter jejuni on raw poultry'. Food and Bioprocess Technology, 46 :299-303.  
Koolman, L., Meade, J., Whyte, P., Lyng, J., Bolton, D. (2014) 'Use of chemical treatments applied alone and in combination to reduce Campylobacter on raw poultry'. Food Control, 46 :299-303.  
Halpin, RM; Duffy, L; Cregenzan-Alberti, O; Lyng, JG; Noci, F. (2014) 'The effect of non-thermal processing technologies on microbial inactivation: An investigation into sub-lethal injury of Escherichia coli and Pseudomonas fluorescens'. Food Control, 41 :106-115.  
Aguilo-Aguayo, I, Hossain, MB, Brunton, N, Lyng, J, Valverde, J, Rai, DK (2014) 'Pulsed electric fields pre-treatment of carrot purees to enhance their polyacetylene and sugar contents'. Innovative Food Science and Emerging Technologies, 23 :79-86.  
Lyng, JG; Arimi, JM; Scully, M; Marra, F (2014) 'The influence of compositional changes in reconstituted potato flakes on thermal and dielectric properties and temperatures following microwave heating'. Journal of Food Engineering, 124 :133-142.  
McDonnell, CK; Allen, P; Morin, C; Lyng, JG (2014) 'The effect of ultrasonic salting on protein and water-protein interactions in meat'. Food Chemistry, 147 :245-251.  
Cregenzán-Alberti, O., Halpin, R.M., Whyte, P., Lyng J.G., Noci, F. (2013) 'Suitability of ccRSM as a tool to predict inactivation and its kinetics for Escherichia coli, Staphylococcus aureus and Pseudomonas fluorescens in homogenized milk treated by manothermosonication'. Food Control,  39 :41-48.  
Professor David MacHugh
Vegh, Peter, Magee, David A., Nalpas, Nicolas C., Bryan, Kenneth, McCabe, Matthew S., Browne, John A., Conlon, Kevin M., Gordon, Stephen V., Bradley, Daniel G., MacHugh, David E., Lynn, David J. (2014) 'MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking'. Tuberculosis.Available Online  
Rue-Albrecht,Kevin, Magee,David A., Killick,Kate E., Nalpas,Nicolas C., Gordon,Stephen V., MacHugh,David E. (2014) 'Comparative functional genomics and the bovine macrophage response to strains of the Mycobacterium genus'. Frontiers in immunology, 5.Available Online  
McLoughlin, K. E., Nalpas, N. C., Rue-Albrecht, K., Browne, J. A., Magee, D. A., Killick, K. E., Park, S. D., Hokamp, K., Meade, K. G., O'Farrelly, C., Gormley, E., Gordon, S. V., MacHugh, D. E. (2014) 'RNA-seq transcriptional profiling of peripheral blood leukocytes from cattle infected with Mycobacterium bovis'. Frontiers in immunology, 5.  
Killick, K. E., Magee, D. A., Park, S. D., Taraktsoglou, M., Browne, J. A., Conlon, K. M., Nalpas, N. C., Gormley, E., Gordon, S. V., MacHugh, D. E., Hokamp, K. (2014) 'Key hub and bottleneck genes differentiate the macrophage response to virulent and attenuated Mycobacterium bovis'. Frontiers in immunology, 5.Available Online  
Heaton, M. P., Leymaster, K. A., Kalbfleisch, T. S., Kijas, J. W., Clarke, S. M., McEwan, J., Maddox, J. F., Basnayake, V., Petrik, D. T., Simpson, B., Smith, T. P., Chitko-McKown, C. G. International Sheep Genomics Consortium. (2014) 'SNPs for parentage testing and traceability in globally diverse breeds of sheep'. PLoS ONE, 9 (4).  
Fariello, M. I., Servin, B., Tosser-Klopp, G., Rupp, R., Moreno, C., San Cristobal, M., Boitard, S. International Sheep Genomics Consortium (2014) 'Selection signatures in worldwide sheep populations'. PLoS ONE, 9 (8).  
Magee, D. A., Spillane, C., Berkowicz, E. W., Sikora, K. M., MacHugh, D. E. (2014) 'Imprinted loci in domestic livestock species as epigenomic targets for artificial selection of complex traits'. Animal Genetics, 45 Suppl 1 :25-39. Available Online  
Magee, David A., MacHugh, David E., Edwards, Ceiridwen J. (2014) 'Interrogation of modern and ancient genomes reveals the complex domestic history of cattle'. Animal Frontiers, 4 (3):7-22. Available Online  
Magee, D. A., Conlon, K. M., Nalpas, N. C., Browne, J. A., Pirson, C., Healy, C., McLoughlin, K. E., Chen, J., Vordermeier, H. M., Gormley, E., MacHugh, D. E., Gordon, S. V. (2014) 'Innate cytokine profiling of bovine alveolar macrophages reveals commonalities and divergence in the response to Mycobacterium bovis and Mycobacterium tuberculosis infection'. Tuberculosis, 94 (4):441-50. Available Online  
Vegh, P., Foroushani, A. B., Magee, D. A., McCabe, M. S., Browne, J. A., Nalpas, N. C., Conlon, K. M., Gordon, S. V., Bradley, D. G., MacHugh, D. E., Lynn, D. J. (2013) 'Profiling microRNA expression in bovine alveolar macrophages using RNA-seq'. Veterinary Immunology and Immunopathology, 155 (4):238-44. Available Online  
Vegh, P., Foroushani, A. B., Magee, D. A., McCabe, M. S., Browne, J. A., Nalpas, N. C., Conlon, K. M., Gordon, S. V., Bradley, D. G., Machugh, D. E., Lynn, D. J. (2013) 'Profiling microRNA expression in bovine alveolar macrophages using RNA-seq'. Veterinary Immunology and Immunopathology, 155 (4):238-44.  
Orr, N., Hill, E. W., Gu, J., Govindarajan, P., Conroy, J., van Grevenhof, E. M., Ducro, B. J., van Arendonk, J. A., Knaap, J. H., van Weeren, P. R., Machugh, D. E., Ennis, S., Brama, P. A. (2013) 'Genome-wide association study of osteochondrosis in the tarsocrural joint of Dutch Warmblood horses identifies susceptibility loci on chromosomes 3 and 10'. Animal Genetics, 44 (4):408-12.  
Killick, K. E., Ni Cheallaigh, C., O'Farrelly, C., Hokamp, K., MacHugh, D. E., Harris, J. (2013) 'Receptor-mediated recognition of mycobacterial pathogens'. Cellular Microbiology, 15 (9):1484-95.  
Dr Kevin McDonnell
Fionnuala Murphy, Ger Devlin, Rory Deverell, Kevin McDonnell (2014) 'Potential to Increase Indigenous Biodiesel Production to help meet 2020 Targets: An EU 2 perspective with a focus on Ireland'. Renewable and Sustainable Energy Reviews, 35 :154-170.  
Glynn, E., Brennan, J.M., Walsh, E., Feechan, A., McDonnell, K.P. (2014) 'The potential of Miscanthus to harbour known cereal pathogens'. European Journal of Plant Pathology.  
Fionnuala Murphy, Ger Devlin, Kevin McDonnell (2014) 'Forest Biomass Supply Chains in Ireland: A Life Cycle Assessment of GHG Emissions and Primary Energy Balances'. Applied Energy, (116):1-8. Available Online  
Fionnuala Murphy, Ger Devlin, Rory Deverell, Kevin McDonnell (2013) 'Biofuel Production in Ireland - An Approach to 2020 Targets with a Focus on Algal Biomass'. Energies, (6):6391-6412. Available Online  
Coultry J,Walsh E, & McDonnell K (2013) 'Energy and economic implications of anaerobic digestion pasteurisation regulations in Ireland'. Energy, 60 :125-128.  
Fionnuala Murphy, Ger Devlin, Kevin McDonnell (2013) 'Energy requirements and environmental impacts associated with the production of short rotation willow (Salix sp.) chip in Ireland'. Global Change Biology Bioenergy.  
Dr Paul McGettigan
Lilianauma Okumu, Niamh Forde, Solomon Mamo, Paul McGettigan, Jai Mehta, James Roche, Pat Lonergan (2014) 'Temporal regulation of fibroblast growth factors and their receptors in the endometrium and conceptus during the pre-implantation period of pregnancy in cattle'. Reproduction, 147 (6):825-834.  
Judith Conroy, Paul A. McGettigan, Dara McCreary, Naisha Shah, Kevin Collins, Bronwyn Parry-Fielder, Margaret Moran, Donncha Hanrahan, Theirry W Deonna, Christian M Korff, David Webb, Sean Ennis, SallyAnn Lynch, Mary D King (2014) 'Towards the identification of a genetic basis for Landau-Kleffner syndrome'. Epilepsia.  
Niamh Forde, Paul A. McGettigan, Jai P. Mehta, Lydia O’Hara, Solomon Mamo, Fuller W. Bazer, Thomas E. Spencer, Pat Lonergan (2014) 'Proteomic analysis of uterine fluid during the pre-implantation period of pregnancy in cattle'. Reproduction, 147 (5):575-587.  
Casey, J; McGettigan, P; Brosnahan, D; Curtis, E; Treacy, E; Ennis, S; Lynch, SA. (2014) 'Atypical Alstrom syndrome with novel ALMS1 mutations precluded by current diagnostic criteria'. European Journal of Medical Genetics, 57 (2-3):55-59. Available Online  
Dr Aideen McKevitt
Kennedy TG, Giotis ES, McKevitt AI (2014) 'Microbial assessment of an upward and downward dehiding technique in a commercial beef processing plant'. Meat Science, 97 (4):486-489.  
Wheatley P, Giotis ES, McKevitt AI (2014) 'Effects of slaughtering operations on carcass contamination in an Irish pork production plant'. Irish Veterinary Journal, 67 (1).  
Dr Barry John McMahon
 McMahon, B.J., Teeling, E. & Hõglund, J. (2014) 'How and why should we implement genomics into conservation?'. Evolutionary Applications,  7 :999-1007.  
Smith, S., Wang, J., Fanning, S. & McMahon, B.J. (2014) 'Antimicrobial resistant bacteria in wild mammals and birds: a coincidence or cause for concern?'. Irish Veterinary Journal, 67.  
Stedt, J., Bonnedahl, J., Hernandez, J., Drobni, M., McMahon, B.J., Hasan, B., Olsen, B. & Waldenström, J. (2014) 'Antibiotic resistance patterns in Escherichia coli from gulls in nine European countries'. Infection Ecology & Epidemiology,  4 :21565-21565 Available Online  
McMahon, B.J., Sheridan, H., Anderson, A., Carnus, T., & Purvis, G. (2013) 'Regional and farm system drivers of avian biodiversity within agriculture ecosystems'. Aspects of Applied Biology, 121 :203-212.  
Dr Breige McNulty
Zhao, Y., Monahan, F.J., McNulty, B.A., Gibney, M.J. and Gibney, E.R (2014) 'Effect of vitamin E intake from food and supplement sources on plasma α- and γ-tocopherol levels in a healthy adult Irish population'. British Journal of Nutrition, 112 :1575-1585. Available Online  
Lindsay, K.L. and Heneghan, C. and McNulty, B. and Brennan, L. and McAuliffe, F.M. (2014) 'Lifestyle and Dietary Habits of an Obese Pregnant Cohort'. Maternal and Child Health Journal.Available Online  
Lindsay, K.L. and Gibney, E.R. and McNulty, B.A. and McAuliffe, F.M. (2014) 'Pregnant immigrant nigerian women: An exploration of dietary intakes'. Public Health, 128 (7):647-653. Available Online  
Breen, C. and Ryan, M. and Mcnulty, B. and Gibney, M.J. and Canavan, R. and O'shea, D. (2014) 'High saturated-fat and low-fibre intake: A comparative analysis of nutrient intake in individuals with and without type 2 diabetes'. Nutrition and Diabetes, 4 (FEBRUARY). Available Online  
Devlin NF, McNulty BA, Turrini A, Tlustos C, Hearty AP, Volatier JL, Kelleher CC, Nugent AP (2014) 'A harmonised approach for identifying core foods for total diet studies'. Food Additives and Contaminants, 31 (8):1336-1346.  
Devlin NF, McNulty BA, Turrini A, Tlustos C, Hearty AP, Volatier JL, Kelleher CC, Nugent AP (2014) 'Identifying core foods for total diet studies: a comparison of four different approaches'. Food Additives and Contaminants, 31 (8):1347-1357.  
Cashman KD, Kinsella M, McNulty BA, Walton J, Gibney MJ, Flynn A, Kiely M (2014) 'Dietary vitamin D2--a potentially underestimated contributor to vitamin D nutritional status of adults?'. The Journal of nutrition, 112 (2):193-202.  
Gibney MJ, McNulty BA, Ryan MF, Walsh MC (2014) 'Nutritional phenotype databases and integrated nutrition: from molecules to populations'. Advances in nutrition (Bethesda, Md.), 5 (3):1-1.  
Walton J, McNulty BA, Nugent AP, Gibney MJ, Flynn A (2014) 'Diet, lifestyle and body weight in Irish children: findings from Irish Universities Nutrition Alliance national surveys'. The Proceedings of the Nutrition Society, 73 (2):190-200.  
E. Casala, C. Matthys, S. Peter, A. Baka, S. Kettler, B. McNulty, A.M. Stephen, J. Verkaik-Kloosterman, J. Wollgast, R. Berry and M. Roe (2014) 'Monitoring and Addressing Trends in Dietary Exposure to Micronutrients through Voluntarily Fortified Foods in the European Union'. Trends in Food Science & Technology.  
Dr Aleksandra Miranda Caso Luengo
Wang X, Coulson GB, Miranda-Casoluengo AA, Miranda-Casoluengo R, Hondalus MK, Meijer WG (2014) 'IcgA (Orf5) is a virulence factor of Rhodococcus equi modulating intracellular growth'. Infection and Immunity, IAI.01670-13.Available Online  
Dr Raul Miranda Caso Luengo
Whittingham, JL; Blagova, EV; Finn, CE; Luo, H; Miranda-CasoLuengo, R; Turkenburg, JP, Leech, AP; Walton, PH; Murzin, AG; Meijer, WG; Wilkinson, AJ (2014) 'Structure of the virulence-associated protein VapD from the intracellular pathogen Rhodococcus equi'. Acta Crystallographica Section D-Biological Crystallography, 70 :2139-2151.  
Wang X, Coulson GB, Miranda-Casoluengo AA, Miranda-Casoluengo R, Hondalus MK, Meijer WG (2014) 'IcgA (Orf5) is a virulence factor of Rhodococcus equi modulating intracellular growth'. Infection and Immunity, IAI.01670-13.Available Online  
Liu, L; Tharmalingam, T; Maischberger, E; Miranda-CasoLuengo, R; Meijer, WG; Rudd, PM; Irwin, JA (2013) 'A HPLC-based glycoanalytical protocol allows the use of natural O-glycans derived from glycoproteins as substrates for glycosidase discovery from microbial culture'. Glycoconjugate journal, 30 (8):791-800.  
Professor Frank Monahan
Contini C, Álvarez, R, O'Sullivan M, Dowling D, Gargan S, and Monahan FJ. (2014) 'Effect of an active packaging with Citrus extract on lipid oxidation and sensory quality of cooked turkey meat'. Meat Science,  96 :1171-1176. Available Online  
Zhao, Y., Monahan, F.J., McNulty, B.A., Gibney, M.J. and Gibney, E.R (2014) 'Effect of vitamin E intake from food and supplement sources on plasma α- and γ-tocopherol levels in a healthy adult Irish population'. British Journal of Nutrition, 112 :1575-1585. Available Online  
Contini, C., Katsikogianni, M.G., O’Neill, F.T., O’Sullivan, M., Dowling, D.P. and Monahan, F.J. (2014) 'Mechanism of action of an antioxidant active packaging prepared with Citrus extract'. LWT -- Food Science and Technology, 59 :1082-1087. Available Online  
Bahar B, Harrison SM, Moloney AP, Monahan FJ and Schmidt O. (2014) 'Isotopic turnover of carbon and nitrogen in bovine blood fractions and inner organs'. Rapid Communications in Mass Spectrometry, 28 :1011-1018. Available Online  
Contini C, Katsikogianni MG, O'Neill FT, O'Sullivan M, Boland F, Dowling DP and Monahan FJ (2014) 'Storage stability of an antioxidant active packaging coated with Citrus extract following a plasma jet pre-treatment'. Food and Bioprocess Technology, 7 :2228-2240. Available Online  
Osorio MT, Downey G, Moloney AP, Röhrle FT, Luciano G, Schmidt O and Monahan FJ (2013) 'Beef authentication using dietary markers: Chemometric selection and modelling of significant beef biomarkers using concatenated data from multiple analytical methods'. Food Chemistry, 141 :2795-2801. Available Online  
Balter V, Lamboux A, Zazzo A, Télouk P, Leverrier Y, Marvel J, Moloney AP, Monahan FJ, Schmidt O, Albarède F (2013) 'Contrasting Cu, Fe, and Zn isotopic patterns in organs and body fluids of mice and sheep, with emphasis on cellular fractionation'. Metallomics,  5 (11):1470-1482 Available Online  
Professor Simon John More
Clegg, T.A., Good, M., More, S.J. (2014) 'Future risk of bovine tuberculosis recurrence among high risk herds in Ireland'. Preventive Veterinary Medicine.  
Richardson, I.W., Bradley, D.G., Higgins, I.M., McClure, J., More, S.J., Berry, D.P. (2014) 'Variance components for susceptibility to Mycobacterium bovis infection in dairy and beef cattle'. Genetics Selection Evolution.  
Cullinane, M., O'Sullivan, E., Collins, D.M., Byrne, A.W., More, S.J. (2014) 'Horse impoundments under Control of Horses legislation in the Munster region of Ireland: factors affecting euthanasia'. Veterinary Record.  
Devitt, C., Kelly, P., Blake, M., Hanlon, A., More, S.J. (2014) 'An investigation into the human element of on-farm animal welfare incidents in Ireland'. Sociologia Ruralis.  
Harley, S., Boyle, L., O'Connell, N.E., More, S.J., Teixeira, D., Hanlon, A. (2014) 'Docking the value of pigmeat? Prevalence and financial implications of welfare lesions in slaughter pigs in the Republic of Ireland'. Animal Welfare, 23 :275-285.  
Cowley, D.J.B., Graham, D.A., Guelbenzu, M., Doherty, M.L., More, S.J. (2014) 'Aspects of bovine herpesvirus 1 and bovine viral diarrhoea virus herd-level seroprevalence and vaccination in dairy and beef herds in Northern Ireland'. Irish Veterinary Journal, 67.  
Canty, M.J., Scanlon, A., Collins, D.M., McGrath, G., Clegg, T.A., Lane, E., Sheridan, M.K., More, S.J. (2014) 'Cadmium and other heavy metal concentrations in bovine kidneys in the Republic of Ireland'. Science of the Total Environment, 485-486 :223-231.  
Aznar, I., Frankena, K., More, S.J., Whelan, C., Martin, W., Gormley, E., Corner, L.A.L., Murphy, D., De Jong, M.C.M. (2014) 'Optimising and evaluating the characteristics of a multiple antigen ELISA for detection of Mycobacterium bovis infection in a badger vaccine trial'. PLoS ONE, 9.  
McGrath, G., Clegg, T.A., More, S.J. (2014) 'Recent spatial changes in bovine tuberculosis in the Republic of Ireland'. Veterinary Record, 175 :45-2.  
Doherty, N., More, S.J., Somers, J. (2014) 'Risk factors for lameness on 10 dairy farms in Ireland'. Veterinary Record, 174 (24).  
Devitt, C., Kelly, P., Blake, M., Hanlon, A., More, S.J. (2014) 'Dilemma experienced by government veterinarians when responding professionally to farm animal incidents in Ireland'. Veterinary Record Open, 1.  
Clegg, T.A., Morrissey, T., Geoghegan, F., Martin, S.W., Lyons, K., Ashe, S., More, S.J. (2014) 'Risk factors associated with increased mortality of farmed Pacific oysters in Ireland during 2011'. Preventive Veterinary Medicine, 113 (2):257-267.  
Gormley, E., Doyle, M., Duignan, A., Good, M., More, S.J., Clegg, T. (2013) 'Identification of risk factors associated with disclosure of false positive bovine tuberculosis reactors using the gamma-interferon (IFNγ) assay'. Veterinary Research, 44.  
Devitt, C., Kelly, P., Blake, M., Hanlon, A., More, S.J. (2013) 'Veterinarian challenges to providing a multi-agency response to farm animal welfare problems in Ireland: responding to the human factor'. Revue Scientifique Et Technique-Office International Des Epizooties, 32 (3):657-668. Available Online  
Jin, R., Good, M., More, S.J., Sweeney, C., McGrath, G., Kelly, G. (2013) 'An association between rainfall and bovine TB in Wicklow, Ireland'. Veterinary Record, 173 (18).  
Graham, D.A., Clegg, T.A., Lynch, M., More, S.J. (2013) 'Herd-level factors associated with the presence of bovine viral diarrhoea virus in herds participating in the voluntary phase of the Irish national eradication programme'. Preventive Veterinary Medicine, 112 (1-2):99-108.  
Gallagher, M.J., Higgins, I.M., Clegg, T.A., Williams, D.H., More, S.J. (2013) 'Comparison of bovine tuberculosis recurrence in Irish herds between 1998 and 2008'. Preventive Veterinary Medicine, 111 (3-4):237-244.  
Aznar, I., More, S.J., Frankena, K., De Jong, M.C.M. (2013) 'Estimating the power of a Mycobacterium bovis vaccine trial in Irish badgers'. Preventive Veterinary Medicine, 111 (3-4):297-303.  
Lane, E.A., Crowe, M.A., Beltman, M.E., More, S.J. (2013) 'The influence of cow and management factors on reproductive performance of Irish seasonal calving dairy cows'. Animal Reproduction Science, 141 (1-2):34-41.  
Dr Barbara Murphy
Gildea S, Quinlivan M, Murphy BA, Cullinane A (2013) 'Humoral response and antiviral cytokine expression following vaccination of thoroughbred weanlings-A blinded comparison of commercially available vaccines'. Vaccine.  
Dr Paul Murphy
Mellander P-E, Melland AR, Murphy PNC, Wall DP, Shortle G & Jordan P (2014) 'Coupling of surface water and groundwater nitrate-N dynamics in two permeable agricultural catchments'. Journal of Agricultural Science, :1-18. Available Online  
Shore M, Jordan P, Mellander P-E, Kelly-Quinn M, Wall DP, Murphy PNC & Melland AR (2014) 'Evaluating the critical source area concept of phosphorus loss from farms to water-bodies in agricultural catchments'. Science of the Total Environment, 490 :405-415. Available Online  
Mihailescu E, Murphy PNC, Ryan W, Casey IA & Humphreys J (2014) 'Nitrogen balance and use efficiency on twenty-one intensive grass-based dairy farms in the South of Ireland'. Journal of Agricultural Science.Available Online  
Shore M, Murphy PNC, Jordan P, Mellander P-E, Kelly-Quinn M, Cushen M, Mechan S, Shine O & Melland AR (2013) 'Evaluation of a surface hydrological connectivity model in agricultural catchments with surface ditch drainage'. Environmental Modelling and Software, 47 :7-15. Available Online  
Dr Aine Ni Dhubhain
Duesberg, Stefanie, Vincent Upton, Deirdre O'Connor, Aine Ni Dhubhain (2014) 'Factors influencing Irish farmers afforestation intention'. Forest Policy and Economics, 39 :13-20.  
Duesberg, Stefanie, Aine Ni Dhubhain, Deirdre O'Connor (2014) 'Assessing policy tools for encouraging farm afforestation in Ireland'. Land Use Policy, 38 :194-203.  
Professor Maarten Nieuwenhuis
Meijer, S.S,. Sileshi, G.W., Catacutan, D. and Nieuwenhuis, M. (2014) 'Farmers and forest conservation in Malawi: The disconnect between attitudes, intentions and behavioui'. Biodiversity and Conservation.  
Meijer, S.S., Catacutan, D., Seleshi, G.W. and Nieuwenhuis, M. (2014) 'Tree planting by smallholder farmesr in Malawi: The relationship between beliefs, attitudes and behaviour'. Environmental Politics.  
Meijer, S.S., Seleshi, G.W., Kundhlande, G., Catacutan, D. and Nieuwenhuis, M. (2014) 'The role of household head, gender and kinship structure in household decision making for agriculture and tree planting in Malawi'. Gender and development.  
Meijer, S., Catacutan, D., Ajayi, O., Sileshi, G. and Nieuwenhuis, M. (2014) 'The role of knowledge, attitudes and perceptions in the uptake of agricultural and agroforestry innovations among smallholder farmers in sub-Saharan Africa'. International Journal of Agricultural Sustainability.Available Online  
Olajuyigbe, S., Tobin, B. and Nieuwenhuis, M. (2014) 'Role of brash in augmenting forest site carbon capital and maintaining site nutrition in a Sitka spruce forest in Ireland'. European Journal Of Forest Research, 133 (3):563-572.  
Gómez-García, E., Crecente-Campo, F., Tobin, B., Hawkins, M., Nieuwenhuis, M. and Diéguez?Aranda, U. (2014) 'A dynamic volume and biomass growth model system for even?aged downy birch stands in south?western Europe'. Forestry,  87 (1):165-176.  
McCullagh, A., Broad, L. and Nieuwenhuis, M. (2013) 'A comparison of two yield forecasting methods used in Ireland'. Irish Forestry, 70 (1&2):7-17.  
Nieuwenhuis, M., Hendrick, E. and Phillips, H. (2013) 'Forestry and a low carbon economy - a background paper'. Irish Forestry, 70 (1&2):18-35.  
Gordon, S., Floris, A., Boerboom, L., Lämås, T., Eriksson, L., Nieuwenhuis, M., Garcia, J. and Rodriguez, L. (2013) 'Studying the use of forest management decision support systems: An initial synthesis of lessons learned from case studies compiled using a semantic wiki'. SCANDINAVIAN JOURNAL OF FOREST RESEARCH.Available Online  
Dr Anne Nugent
Devlin NF, McNulty BA, Turrini A, Tlustos C, Hearty AP, Volatier JL, Kelleher CC, Nugent AP (2014) 'A harmonised approach for identifying core foods for total diet studies'. Food Additives and Contaminants, 31 (8):1336-1346.  
Devlin NF, McNulty BA, Turrini A, Tlustos C, Hearty AP, Volatier JL, Kelleher CC, Nugent AP (2014) 'Identifying core foods for total diet studies: a comparison of four different approaches'. Food Additives and Contaminants, 31 (8):1347-1357.  
Walton J, McNulty BA, Nugent AP, Gibney MJ, Flynn A (2014) 'Diet, lifestyle and body weight in Irish children: findings from Irish Universities Nutrition Alliance national surveys'. The Proceedings of the Nutrition Society, 73 (2):190-200.  
Dr Deirdre O'Connor
Duesberg, S., Upton, V., O’Connor, D., and Ni Dhubháin, Á. (2014) 'Factors Influencing Irish Farmers’ Afforestation Intentions'. Forest Policy and Economics,  39 :13-20.  
Duesberg, S., Ni Dhubháin, Á. and O’Connor, D. (2014) 'Assessing Policy Tools for Encouraging Farm Afforestation in Ireland'. Land Use Policy,  38 :194-203.  
Dr Alan O'Doherty
O'Doherty, A.M. and O'Gorman, A. and al Naib, A. and Brennan, L. and Daly, E. and Duffy, P. and Fair, T. (2014) 'Negative energy balance affects imprint stability in oocytes recovered from postpartum dairy cows'. Genomics.Available Online  
O'Doherty AM and McGettigan PA (2014) 'Epigenetic processes in the male germline'. Reproduction Fertility and Development.Available Online  
O'Doherty A.M., O'Gorman A., al Naib A., Brennan L., Daly E., Duffy P. and Fair T. (2014) 'Negative energy balance affects imprint stability in oocytes recovered from postpartum dairy cows'. Genomics.Available Online  
Shojaei Saadi HA, O'Doherty AM, Gagné D, Fournier E, Grant JR, Sirard MA, Robert C. (2014) 'An integrated platform for bovine DNA methylome analysis suitable for small samples'. BMC Genomics, 15 (1). Available Online  
Professor John O'Doherty
Moroney, NC and O’Grady, MN and Robertson, RC and Stanton, C and O’Doherty, JV and Kerry, JP (2014) 'Influence of level and duration of feeding polysaccharide (laminarin and fucoidan) extracts from brown seaweed ( < i>Laminaria digitata) on quality indices of fresh pork'. Meat Science.  
Mukhopadhya, Anindya and Noronha, Nessa and Bahar, Bojlul and Ryan, Marion T and Murray, Brian A and Kelly, Phil M and O'Loughlin, Ian B and O'Doherty, John V and Sweeney, Torres (2014) 'Anti-inflammatory effects of a casein hydrolysate and its peptide-enriched fractions on TNF$\alpha$-challenged Caco-2 cells and LPS-challenged porcine colonic explants'. Food Science \& Nutrition.  
Vigors, Stafford and Sweeney, Torres and O'Shea, Cormac J and Browne, John A and O'Doherty, John V (2014) 'Improvements in growth performance, bone mineral status and nutrient digestibility in pigs following the dietary inclusion of phytase are accompanied by modifications in intestinal nutrient transporter gene expression'. British Journal of Nutrition, 112 (05):688-697.  
Heim, G and Walsh, AM and Sweeney, T and Doyle, DN and O'Shea, CJ and Ryan, MT and O'Doherty, JV (2014) 'Effect of seaweed-derived laminarin and fucoidan and zinc oxide on gut morphology, nutrient transporters, nutrient digestibility, growth performance and selected microbial populations in weaned pigs'. British Journal of Nutrition, 111 (09):1577-1585.  
O'Shea, CJ and Mc Alpine, PO and Solan, P and Curran, T and Varley, PF and Walsh, AM and Doherty, JVO (2014) 'The effect of protease and xylanase enzymes on growth performance, nutrient digestibility, and manure odour in grower--finisher pigs'. Animal Feed Science and Technology, 189 :88-97.  
O'Shea, CJ and McAlpine, P and Sweeney, T and Varley, PF and O'Doherty, JV (2014) 'Effect of the interaction of seaweed extracts containing laminarin and fucoidan with zinc oxide on the growth performance, digestibility and faecal characteristics of growing piglets'. British Journal of Nutrition, 111 (05):798-807.  
Heim, G and Sweeney, T and O'Shea, CJ and Doyle, DN and O'Doherty, JV (2014) 'Effect of maternal supplementation with seaweed extracts on growth performance and aspects of gastrointestinal health of newly weaned piglets after challenge with enterotoxigenic < i>Escherichia coliK88'. British Journal of Nutrition, doi:10.1017/S0007114514003171 :1-11.  
Professor Dolores O'Riordan
GJ O’Neill, T Egan, JC Jacquier, M O’Sullivan, E Dolores O’Riordan Whey microbeads as a matrix for the encapsulation and immobilisation of riboflavin and peptides. 2014. Food chemistry 160, 46-52 (2014) 'Whey microbeads as a matrix for the encapsulation and immobilisation of riboflavin and peptides'. Food Chemistry, 160 :46-52.  
Newman, J., Egan, T., Harbourne, N., O'Riordan, D., Jacquier, J. C., O'Sullivan, M. (2014) 'Correlation of sensory bitterness in dairy protein hydrolysates: Comparison of prediction models built using sensory, chromatographic and electronic tongue data'. Talanta, 126 (0):46-53. Available Online  
1. Newman, J., Harbourne, N, O'Riordan, D., Jacquier, JC., and O'Sullivan, M (2014) 'Comparison of a trained sensory panel and an electronic tongue in the assessment of bitter dairy protein hydrolysates'. Journal of Food Engineering, 128 :127-131.  
Drummond EM, Harbourne N, Marete E, Martyn D, Jacquier J, O'Riordan D, Gibney ER (2014) 'Inhibition of Proinflammatory Biomarkers in THP1 Macrophages by Polyphenols Derived From Chamomile, Meadowsweet and Willow bark'. Phytotherapy research : PTR, 27 (4):588-594.  
CL Zhou, W Liu, Q Kong, Y Song, YY Ni, QH Li, D O'RiordanIsolation, characterisation and sulphation of soluble polysaccharides isolated from Cucurbita maxima. 2014. International Journal of Food Science & Technology 49 (2), 508-514 (2014) 'O'RiordanIsolation, characterisation and sulphation of soluble polysaccharides isolated from Cucurbita maxima'. International Journal of Food Science and Technology, 49 (2):508-514.  
Egan, T., O’Riordan, E.D., O’Sullivan, M., Jacquier, JC. (2014) Food Chemistry, 156, 197-203. (2014) 'Cold-set whey protein microgels as pH modulated immobilisation matrices for charged bioactives'. Food Chemistry, 156 :197-203.  
Drummond EM, Harbourne N, Marete E, Jacquier JC, O'Riordan D, Gibney ER (2013) 'An in vivo study examining the antiinflammatory effects of chamomile, meadowsweet, and willow bark in a novel functional beverage'. Journal of dietary supplements, 10 (4):370-380.  
Dr Aifric O'Sullivan
Smilowitz JT, O'Sullivan A, Barile D, German JB, Lönnerdal B, Slupsky CM. (2013) 'The human milk metabolome reveals diverse oligosaccharide profiles'. Journal of Nutrition, 143 (11):1709-18.  
Mr Mick O'Sullivan
Contini C, Álvarez, R, O'Sullivan M, Dowling D, Gargan S, and Monahan FJ. (2014) 'Effect of an active packaging with Citrus extract on lipid oxidation and sensory quality of cooked turkey meat'. Meat Science, 96 :1171-1176. Available Online  
O'Neill, G.J. and Egan, T. and Jacquier, J.C. and O'Sullivan, M. and Dolores O'Riordan, E. (2014) 'Whey microbeads as a matrix for the encapsulation and immobilisation of riboflavin and peptides'. Food Chemistry, 160 :46-52. Available Online  
C. Contini, M.G., Katsikogiann, F.T., O’Neill, M., O’Sullivan, D.P., Dowling, & F.J. Monahan (2014) 'Mechanism of action of an antioxidant active packaging prepared with Citrus extract'. LWT -- Food Science and Technology, 59 :1082-1087.  
J. Newman, N.Harbourne, D. O’Riordan, J.C. Jacquier & M. O’Sullivan (2014) 'Comparison of a trained sensory panel and an electronic tongue in the assessment of bitter dairy protein hydrolysates'. J Food Eng, 128 :127-131.  
J. Newman, T. Egan, N. Harbourne, D. O’Riordan, J.C. Jacquier & M. O’Sullivan (2014) 'Correlation of sensory bitterness in dairy protein hydrolysates: comparison of prediction models built using sensory, chromatographic and electronic tongue data'. Talanta, 126 :46-53.  
Contini C, Katsikogianni MG, O'Neill FT, O'Sullivan M, Boland F, Dowling DP and Monahan FJ (2014) 'Storage stability of an antioxidant active packaging coated with Citrus extract following a plasma jet pre-treatment'. Food and Bioprocess Technology, 7 :2228-2240. Available Online  
Dr Karina Pierce
McCarthy, J, McCarthy, B, Horan, B, Pierce, K.M, Galvin, N, Brennan, A and Delaby, L (2014) 'Effect of stocking rate and calving date on dry matter intake, milk production, body weight, and body condition score in spring-calving, grass-fed dairy cows'. Journal of Dairy Science.  
McDonald,R., Pierce. K., Fealy, R. and Horan, B. (2013) 'Characteristics, intentions and expectations of new entrant dairy farmers entering the Irish Dairy industry through New Entrant Scheme'. International Journal of Agricultural Management.  
Ms Aine Regan
Regan, A; McConnon, A; Kuttschreuter, M; Rutsaert, P; Shan, L; Pieniak, Z; Barnett, J, Verbeke, W; Wall, P. (2014) 'The impact of communicating conflicting risk and benefit messages: an experimental study on red meat information'. Food Quality and Preference.  
Regan, A; Shan, L; McConnon, A; Marcu, A; Raats, M; Wall, P; Barnett, J. (2014) 'Strategies for dismissing dietary risks: insights from user-generated comments online'. Health Risk and Society.  
Kuttschreuter, M; Rutasert, P; Hilverda, F; Regan, A; Barnett, J; Verbeke, W. (2014) 'Seeking information about food-related risks: the contribution of social media'. Food Quality and Preference, 37 :10-18.  
Professor Alan Renwick
Lamprinopoulou, C., Renwick, A., Klerkx, L., Hermans, F., Roep, D. (2014) 'Application of an integrated systemic framework for analysing agricultural innovation systems and informing innovation policies: Comparing the Dutch and Scottish agrifood sectors'. Agricultural Systems, 129 :40-54.  
Dr Miriam Ryan
Wallace, M. and Morris, C. and O'Grada, C.M. and Ryan, M. and Dillon, E.T. and Coleman, E. and Gibney, E.R. and Gibney, M.J. and Roche, H.M. and Brennan, L. (2014) 'Relationship between the lipidome, inflammatory markers and insulin resistance'. Molecular BioSystems, 10 (6):1586-1595. Available Online  
O'Grada, C.M. and Morine, M.J. and Morris, C. and Ryan, M. and Dillon, E.T. and Walsh, M. and Gibney, E.R. and Brennan, L. and Gibney, M.J. and Roche, H.M. (2014) 'PBMCs reflect the immune component of the WAT transcriptome-Implications as biomarkers of metabolic health in the postprandial state'. Molecular Nutrition and Food Research, 58 (4):808-820. Available Online  
Ferguson JF, Ryan MF, Gibney ER, Brennan L, Roche HM, Reilly MP (2014) 'Dietary isoflavone intake is associated with evoked responses to inflammatory cardiometabolic stimuli and improved glucose homeostasis in healthy volunteers'. Nutrition, metabolism, and cardiovascular diseases : NMCD.  
Breen C, Ryan M, McNulty B, Gibney MJ, Canavan R, O'Shea D (2014) 'High saturated-fat and low-fibre intake: a comparative analysis of nutrient intake in individuals with and without type 2 diabetes'. Nutrition & diabetes, 4.  
Dr Amalia Scannell
Feeney, EL O'Brien, SA Scannell, A Markey A Gibney ER (2014) 'Genetic and Environmental influences on liking and reported intakes of vegetables in Irish children'. Food Quality and Preference, 32 :253-263.  
Feng, Y.-Z., Elmasry, G., Sun, D.-W., Scannell, A.G.M., Walsh, D., Morcy, N.; (2013) 'Near-infrared hyperspectral imaging and partial least squares regression for rapid and reagentless determination of Enterobacteriaceae on chicken fillets'. Food Chemistry, 138 (2-3):1829-1836.  
Dr Olaf Schmidt
Bahar B, Harrison SM, Moloney AP, Monahan FJ and Schmidt O (2014) 'Isotopic turnover of carbon and nitrogen in bovine blood fractions and inner organs'. Rapid Communications in Mass Spectrometry, 28 (9):1011-1018. Available Online  
Andriuzzi WS, Schmidt O (2014) 'Production of rabbit dung triple-labelled with C, N and S stable isotopes'. Pedobiologia, 57 (3):155-160. Available Online  
Arroyo, J., Keith, A.M., Schmidt, O. and Bolger, T. (2013) 'Mite abundance and richness in an Irish survey of soil biodiversity with comments on some newly recorded species'. Irish Naturalists' Journal, 33 (1):19-27.  
Spurgeon DJ, Keith AM, Schmidt O, Lammertsma DR and Faber JH (2013) 'Land-use and land-management change: Relationships with earthworm and fungi communities and soil structural properties'. BMC Ecology, 13: article no. 46.Available Online  
Osorio MT, Downey G, Moloney AP, Röhrle FT, Luciano G, Schmidt O and Monahan FJ (2013) 'Beef authentication using dietary markers: Chemometric selection and modelling of significant beef biomarkers using concatenated data from multiple analytical methods'. Food Chemistry, 141 :2795-2801. Available Online  
Balter V, Lamboux A, Zazzo A, Télouk P, Leverrier Y, Marvel J, Moloney AP, Monahan FJ, Schmidt O, Albarède F (2013) 'Contrasting Cu, Fe, and Zn isotopic patterns in organs and body fluids of mice and sheep, with emphasis on cellular fractionation'. Metallomics, 5 (11):1470-1482. Available Online  
Andriuzzi WS, Bolger T, Schmidt O (2013) 'The drilosphere concept: Fine-scale incorporation of surface residue-derived N and C around natural Lumbricus terrestris burrows'. Soil Biology and Biochemistry, 64 :136-138. Available Online  
Dr Brian Tobin
Olajuyigbe, S., Tobin, B. and Nieuwenhuis, M. (2014) 'Role of brash in augmenting forest site carbon capital and maintaining site nutrition'. European Journal Of Forest Research.  
 
Gómez-García, E., Crecente-Campo, F., Tobin, B., Hawkins, M., Nieuwenhuis, M. and Diéguez?Aranda, U. (2014) 'A dynamic volume and biomass growth model system for even?aged downy birch stands in south?western Europe'. Forestry,  87 (1):165-176.
 
Saunders, M; Tobin, B; Sweeney, C; Gioria, M; Benanti, G; Cacciotti, E; Osborne, B.A. (2014) 'Impacts of exceptional and extreme inter-annual climatic events on the net ecosystem carbon dioxide exchange of a Sitka spruce forest'. Agricultural and Forest Meteorology, 184 :147-157. Available Online  
Bosela, M., Petrás, R., Sitková, Z., Priwitzer, T., Pajtík, J., Hlavatá, H., Sedmák, R. and Tobin, B. (2014) 'Possible causes of the recent rapid increase in the radial increment of silver fir in the Western Carpathians'. Environmental Pollution,  184 :211-221.  
Gomez Garcia, E., Felipe Crecente-Campo, F., Tobin, B., Hawkins, M., Nieuwenhuis, M. and Die’guez-Aranda, U. (2013) 'A dynamic volume and biomass growth model system for even-aged downy birch stands in south-western Europe'. Forestry, 87 :165-176.  
Dr Michael Wallace
Ashfield, A., Wallace, M. and Crosson, P. (2014) 'Economic comparison of pasture based dairy calf-to-beef production systems under temperate grassland conditions'. International Journal of Agricultural Management, 3 (3):175-186.  
Dr Marianne Walsh
Fallaize R, Forster H, Macready AL, Walsh MC, Mathers JC, Brennan L, Gibney ER, Gibney MJ, Lovegrove JA (2014) 'Online dietary intake estimation: reproducibility and validity of the Food4Me food frequency questionnaire against a 4-day weighed food record'. Journal Of Medicine, 16 (8).  
Forster H, Fallaize R, Gallagher C, O'Donovan CB, Woolhead C, Walsh MC, Macready AL, Lovegrove JA, Mathers JC, Gibney MJ, Brennan L, Gibney ER (2014) 'Online dietary intake estimation: the Food4Me food frequency questionnaire'. Journal Of Medicine, 16 (6).  
Gibney MJ, McNulty BA, Ryan MF, Walsh MC (2014) 'Nutritional phenotype databases and integrated nutrition: from molecules to populations'. Advances in nutrition (Bethesda, Md.), 5 (3):1-1.  
Temple D, Denis R, Walsh MC, Dicker P, Byrne AT (2014) 'Comparison of anthropometric-based equations for estimation of body fat percentage in a normal-weight and overweight female cohort: validation via air-displacement plethysmography'. Public Health, :1-7.  
O'Grada CM, Morine MJ, Morris C, Ryan M, Dillon ET, Walsh M, Gibney ER, Brennan L, Gibney MJ, Roche HM (2014) 'PBMCs reflect the immune component of the WAT transcriptome--implications as biomarkers of metabolic health in the postprandial state'. Molecular Nutrition & Food Research, 58 (4):808-820.  
Walsh MC, McLoughlin GA, Roche HM, Ferguson JF, Drevon CA, Saris WH, Lovegrove JA, Risérus U, López-Miranda J, Defoort C, Kie?-Wilk B, Brennan L, Gibney MJ (2013) 'Impact of geographical region on urinary metabolomic and plasma fatty acid profiles in subjects with the metabolic syndrome across Europe: the LIPGENE study'. The Journal of nutrition, :1-8.  
Dr Pádraig Wims
Wims, P. (2014) 'The Potential of Agribusiness Extranets to Improve Communications with Farmer Clients: A Case Study from Ireland'. International Journal of Electronic Business, 11 (1):24-41.  
Abegaz, D.M. and Wims, P. (2014) 'Extension Agents' Awareness of Climate Change in Ethiopia'. The Journal of Agricultural Education and Extension.  


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Other Journals

Dr Emma Feeney
Feeney, E.L Hayes, JE (2014) 'Regional Differences in suprathreshold intensity for bitter and umami stimuli' Chemosensory Perception.  
Dr Mary Forrest
Forrest, Mary (2014) 'Hooker Rhododendrons - Irish Interest in the 1850's' Moorea The Journal of the Irish Garden Plant Society, 16 :23-25.  
Forrest, Mary (2013) 'Plots and Plotholders in Dublin 1909 - 1950' Dublin Historical Record, LXVI (1&2):3-11.  
Professor James Lyng
Birmpa, A., Vantarakis, A., Paparrodopoulos, S., Whyte, P., Lyng, J. (2014) 'Efficacy of three light technologies for reducing microbial populations in liquids' Biomed Research International, :1-9.  
Professor Simon John More
EFSA Scientific Committee (2014) 'Scientific opinion on the safety assessment of carvone, considering all sources of exposure' EFSA Journal, 12 (7).  
EFSA Panel on Animal Health and Welfare (AHAW) (2014) 'Scientific opinion on electrical requirements for poultry waterbath stunning equipment' EFSA Journal, 12 (7).  
EFSA Panel on Animal Health and Welfare (AHAW) (2014) 'Scientific opinion concerning a multifactorial approach on the use of animal and non-animal-based measures to assess the welfare of pigs' EFSA Journal, 12 (5).  
EFSA Panel on Animal Health and Welfare (AHAW) (2014) 'Statement on a conceptual framework for bovine tuberculosis' EFSA Journal, 12 (5).  
EFSA Panel on Animal Health and Welfare (AHAW) (2014) 'Scientific opinion on African Swine Fever' EFSA Journal, 12 (4).  
EFSA Scientific Committee (2014) 'Scientific opinion on Qualified Presumption of Safety (QPS) approach for botanicals' EFSA Journal, 12 (3).  
EFSA Panel on Animal Health and Welfare (AHAW) (2014) 'Scientific opinion on the use of low atmosphere pressure system (LAPS) for stunning poultry' EFSA Journal, 12 (1).  
EFSA Panel on Animal Health and Welfare (AHAW) (2013) 'Scientific opinion on monitoring procedures at slaughterhouses for pigs' EFSA Journal, 11 (12).  
EFSA Panel on Animal Health and Welfare (AHAW) (2013) 'Scientific opinion on monitoring procedures at slaughterhouses for sheep and goats' EFSA Journal, 11 (12).  
EFSA Panel on Animal Health and Welfare (AHAW) (2013) 'Scientific opinion on monitoring procedures at slaughterhouses for poultry' EFSA Journal, 11 (12).  
EFSA Panel on Animal Health and Welfare (AHAW) (2013) 'Guidance on the assessment criteria for studies evaluating the effectiveness of stunning interventions regarding animal protection at the time of killing' EFSA Journal, 11 (12).  
EFSA Panel on Animal Health and Welfare (AHAW) (2013) 'Scientific opinion on field trials for bovine tuberculosis vaccination' EFSA Journal, 11 (12).  
EFSA Panel on Animal Health and Welfare (AHAW) (2013) 'Scientific opinion on monitoring procedures at slaughterhouses for bovines' EFSA Journal, 11 (12).  
EFSA Panel on Animal Health and Welfare (AHAW), European Centre for Disease Prevention and Control, European Medicines Agency (2013) 'Scientific opinion on the possible risks posed by the influenza A (H3N2v) virus for animal health and its potential spread and implications for animal and human health' EFSA Journal, 11 (10).  
Dr Anne Nugent
(2014) 'Metabolic profiling of human peripheral blood mononuclear cells: influence of vitamin d status and gender' Metabolites, 4 (2):248-259.  


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Conference Publications

Professor Alexander Evans
Mullen,MP, McGettigan,P, Browne,JA, Scully,S, Diskin,MG, Evans,ACO,Crowe, MA (2014) Differential expression of mRNAs in whole blood in pregnant versus non-pregnant dairy cattle 20 days after insemination 47th Annual meeting of Society for the Study of Reproduction,  
Jimenez-Krassel,F, Scheetz,F,Neuder,L M,Ireland,JLH ,Pursley, JR, Smith,GW,Tempelman, RJ,Ferris, TA, Roudebush, WE, Mossa, F, Lonergan,P,Evans,ACO,Ireland,JJ. (2014) Anti-Müllerian Hormone: A Potential Diagnostic Marker to Predict Reproductive Performance and Herd Longevity of Dairy Cows 47th Annual meeting of Society for the Study of Reproduction,  
EJ Williams, H Stoeckmann, L Hobbs, B Adamcszyk, ACO Evans, P Rudd, SD Carrington. (2014) Differential Immunoglobulin G glycosylation in postpartum dairy cows with uterine disease: potential for a predictive test International Cow Fertility Conference, Westport,  
EJ Williams, H Stöckmann, L Hobbs, B Adamczyk, ACO Evans, P Rudd, S Carrington (2013) Differential Immunoglobulin G glycosylation in postpartum dairy cows with uterine disease: potential for a predictive test. European Buiatrics Forum,  
EJ Williams, RA Law, HS Gilmore, CP Ferris, IM Sheldon, MG Diskin, SW Walsh, P Lonergan, MA Crowe, JF Roche, ACO Evans (2013) Uterine infection exacerbates liver dysfunction during the early postpartum period in dairy cows European Buiatrics Forum,  
ACO Evans (2013) Developmental programming in cattle and sheep: offspring phenotypes EPICONCEPT Workshop: Epigenetics for improved food production: from model to practice,  
AE Zielak-Steciwko, JA Browne, PA McGettigan, M Gajewska, T Szulc, ACO Evans (2013) European Society for Domestic Animals Annual Meeting Expression and possible role of hsa-miR-582-5p/bta-miR-582 microRNA in granulosa cells of bovine ovarian follicles,  
LHC Hobbs, S Hogan, M Folan, A Baird, R Miranda-CasoLuengo, WG Meijer, S Carrington, ACO Evans, EJ Williams (2013) Peripartum modulation of the microflora of the bovine reproductive tract European Society for Domestic Animal Reproduction,  
Dr John Fry
Ainhoa González, Riki Therivel, John Fry and Walter Foley (2014) Enhancing the Effectiveness of Irish Practice on SEA Alternatives IAIA14: Impact Assessment for Social and Economic Development - 34th Annual Conference of the International Association for Impact Assessment, Viña del Mar, Chile, 8-11 April 2014,  
Fry, John; Maxwell, Anne; Apere, Sarah; McAweeney, Patrick; McSharry, Luke; González, Ainhoa (2014) Non-Technical Summaries - Due Care and Attention? IAIA14: Impact Assessment for Social and Economic Development - 34th Annual Conference of the International Association for Impact Assessment, Viña del Mar, Chile, 8-11 April 2014  
Dr Niamh Harbourne
Omoarukhe, E; Jauregi, P; Harbourne, N (2014) Healthy Natural Beverages- Benefits & Case Study TRADEIT Entrepreneurial Summer Academy,  
O hAonghusa, B; Wu, H; Harbourne, N; Oruna-Concha, MJ (2014) The effect of maturity on the composition and taste characteristics of coloured bell peppers Annual Food Flavour and Sensory Science Symposium,  
Dr Paul McGettigan
Mullen, MP, McGettigan, P, Browne JA, Scully S, Diskin MG, Evans ACO, Crowe MA. (2014) Differential expression of mRNAs in whole blood in pregnant versus non-pregnant dairy cattle 20 days after insemination 47th Annual Meeting of Society for the Study of Reproduction, Grand Rapids, Michigan, US, 555  
Mullen,MP, McGettigan,P, Browne,JA, Scully,S, Diskin,MG, Evans,ACO,Crowe, MA (2014) Differential expression of mRNAs in whole blood in pregnant versus non-pregnant dairy cattle 20 days after insemination 47th Annual meeting of Society for the Study of Reproduction,  
Dr Barry John McMahon
Burke, B., Clarke, D., Fitzpatrick, A., Carnus, T. & McMahon, BJ. (2013) Breeding Peregrine Falcons of Co. Wicklow Sixth Irish Ornithological Research Conference, 3  
McMahon, B.J., Byrne, E., Sweeney, S.P., Carnus, T., Armatige, D., Sarah O’Loughlin-Irwin, S. & Buckley, K. (2013) Breeding Lapwing Vanellus vanellus in Boora, County Offaly, Ireland: an unintended consequence of effective conservation Sixth Irish Ornithological Research Conference, Cork, 40  
Buckley, K., O'Gorman, C., Carnus, T., Höglund, J., Kavanagh, B. & McMahon, B.J. (2013) The recovery of the wild Grey Partridge Perdix perdix in Ireland Sixth Irish Ornithological Research Conference, 2  
Professor Frank Monahan
Monahan, FJ., Moloney, A.P and Schmidt, O. (2014) Combining stable isotopes and trace element analysis for authentication of food. In: J.J. Sloth and S Husted eds. 5th International IUPAC Symposium for Trace Elements in Food, Copenhagen, Denmark, Available Online  
Monahan FJ, Moloney AP and Schmidt O (2013) Developing a diet authentication system from the composition of meat in ruminants. In: DL Michalk, GD Millar, WB Badgery and KM Broadfoot eds. 22nd International Grassland Congress - Revitalising Grasslands to Sustain our Communities, Sydney, Australia, 629 - 535  
Professor Simon John More
Ricci, A., Romero-Barrios, P., Davies, R., Georgiev, M., Havelaar, A., Lupo, C., More, S., Noerrung, B., Hald., T. (2014) Scientific Opinion on the public health hazards to be covered by inspection of poultry XIVth European Poultry Conference, Stavanger, Norway,  
Byrne, A.W., Kenny, K., Fogarty, U., O'Keeffe, J.J., More, S.J., McGrath, G., Martin, S.W., Dohoo, I.R. (2014) Spatio-temporal trends in tuberculosis prevalence in the European badger (Meles meles) in the Republic of Ireland. In: Mintiens, K., Parkin, T.D.H eds. Annual Conference, Society for Veterinary Epidemiology and Preventive Medicine, Dublin, Ireland, 222 - 233  
Clegg, T.A., Duignan, A., Good, M., More, S.J. (2014) The relative effectiveness of testers during field surveillance for bovine tuberculosis in Ireland. In: Mintiens, K., Parkin, T.D.H eds. Annual Conference, Society for Veterinary Epidemiology and Preventive Medicine, Dublin, Ireland, 234 - 244  
Georgiev, M., More, S.J. (2013) An understanding of epidemiological determinants is at the core of an effective risk assessment of Q fever 7th Annual Meeting of Epizone, Brussels, Belgium,  
More, S.J. (2013) Can we have a fresh look at emerging animal diseases? 7th Annual Meeting of Epizone, Brussels, Belgium,  
Lane, E.A., Crowe, M.A., Coughlan, S., More, S.J. (2013) Key factors affecting fertility in season-calving herds 17th Annual ESDAR Conference, The European Society for Domestic Animal Production, Bologna, Italy,  
Dr Olaf Schmidt
Monahan FJ, Moloney AP and Schmidt O (2013) Developing a diet authentication system from the composition of meat in ruminants. In: DL Michalk, GD Millar, WB Badgery and KM Broadfoot eds. 22nd International Grassland Congress - Revitalising Grasslands to Sustain our Communities, Sydney, Australia, 629 - 535  


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Published Reports

Professor Simon John More
More, S.J., Collins, D.M. (eds) (2014) The Centre for Veterinary Epidemiology and Risk Analysis, The TB Diagnostics and Immunology Research Centre, The Badger Vaccine Project. Biennial Report, 2012-13. University College Dublin and the Department of Agriculture, Food and the Marine, Dublin, Ireland. Available Online  


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Other Publications

Professor James I Burke
James Burke (2014) The Challenge of Ear Blight.Invited Review Articles.  
Dr Mary Forrest
Mary Forrest (2014) Trees in Rathgar.Newsletter.  
Forrest, M. (2013) Trees old and new on the Belfield Campus.Newsletter.  
Professor Maarten Nieuwenhuis
Nieuwenhuis, M. (2013) A Guide to the Valuation of Commercial Plantations - Phillips, H., Little, D., McDonald, T. and Phelan, J.Book Reviews.  


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