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'Fluorescence of Drimys winteri stomata'. Image by Mrs Christiana Evans-Fitz.Gerald.

'Fluorescence of Drimys winteri stomata'. Image by Mrs Christiana Evans-Fitz.Gerald.

UCD Biology & Environmental Science

UCD School of Biology & Environmental Science - Research Publications 2013/14

Below is the list of research publications for the UCD School of Biology & Environmental Science in the academic year 2013/14.




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Books

Professor Jenny McElwain
Willis and McElwain (2013) The Evolution of Plants (2nd edition). Oxford: Oxford University Press. Available Online  


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Book Chapters

Dr Benjamin Charlton
Taylor A. M., Charlton B. D. & Reby D. (2014) 'Vocal production by terrestrial mammals: source, filter and function' In: Suthers R, Fitch W. T., Popper A. & Fay D (eds). Vertebrate Sound Production and Acoustic Communication. New York: Springer.  
Dr Wieland Fricke
Knipfer T and Fricke W (2014) 'Root aquaporins' In: A Morte and A Varma (eds). Root Engineering, Soil Biology 40. Berlin Heidelberg: Springer Verlag.  
Dr Margherita Gioria
Gioria, M (2014) 'Habitats' In: Yee, D (eds). Ecology, Systematics and the Natural History of Predaceous Diving Beetles (Coleoptera: Dytiscidae). New York: Springer Science + Business Media B.V.  
Dr Tamara Hochstrasser
Turnbull, L., T. Hochstrasser, M. Wieczorek, A. Baas, J. Wainwright, S. Scarsoglio, B. Tietjen, F. Jeltsch, and E. N. Mueller (2014) 'Approaches to modelling ecogeomorphic systems' In: E. N. Mueller, J. Wainwright, A. J. Parsons, and L. Turnbull (eds). Patterns of land degradation in drylands. Understanding self-organised ecogeomorphic systems. Dordrecht: Springer, pp.171-209 Available Online  
Hochstrasser, T., J. D. A. Millington, V. P. Papanastasis, A. J. Parsons, P. P. Roggero, R. E. Brazier, J. Estrany, A. Farina, and A. Puttock (2014) 'The study of land degradation in drylands: state of the art' In: E. N. Mueller, J. Wainwright, A. J. Parsons, and L. Turnbull (eds). Patterns of land degradation in drylands. Understanding self-organised ecogeomorphic systems. Dordrecht: Springer, pp.13-54 Available Online  
Professor Christoph Mueller
Huygens, D., M. Trimmer, T. Rütting, C. Müller, C. M. Heppell, K. Lansdown, and P. Boeckx (2013) 'Biogeochemical N cycling in wetland ecosystems: 15N isotope techniques' In: K. R. Reddy, J. P. Megonigal, and R. D. Delaune (eds). Biogeochemistry of wetlands. Wisconsin: Soil Science Society of America.  
Dr Florence Renou-Wilson
Blain, D., Murdiyarso, D., Couwenberg, J., Nagata, O., Renou-Wilson, F., Sirin, A., Strack, M., Tuittila, E. S., and Wilson, D. (2014) 'Rewetted organic soils' In: Hiraishi, T., Krug, T., Tanabe, K., Srivastava, N., Baasansuren, J., Fukuda, M., and Troxler, T. G (eds). 2013 Supplement to the 2006 IPCC Guidelines for National Greenhouse Gas Inventories: Wetlands. Switzerland: Intergovernmental Panel on Climate Change. Available Online  


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Peer Reviewed Journals

Dr Jan-Robert Baars
Joe M. Caffrey, Jan-Robert Baars, Jenny H. Barbour, Pieter Boets, Philip Boon, Keith Davenport, Jaimie T.A. Dick, John Early, Lennart Edsman, Cathal Gallagher, Jackson Gross, Petri Heinimaa, Chris Horrill, StéphanieHudin, Philip E. Hulme, Stephen Hynes, Hugh J. MacIsaac, Paul McLoone, Michael Millane, Toril L. Moen, Niall Moore, Jonathan Newman, Ruairi O’Conchuir, Martin O’Farrell, Colette O’Flynn, Birgit Oidtmann, Trevor Renals, Anthony Ricciardi, Helen Roy, Richard Shaw, Olaf Weyl, Frances Williams and Frances E. Lucy (2014) 'Tackling Invasive Alien Species in Europe: the top 20 issues'. Management of Biological Invasions, 5 (1):1-20.  
Fanning, P., Baars, J-R. (2014) 'Biology of the eucalyptus leaf beetle, Paropsisterna selmani (Chrysomelidae: Paropsini) a new pest of Eucalyptus species (Myrtaceae) in Ireland'. Agricultural and Forest Entomology, 16 :45-53.  
Professor Thomas Bolger
Bolger, T., Arroyo, J., Kenny, J. and Caplice, M. (2014) 'Hierarchical analysis of mite community structures in Irish forests - a study of the relative contribution of location, forest type and microhabitat'. Applied Soil Ecology, 83 :39-43.  
Arroyo, J., O´Gara, N. and Bolger, T. (2014) 'Zygoribatula connexa Berlese, 1904 (Acari, Oribatida): a new Irish record with comments on its biology and the genus status in Ireland'. Irish Naturalists' Journal, 33 (2):134-136.  
Arroyo, J., Keith, A.M., Schmidt, O. and Bolger, T. (2013) 'Mite abundance and richness in an Irish survey of soil biodiversity with comments on some newly recorded species'. Irish Naturalists' Journal, 33 (1):19-27.  
Reidy, B. and Bolger T. (2013) 'Soil carbon stocks in a Sitka spruce chronosequence following afforestation'. Irish Forestry, 70 :200-219.  
Arroyo, J., Kenny, J. and Bolger, T. (2013) 'Variation between mite communities in Irish forest types - Importance of bark and moss cover in canopy'. Pedobiologia, 56 :241-250.  
Andriuzzi WS, Bolger T, Schmidt O (2013) 'The drilosphere concept: Fine-scale incorporation of surface residue-derived N and C around natural Lumbricus terrestris burrows'. Soil Biology and Biochemistry, 64 :136-138. Available Online  
Dr Jens Carlsson
Vartia S, Collins PC, Cross TF, FitzGerald RD, Gauthier DT, McGinnity P, Mirimin L & Carlsson J (2014) 'Multiplexing with three-primer PCR for rapid and economical microsatellite validation'. Hereditas.  
Lynch SA, Morgan E, Carlsson J, Mackenzie C, Wooton E, Rowley A, Malham S & Culloty SC (2014) 'The health status of mussels, Mytilus spp., in Ireland and Wales with the molecular identification of a previously undescribed haplosporidian'. Journal Of Invertebrate Pathology.  
Dr Benjamin Charlton
Charlton B. D. (2014) 'Menstrual cycle phase alters women's sexual preferences for composers of more complex music'. Proceedings of the Royal Society of London, 281 :20140403-20140403.  
Charlton B. D. (2014) 'Discrimination of sex and reproductive state in koalas (Phascolarctos cinereus) using chemical cues in urine'. Animal Behaviour, 91 :119-125.  
Charlton, B. D., Wyman, M. T, Locatelli, Y., Fitch W. T. & Reby, D. (2014) 'Do red deer hinds prefer stags that produce harsh roars in mate choice contexts?'. Journal of Zoology, 293 (1):57-62.  
Charlton B. D. (2014) 'Individuality in the harsh coughs of Southern hairy-nosed wombats (Lasiorhinus latifrons)'. ACTA ACUSTICA UNITED WITH ACUSTICA, 100 (4):719-723.  
Townsend S. W., Charlton, B. D. & Manser, M. B. (2014) 'Acoustic cues to identity and predator context in meerkat barks'. Animal Behaviour, 94 :143-149.  
Wyman, M. T., Locatelli, Y., Charlton, B. D., & Reby, D. (2014) 'Female response to conspecific, heterospecific, and hybrid male mating calls in two hybridizing species of polygynous deer'. Journal of Zoology, 293 (2):92-99.  
Garcia, M., Wyman, M. T, Charlton, B. D., Fitch, W. T. & Reby, D. (2014) 'Response of red deer stags (Cervus elaphus) to playback of harsh versus common roars'. Naturwissenschaften, 101 (10):851-854.  
Baotic, A., Stoeger, A. S., Li, D., C Tang & Charlton, B. D. (2014) 'The vocal repertoire of infant giant pandas (Ailuropoda melanoleuca)'. Bioacoustics, 23 (1):15-28.  
Charlton, B. D., Frey, R., McKinnon, A. J., Fritsch, G., Fitch W. T. & Reby, D. (2013) 'Koalas use a novel vocal organ to produce unusually low-pitched mating calls'. Current Biology, 23 (23):R1035-1036.  
Garcia, M., Charlton, B. D. Wyman, M. T, Fitch, W. T. & Reby, D. (2013) 'Do red deer stags (Cervus elaphus) use roar fundamental frequency (F0) to assess rivals?'. PLoS ONE, 8 (12).  
Dr Tasman Crowe
Johnston, E., Mayer-Pinto, M. and Crowe, T. P. (2014) 'Chemical contaminant effects on marine ecosystem functioning: a review'. Journal of Applied Ecology.  
Lyons, D., Arvanitidis, C., Blight, A., Chatzinikolaou, E., Guy-Haim, T., Kotta, J., Orav-Kotta, H., Queirós, A., Rilov, G., Somerfield, P., Crowe, T.P. (2014) 'Macroalgal blooms alter community structure and primary productivity in marine ecosystems'. Global Change Biology.  
Cusson, M., Crowe, T. P., Araújo, R., Arenas, F., Aspden, R., Bulleri, F., Davoult, D., Dyson, K., Fraschetti, S., Herkül, K., Hubas, C., Stuart Jenkins, S., Kotta, J., Kraufvelin, P., Migné, A., Molis, M., Mulholland, O., Noël, L. M.-L. J., Paterson, D. M., Saunders, J., Paul J. Somerfield, P. J., Sousa-Pinto, I., Spilmont, N., Terlizzi, A., Benedetti-Cecchi, L. (2014) 'Relationships between biodiversity and the stability of marine ecosystems: comparisons at a European scale using meta-analysis'. Journal of Sea Research.  
Kochmann, J. & Crowe, T. P. (2014) 'Effects of native macroalgae and predators on survival, condition and growth of non-indigenous Pacific oysters (Crassostrea gigas)'. Journal of Experimental Marine Biology and Ecology, 451 :122-129.  
Professor Fiona Doohan
Ansari, K.I., Doyle, S.M., Kacprzyk, J., Khan, M.R., Walter, S., Brennan, J.M., Arunachalam, C.S., McCabe, P.F., and F.M. Doohan (2014) 'Light influences how the fungal toxin deoxynivalenol affects plant cell death and defense responses'. Toxins, 6 :679-692.  
Ali, Shahin S and Gunupuru, Lokanadha R and Kumar, GB Sunil and Khan, Mojibur and Scofield, Steve and Nicholson, Paul and Doohan, Fiona M (2014) 'Plant disease resistance is augmented in uzu barley lines modified in the brassinosteroid receptor BRI1'. BMC plant biology, 14 (1).  
Oâ¿¿Driscoll, Aoife and Kildea, Steven and Doohan, Fiona and Spink, John and Mullins, Ewen (2014) 'The wheat-Septoria conflict: a new front opening up?'. Trends in plant science, 19 (9):602-610.  
Rudder, Steven and Doohan, Fiona and Creevey, Christopher J and Wendt, Toni and Mullins, Ewen (2014) 'Genome sequence of Ensifer adhaerens OV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes'. BMC genomics, 15 (1).  
Murphy, Brian R and Doohan, Fiona M and Hodkinson, Trevor R (2014) 'Yield increase induced by the fungal root endophyte Piriformospora indica in barley grown at low temperature is nutrient limited'. Symbiosis, 62 (1):29-39.  
Hazard, Christina and Gosling, Paul and Mitchell, Derek T and Doohan, Fiona M and Bending, Gary D (2014) 'Diversity of fungi associated with hair roots of ericaceous plants is affected by land use'. FEMS microbiology ecology, 87 (3):586-600.  
Ali, Shahin S and Khan, Mojibur and Mullins, Ewen and Doohan, Fiona M (2014) 'Identification of Fusarium oxysporum genes associated with lignocellulose bioconversion competency'. Bioenergy Research, 7 (1):110-119.  
Dr Evelyn Doyle
Storey,S., Ashaari,M.M., McCabe,G., Harty,M., Dempsey,R., Doyle,O., Clipson,N. and Doyle,E.M (2014) 'Microbial community structure during fluoranthene degradation in the presence of plants'. Journal of Applied Microbiology, 117 :74-84.  
Lynch, J.P., O'Kiely, P., Murphy, R., and Doyle, E.M. (2013) (2013) 'Changes in chemical composition and digestibility of three maize stover components digested by white-rot fungi'. Journal Of Animal Physiology And Animal Nutrition.  
Dr Edward Farrell
Edward D Farrell, Niall O'Sullivan, Carlotta Sacchi and Stefano Mariani (2014) 'Multiple paternity in the starry smooth-hound shark Mustelus asterias (Carcharhiniformes: Triakidae)'. Biological Journal of the Linnean Society, 111 :119-125. Available Online  
Dr John Finarelli
Finarelli, JA; Coates, MI (2014) 'Chondrenchelys problematica (Traquair, 1888) redescribed: a Lower Carboniferous, eel-like holocephalan from Scotland'. Earth and Environmental Science Transactions of the Royal Society of Edinburgh, 105 (1):35-59.  
Xu, G-H; Gao, K-Q; Finarelli, JA (2014) 'A revision of the Middle Triassic scanilepiform fish Fukangichthys longidorsalis from Xinjiang, China, with comments on the phylogeny of the Actinopteri'. Journal of Vertebrate Paleontology, 34 (4):747-759.  
Liow, LH; Finarelli, JA (2014) 'A dynamic global equilibrium in carnivoran diversification over 20 million years'. Proceedings of the Royal Society B - Biological Sciences, 281. Available Online  
Finarelli, JA; Goswami, A (2013) 'Potential pitfalls of reconstructing deep time evolutionary history with only extant data, a case study using the Canidae (Mammalia, Carnivora)'. Evolution, 67 (12):3678-3685.  
Badgley, C; Finarelli, JA (2013) 'Diversity dynamics of mammals in relation to tectonic and climatic history: Comparison of three Neogene records from North America'. Paleobiology, 39 (3):373-399.  
Dr Wieland Fricke
Fricke W, Bijanzadeh E, Emam Y & Knipfer T (2014) 'Root hydraulics in salt-stressed wheat'. Functional Plant Biology, 41 :366-378.  
Suku, S, Knipfer T & Fricke W (2014) 'Do root hydraulic properties change during the early vegetative stage of plant development in barley (Hordeum vulgare)?'. Annals of Botany, 113 :385-402.  
Dr Margherita Gioria
Saunders M, Tobin B, Sweeney C, Gioria M, Benanti G, Cacciotti E, Osborne B (2014) 'Impacts of exceptional and extreme inter-annual climatic events on the net ecosystem carbon dioxide exchange of a Sitka spruce forest'. Agricultural and Forest Meteorology, 184 :147-157.  
Gioria M, Jarosik V, Pysek P (2014) 'Impact of invasive alien plants on the soil seed bank: emerging patterns'. Perspectives in Plant Ecology, Evolution and Systematics, 16 :132-142.  
Dr Mariana Godinho Bexiga
Bexiga, MG; Kelly, C; Dawson, KA; Simpson JC (2014) 'RNAi-mediated inhibition of apoptosis fails to prevent cationic nanoparticle-induced cell death in cultured cells'. Nanomedicine (London, England), 9 (11):1651-1664. Available Online  
Wang F, Bexiga MG, Anguissola S, Boya P, Simpson JC, Salvati A, Dawson KA (2013) 'Time resolved study of cell death mechanisms induced by amine-modified polystyrene nanoparticles'. Nanoscale, 5 (2):10868-10876. Available Online  
Bexiga, MG, Simpson JC (2013) 'Human diseases associated with form and function of the Golgi complex'. International journal of molecular sciences, 14 (9):18670-18681. Available Online  
Dr Tamara Hochstrasser
González, A., T. Hochstrasser, J. Fry, P. Scott, B. Grist, and M. Jones (2013) 'Evaluating Ireland's IBIA as an approach to improving the quality and effectiveness of biodiversity impact assessment'. Journal of Environmental Management, 131 :150-160. Available Online  
González, A., D. Keneghan, J. Fry, and T. Hochstrasser (2013) 'Current practice in biodiversity impact assessment and prospects for developing an integrated process'. Impact Assessment and Project Appraisal, published online. Available Online  
Dr Mary Kelly-Quinn
Ryan, D. K. and Kelly-Quinn, M. (2014) 'Effects of riparian canopy cover on salmonid diet and prey'. Journal of Fish Biology, :1-16.  
Purcell, P., Cocchiglia, L. and Kelly-Quinn, M. (2014) 'Construction impacts of road-crossing structures on watercourses in special areas of conservation in Ireland'. International Journal of Environmental Studies, 71 (3):315-330.  
Shore M, Jordan P, Mellander P-E, Kelly-Quinn M, Wall DP, Murphy PNC & Melland AR (2014) 'Evaluating the critical source area concept of phosphorus loss from farms to water-bodies in agricultural catchments'. Science of the Total Environment, 490 :405-415. Available Online  
Hayden, B., Massa-gallucci, A.,Harrod, C., O'grady, M., Caffrey, J. and M. Kelly-Quinn (2014) 'Trophic flexibility by roach Rutilus rutilus in novel habitats facilitates rapid growth and invasion success'. Journal of Fish Biology, DOI: 10.1111/jfb.12351.  
Ryan, D; Yearsley, JM; Kelly-Quinn, M (2013) 'Quantifying the effect of Semi-Natural Riparian Cover on Stream Temperatures: Implications for Salmonid Habitat Management'. Fisheries Management and Ecology, 20 (6):494-507.  
Shore M, Murphy PNC, Jordan P, Mellander P-E, Kelly-Quinn M, Cushen M, Mechan S, Shine O & Melland AR (2013) 'Evaluation of a surface hydrological connectivity model in agricultural catchments with surface ditch drainage'. Environmental Modelling and Software, 47 :7-15. Available Online  
Dr Stefano Mariani
Weckworth BV, Musiani M, DeCesare NJ, McDevitt AD, Hebblewhite M, Mariani S (2013) 'Preferred habitat and effective population size drive landscape genetic patterns in an endangered species'. Proceedings of the Royal Society B - Biological Sciences, 280 :20131756-20131756.  
Dr Paul McCabe
Burbridge, E., Rasmussen, S.K., Bernier, F., Kristensen, B.K., McCabe, P.F., and P. J. Dix (2014) 'Altered activity of peroxidase and oxalate oxidase influences lignification'. The Open Plant Science Journal, 8 :1-8.  
Kacprzyk, J., Devine, A. and P.F. McCabe (2014) 'The root hair assay facilitates the use of genetic and pharmacological tools in order to dissect multiple signalling pathways that lead to programmed cell death'. PLoS ONE, 9.  
Gutiérrez, J., González-Pérez, S., García-García, F., Lorenzo, O., Revuelta, J.L., Daly C.T., McCabe, P.F., J.B. Arellano (2014) 'Programmed cell death activated by Rose Bengal in Arabidopsis thaliana cell suspension cultures requires functional chloroplasts'. Journal of Experimental Botany, 65 :3081-3095.  
Ansari, K.I., Doyle, S.M., Kacprzyk, J., Khan, M.R., Walter, S., Brennan, J.M., Arunachalam, C.S., McCabe, P.F., and F.M. Doohan (2014) 'Light influences how the fungal toxin deoxynivalenol affects plant cell death and defense responses'. Toxins, 6 :679-692.  
Hunt D, Chambers JP, Behpouri A, Kelly SP, Whelan L, Pietrzykowska M, Downey F, McCabe PF, Ng CKY (2014) 'Brachypodium distachyon cell suspension cultures: establishment and utilisation'. Cereal Research Communications, 42 :58-69.  
McCabe, PF (2013) 'Healing and closure following death: death signals from a wounded leaf'. New Phytologist, 200 (3):590-591. Available Online  
Dr Allan McDevitt
McDevitt AD, Carden RF, Coscia I, Frantz AC (2013) 'Are wild boars roaming Ireland once more?'. European Journal of Wildlife Research, 59 :761-764.  
Weckworth BV, Musiani M, DeCesare NJ, McDevitt AD, Hebblewhite M, Mariani S (2013) 'Preferred habitat and effective population size drive landscape genetic patterns in an endangered species'. Proceedings of the Royal Society B - Biological Sciences, 280 :20131756-20131756.  
Professor Jenny McElwain
Williford, Kenneth H, Grice, Kliti, Holman, Alexander, McElwain, Jennifer C (2014) 'An organic record of terrestrial ecosystem collapse and recovery at the Triassic-Jurassic boundary in East Greenland'. Geochimica Et Cosmochimica Acta, 127 :251-263.  
Kürschner, Wolfram M, Mander, Luke, McElwain, Jennifer C (2014) 'A gymnosperm affinity for Ricciisporites tuberculatus Lundblad: implications for vegetation and environmental reconstructions in the Late Triassic'. Palaeobiodiversity and Palaeoenvironments, :1-11.  
Haworth, Matthew, Gallagher, Angela, Sum, Elysia, Hill-Donnelly, Marlene, Steinthorsdottir, Margret, Mcelwain, Jennifer (2014) 'On the reconstruction of plant photosynthetic and stress physiology across the Triassic-Jurassic boundary'. Turkish Journal of Earth Sciences, 23 (3):321-329.  
Elliott-Kingston, C, Haworth, M, McElwain, JC (2014) 'Damage structures in leaf epidermis and cuticle as an indicator of elevated atmospheric sulphur dioxide in early Mesozoic floras'. Review of Palaeobotany and Palynology.  
Dr Anika Mostaert
Barclay, R.S., McElwain, J.C., Duckett, J.G., van Es, M.H., Mostaert, A.S., Pressel, S. and Sageman, B.B. (2013) 'New methods reveal oldest known fossil epiphyllous moss: Bryiidites utahensis gen. et sp. nov. (Bryidae)'. American Journal of Botany, 100 (12):2450-2457.  
Professor Christoph Mueller
Ernfors, M., F. P. Brennan, R. G. Richards, K. L. McGeough, B. S. Griffiths, R. J. Laughlin, C. J. Watson, L. Philippot, J. Grant, J. Minet, E. Moynihan, and C. Müller (2014) 'The nitrification inhibitor dicyandiamide increases mineralization immobilization turnover in slurry amended grassland soil'. Journal of Agricultural Science.  
Müller, C., R. J. Laughlin, O. Spott, and T. Rütting (2014) 'Quantification of N2O emission pathways via a 15N tracing model'. Soil Biology & Biochemistry, 72 :44-54.  
McGeough, K. L., C. Müller, R. J. Laughlin, C. J. Watson, M. Ernfors, E. Cahalan, and K. G. Richards (2014) 'The effect of dicyandiamide addition to cattle slurry on soil gross N transformations at a grassland site in Northern Ireland'. Journal of Agricultural Science.  
Schimmelpfennig, S., C. Müller, L. Grünhage, C. Koch, and C. Kammann (2014) 'Biochar, hydrochar and uncarbonized feedstock application to permanent grassland - effects on greenhouse gas emissions and plant growth'. Agriculture, Ecosystems and Environment.  
Khalil, M. I., M. Richards, B. Osborne, M. Williams, and C. Müller (2013) 'Simulation and validation of greenhouse gas emissions and SOC stock changes in arable land using the ECOSSE model'. Atmospheric Environment, 81 :616-625.  
Wilson, D. Mueller, C. Renou-Wilson, F. (2013) 'Carbon emissions and removals from Irish peatlands: current trends and future mitigation measures'. Irish Geography, DOI: 10.1080/00750778.2013.848542. Available Online  
Dr Carl Khee-Yew Ng
Véret J, Bellini L, Guissani P, Ng CKY, Magnan C, Le Stunff H (2014) 'Roles of sphingolipid metabolism in pancreatic β cell dysfunction induced by lipotoxicity'. Journal of Clinical Medicine, 3 :646-662.  
Hunt, D.,Chambers, J.P., Behpouri, A., Kelly, S.P., Whelan, L., Pietrykowska, M., Downey, F., McCabe, P.F., Ng, C.K.Y. (2014) 'Brachypodium distachyon cell suspension cultures: establishment and utilisation'. Cereal Research Communications, 42 :58-69.  
Islam, M.N., Downey, F. and Ng, C.K.Y. (2013) 'Comprehensive profiling of flavonoids in Scutellaria incana using LC-Q-TOF'. Acta Chromatographica, 25 (3):555-569. Available Online  
Dr Kay Nolan
Shiel, RE; Kennedy LJ; Nolan, CM; Mooney, CT; Callanan, JJ (2014) 'Major histocompatibility complex class II alleles and haplotypes associated with non-suppurative meningoencephalitis in greyhounds'. Tissue antigens.  
Professor Bruce Arthur Osborne
Fennell, M., Gallagher, T., León Vintró, L., Osborne, B. (2014) 'Using soil seed banks to assess temporal patterns of genetic variation in invasive plant populations'. Ecology and Evolution, 4 (9):1648-1658.  
Saunders, M; Tobin, B; Sweeney, C; Gioria, M; Benanti, G; Cacciotti, E; Osborne, B.A. (2014) 'Impacts of exceptional and extreme inter-annual climatic events on the net ecosystem carbon dioxide exchange of a Sitka spruce forest'. Agricultural and Forest Meteorology, 184 :147-157. Available Online  
Benanti, G., Saunders, M., Tobin, B. and Osborne, B. A. (2014) 'Contrasting effects of afforestation on nitrous oxide and methane emissions'. Agricultural and Forest Meteorology, 198 :82-93.  
Abdalla, M; Hastings, A; Helmy, M; Prescher, A; Osborne, B; Lanigan, G; Forristal, D; Killi, D; Maratha, P; Williams, M; Rueangritsarakul, K; Smith, P; Nolan, P; Jones, MB (2014) 'Assessing the combined use of reduced tillage and cover crops for mitigating greenhouse gas emissions from arable ecosystems'. Geoderma, 223-225 :9-20.  
Dr Florence Renou-Wilson
Florence Renou-Wilson, C. Barry, C. Mueller and D. Wilson (2014) 'The impacts of drainage, nutrient status and management practice on the full carbon balance of grasslands on organic soils in a maritime temperate zone'. Biogeosciences, 11 (11):4361-4379. Available Online  
Wilson, D. Mueller, C. Renou-Wilson, F. (2013) 'Carbon emissions and removals from Irish peatlands: current trends and future mitigation measures'. Irish Geography, DOI: 10.1080/00750778.2013.848542. Available Online  
Professor Jeremy Simpson
Bexiga MG, Kelly C, Dawson KA, Simpson JC (2014) 'RNA interference-mediated inhibition of apoptosis fails to prevent cationic nanoparticle-induced cell death in cultured cells'. Nanomedicine, 9 (11):1651-1664.  
Farrell J, Kelly C, Rauch J, Kida K, García-Muñoz A, Monsefi N, Turriziani B, Doherty C, Mehta JP, Matallanas D, Simpson JC, Kolch W, von Kriegsheim A (2014) 'HGF induces epithelial-to-mesenchymal transition by modulating the mammalian hippo/MST2 and ISG15 pathways'. Journal of Proteome Research, 13 (6):2874-2886.  
Higa A, Taouji S, Lhomond S, Jensen D, Fernandez-Zapico ME, Simpson JC, Pasquet JM, Schekman R, Chevet E (2014) 'Endoplasmic reticulum stress-activated transcription factor ATF6α requires the disulfide isomerase PDIA5 to modulate chemoresistance'. Molecular Cell Biology, 34 (10):1839-1849.  
Sauvageau E, Rochdi MD, Oueslati M, Hamdan FF, Percherancier Y, Simpson JC, Pepperkok R, Bouvier M (2014) 'CNIH4 interacts with newly synthesized GPCR and control their export from the endoplasmic reticulum'. Traffic, 15 :383-400.  
Michel G, Matthes HWD, Hachet-Haas M, El Baghdadi K, de May J, Pepperkok R, Simpson JC, Galzi J-L, Lecat S (2014) 'Plasma membrane translocation of REDD1 governed by GPCRs contributes to mTORC1 activation'. Journal of Cell Science, 127 :773-787.  
Galea G, Simpson JC (2013) 'High-content screening and analysis of the Golgi complex'. Methods in Cell Biology, 118 :281-295.  
Wang F, Bexiga MG, Anguissola S, Boya P, Simpson JC, Salvati A, Dawson KA (2013) 'Time resolved study of cell death mechanisms induced by amine-modified polystyrene nanoparticles'. Nanoscale, 5 :10868-10876.  
Bexiga MG, Simpson JC (2013) 'Human diseases associated with form and function of the Golgi complex'. International journal of molecular sciences, 14 (9):18670-18681.  
Dr Anthony Staines
Hanly P, Céilleachair AO, Skally M, O'Leary E, Kapur K, Fitzpatrick P, Staines A, Sharp L (2013) 'How much does it cost to care for survivors of colorectal cancer? Caregiver's time, travel and out-of-pocket costs'. Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer, 21 (9):2583-2592.  
Professor Emma C Teeling
Puechmaille, S.J. and Borissov, I.M. and Zsebok, S. and Allegrini, B. and Hizem, M. and Kuenzel, S. and Schuchmann, M. and Teeling, E.C. and Siemers, B.M. (2014) 'Female mate choice can drive the evolution of high frequency echolocation in bats: A case study with Rhinolophus mehelyi'. PLoS ONE, 9 (7). Available Online  
Hughes, G.M. and Teeling, E.C. and Higgins, D.G. (2014) 'Loss of olfactory receptor function in hominin evolution'. PLoS ONE, 9 (1). Available Online  
Hayden, S. and Bekaert, M. and Goodbla, A. and Murphy, W.J. and Dávalos, L.M. and Teeling, E.C. (2014) 'A cluster of olfactory receptor genes linked to frugivory in bats'. Molecular Biology and Evolution, 31 (4):917-927. Available Online  
Puechmaille, S.J. and Teeling, E.C. (2014) 'Non-invasive genetics can help find rare species: A case study with Rhinolophus mehelyi and R. euryale (Rhinolophidae: Chiroptera) in Western Europe'. Mammalia, 78 (2):251-255. Available Online  
McMahon, B.J., Teeling, E.C. & Höglund, J. (2014) 'How and why should we implement genomics into conservation?'. Evolutionary Applications, 7 :999-1007.  
Claire C Morgan, Ann M Mc Cartney, Mark TA Donoghue, Noeleen B Loughran, Charles Spillane, Emma C Teeling and Mary J O¿Connell (2013) 'Molecular adaptation of telomere associated genes in mammals'. BMC Evolutionary Biology, 13.  
S. Mahony, E.C. Teeling,S.D. Biju (2013) 'Three new species of horned frogs, Megophrys (Amphibia: Megophryidae), from northeast India, with a resolution to the identity of Megophrys boettgeri populations reported from the region'. Zootaxa.  
Dr Brian Tobin
Olajuyigbe, S., Tobin, B. and Nieuwenhuis, M. (2014) 'Role of brash in augmenting forest site carbon capital and maintaining site nutrition'. European Journal Of Forest Research.  
Saunders, M; Tobin, B; Sweeney, C; Gioria, M; Benanti, G; Cacciotti, E; Osborne, B.A. (2014) 'Impacts of exceptional and extreme inter-annual climatic events on the net ecosystem carbon dioxide exchange of a Sitka spruce forest'. Agricultural and Forest Meteorology, 184 :147-157. Available Online  
Bosela, M., Petrás, R., Sitková, Z., Priwitzer, T., Pajtík, J., Hlavatá, H., Sedmák, R. and Tobin, B. (2014) 'Possible causes of the recent rapid increase in the radial increment of silver fir in the Western Carpathians'. Environmental Pollution, 184 :211-221.  
Gómez-García, E., Crecente-Campo, F., Tobin, B., Hawkins, M., Nieuwenhuis, M. and Diéguez?Aranda, U. (2014) 'A dynamic volume and biomass growth model system for even?aged downy birch stands in south?western Europe'. Forestry, 87 (1):165-176.  
Gomez Garcia, E., Felipe Crecente-Campo, F., Tobin, B., Hawkins, M., Nieuwenhuis, M. and Die´guez-Aranda, U. (2013) 'A dynamic volume and biomass growth model system for even-aged downy birch stands in south-western Europe'. Forestry, 87 :165-176.  
Dr Jonathan Yearsley
McDevitt, AD; Montgomery, WI; Tosh, DG; Lusby, J; Reid, N; White, TA; McDevitt, CD;O’Halloran, J;Searle, JB;Yearsley JM (2014) 'Invading and Expanding: Range Dynamics and Ecological Consequences of the Greater White-Toothed Shrew (Crocidura russula) Invasion in Ireland'. PLoS ONE, 9 (6).  
Hudspith, V A; Belcher, C M;Yearsley, J M (2014) 'Charring temperatures are driven by the fuel types burned in a peatland wildfire'. Frontiers in Plant Science. Available Online  
Ryan, D; Yearsley, JM; Kelly-Quinn, M (2013) 'Quantifying the effect of Semi-Natural Riparian Cover on Stream Temperatures: Implications for Salmonid Habitat Management'. Fisheries Management and Ecology, 20 (6):494-507.  
Kochmann, J; O'Beirn, F; Yearsley, JM; Crowe, TP; (2013) 'Environmental factors associated with invasion: modelling occurrence data from a coordinated sampling programme for Pacific oysters'. Biological Invasions, 15 (10):2265-2279.  


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Other Journals

Dr Tamara Hochstrasser
Brockman, H. and T. Hochstrasser (2013) 'Complexity should not be construed as confusion' Ethics, Policy & Environment, 16 (3):267-269. Available Online  


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Conference Publications

Dr Tom Wilkinson
Wang, D. and Wilkinson, T. (2014) Proteomic studies on the salivary glands of the brown rice planthopper The 20th Chinese Life Scientists in the UK Annual Meeting,  


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Other Publications

Professor Christoph Mueller
IPCC (2013) IPCC guidelines for national greenhouse gas inventories: wetlands. IPCC Task Force on National Greenhouse Gas Inventories, Switzerland.  
Dr Florence Renou-Wilson
Inter-governmental Panel on Climate Change (2014) IPCC guidelines for national greenhouse gas inventories: wetlands. IPCC Task Force on National Greenhouse Gas Inventories, Switzerland.  


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