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'Staphylococcus epidermidis artificial hip infection'. Image by Mr John Cotter.

'Staphylococcus epidermidis artificial hip infection'. Image by Mr John Cotter.

UCD School of Chemical and Bioprocess Engineering

UCD School of Chemical and Bioprocess Engineering - Research Publications 2014/15

Below is the list of research publications for the UCD School of Chemical and Bioprocess Engineering in the academic year 2014/15.




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Book Chapters

Professor Mohamed Al-Rubeai
Shirsat, N., English, N., Glennon B., and Al-Rubeai M. (2015) 'Modelling of mammalian cell cultures. In: Al-Rubeai M. (ed.), 'Animal Cell Culture'' In: Al-Rubeai M (eds). Animal Cell Culture. Dordrecht: Springer.  
Professor Eoin Casey
Syron, E, Casey, E (2014) 'Membrane bioreactors for wastewater treatment' In: Anil Kumar Pabby, Ana Maria Sastre, and Syed S.H. Rizvi (eds) (eds). Handbook of Membrane Separations: Chemical, Pharmaceutical, and Biotechnological Applications, second edition. USA: CRC Press.  
Professor Denis Dowling
Law, V.J.; Dowling, D.P. (2015) 'Steganalysis of a pulsed plasma jet ICCD camera image using LabVIEW' In: I.J. Rudas (eds). Mathematics and computers in sciences and industry. Montclair, NJ, United States: INASE Publications. , pp.15-20 Available Online  
Abourayana, H.; Dowling D.P. (2015) 'Use of plasmas for tailoring the surface properties of polymers' In: - (eds). Surface Energy and Wetting. -: Intech-Open Access Publisher.  
Dr Niall English
Shirsat, N., English, N., Glennon B., and Al-Rubeai M. (2015) 'Modelling of mammalian cell cultures. In: Al-Rubeai M. (ed.), 'Animal Cell Culture'' In: Al-Rubeai M (eds). Animal Cell Culture. Dordrecht: Springer.  
Professor Brian Glennon
Shirsat, N., English, N., Glennon B., and Al-Rubeai M. (2015) 'Modelling of mammalian cell cultures. In: Al-Rubeai M. (ed.), 'Animal Cell Culture'' In: Al-Rubeai M (eds). Animal Cell Culture. Dordrecht: Springer.  
Dr Susan McDonnell
McDonnell Susan (2015) 'Production of Antibodies in Hybridoma and Non-hybridoma Cell Lines' In: Mohamed Al-Rubeai (eds). Animal Cell Culture: Cell Engineering 9. Springer International Publishing Switzerland: Springer. , pp.65-88  


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Peer Reviewed Journals

Professor Mohamed Al-Rubeai
Shirsat N., Avesh M., Whelan J., English N., Glennon B., Al-Rubeai M. (2015) 'Revisiting Verhulst and Monod models: analysis of batch and fed-batch culture'. Cytotechnology, 67 (3):515-530.  
Dr Owen Byrne
S. Sheehan, P.K. Surolia, O. Byrne, S. Garner, P. Cimo, X. Li,D.P. Dowling, K.R. Thampi (2015) 'Flexible glass substrate based dye sensitized solar cells'. Solar Energy Materials and Solar Cells . Available Online  
Professor Eoin Casey
Davis R, Duane G, Kenny ST, Cerrone F, Guzik MW, Babu RP, Casey E, O'connor, KE (2015) 'High cell density cultivation of Pseudomonas putida KT2440 using glucose without the need for oxygen enriched air supply'. Biotechnology and Bioengineering, 112 :725-733. Available Online  
Syron, E, Semmens, MJ, Casey, E (2015) 'Performance analysis of a pilot-scale membrane aerated biofilm reactor for the treatment of landfill leachate'. Chemical Engineering Journal, 273 :120-129. Available Online  
Quinn, L; Dempsey, R; Casey E; Kane , A; Murphy, C (2015) 'Production of drug metabolites by immobilised Cunninghamella elegans: from screening to scale-up'. Journal of Industrial Microbiology, 42 :799-806.  
Allen, A, Semio, AJC, Habimana, O, Heffernan, R, Safari, A, Casey, A. (2015) 'Nanofiltration and Reverse osmosis surface topographical heterogeneities: do they matter for initial bacterial adhesion?'. Journal of Membrane Science, 486 :10-20. Available Online  
Cao, H., Habimana, O, Semio, A.J.C., Allen, A, Heffernan, R, Casey, E (2015) 'Understanding particle deposition kinetics on NF membranes: a focus on micro-beads & membrane interactions at different environmental conditions'. Journal of Membrane Science, 475 :367-375.  
Gazzola, G; Habimana, O; Murphy, C; Casey. E (2015) 'Comparison of biomass detachment from two different Pseudomonas spp. biofilms under constant shear conditions'. Biofouling, 31 (1):13-18.  
Heffernan, R., Habimana, O., Semio, A.J.C., Cao, H., Safari, A., Casey, E (2014) 'A physical impact of organic fouling layers on bacterial adhesion during nanofiltration'. Water Research, 67 :118-128. Available Online  
Professor Denis Dowling
Sheehan, S.; Surolia, P.K.; Byrne, O.; Garner, S.; Cimo, P.; Li, X.; Dowling, D.P.; Thampi, K.R. (2015) 'Flexible glass substrate based dye sensitized solar cells'. Solar Energy Materials and Solar Cells, 132 :237-244. Available Online  
Iqbal, M.M.; Stallard, C.P.; Dowling D.P.; Turner M.M. (2015) 'Three dimensional coupled fluid-droplet model for atmospheric pressure plasmas'. PLASMA PROCESSES AND POLYMERS, 12 (3):201-213.  
Shehaan, S.; Naponiello, G.; Odobel, F.; Dowling, D.P.; Di Carlo, A.; Dini, D. (2015) 'Comparison of the photoelectrochemical properties of RDS NiO thin films for p-type DSCs with different organic and organometallic dye-sensitizers and evidence of a direct correlation between cell efficiency and charge recombination'. Journal of Solid State Electrochemistry, 19 (4):975-986.  
Novelli, V.; Awais, M.; Dowling, D.P.; Dini D. (2015) 'Electrochemical characterization of rapid discharge sintering (RDS) NiO cathodes for dye-sensitized solar cells of p-type'. American Journal of Analytical Chemistry, 6 (2):176-187.  
Sharkey, M.A.; Chebbi, A; McDonnell, K.A.; Staunton, C.; Dowling, D.P. (2015) 'Evaluation of the sensitivity of bacterial and yeast cells to cold atmospheric plasma jet treatments'. Biointerphases, 10 (029507).  
Iqbal, M.M.; Stallard, C.P.; Dowling D.P.; Turner, Miles M. (2015) 'Two-dimensional integrated model for interaction of liquid droplets with atmospheric pressure plasma'. PLASMA PROCESSES AND POLYMERS, 1612 (8869).  
Dowling D.P.; Stallard C.P. (2015) 'REVIEW - Achieving enhanced material finishing using cold plasma treatments'. Transactions of the Institute of Metal Finishing, 93 (3):119-125.  
Awais, M.; Dowling, D.; Decker, F.; Dini D. (2015) 'Electrochemical characterization of nanoporous nickel oxide thin films spray-deposited onto indium-doped tin oxide for solar conversion scopes'. Advances in Condensed Matter Physics, 186375 .  
Damm, S.; Fedele, S.;Murphy, A.; Holsgrove, K.; Arredondo, M.; Pollard, R.; Barry, J.N.; Dowling, D.P.; Rice, J.H. (2015) 'Plasmon enhanced fluorescence studies from aligned gold nanorod arrays modified with SiO2 spacer layers'. Applied Physics Letters, 106 (183109). Available Online  
C. Contini, F. T. O'Neill, M. O'Sullivan, D. P. Dowling and F. J. Monahan (2014) 'Mechanism of action of an antioxidant active packaging prepared with citrus extract'. Food Science and Technology - Elsevier, 59 (2):1082-1087.  
V. J. Law, J. Mohan, F. T. O'Neill, A. Ivankovic and D. P. Dowling (2014) 'Air based atmospheric pressure plasma jet removal of FreKote 710-NC prior to composite-to-composite adhesive bonding'. International Journal of Adhesion and Adhesives, 54 :72-81.  
K. A. McDonnell, D. P. Dowling (2014) 'Process control of particle deposition systems using acoustic and electrical response signals'. Advanced Powder Technology, 25 (5):1560-1570.  
Dr Niall English
N.J. English (2015) 'Structural Properties of Liquid Water and Ice Ih from Ab Initio Molecular Dynamics with a Non-local Correlation Functional'. Energies, 8 (9):9383-9391.  
N.J. English and C.J. Waldron (2015) 'Perspectives on External Electric Fields in Molecular Simulation: Progress, Prospects and Challenges'. Physical chemistry chemical physics : PCCP .  
M. Lauricella, S. Meloni, S. Liang, N.J. English, P.G. Kusalik and G. Ciccotti (2015) 'Clathrate structure-type recognition: application to hydrate nucleation and crystallisation'. Chemical Physics, 142 (24).  
N. Shirsat, A. Mohd, J. Whelan, N.J. English, B. Glennon and M. Al-Rubeai (2015) 'Revisiting Verhulst and Monod models: Analysis of batch and fed-batch cultures'. Cytotechnology .  
M. Avena, P. Marracino, M. Liberti, F. Apollonio and N.J. English (2015) 'Influence of nanosecond-pulsed electric fields on water and its subsequent relaxation: dipolar effects and debunking memory'. Chemical Physics .  
N.J. English (2015) 'Electric field-controlled semiconductor nanorod assembly in solution: mechanistic insights from non-equilibrium molecular dynamics'. Canadian Journal of Chemistry .  
N.J. English and J.M.D. MacElroy (2015) 'Perspectives on Molecular Simulation of Clathrate Hydrates: Progress, Prospects and Challenges'. Chemical Engineering Science .  
M.M. El-Hendawy, T.A. Fayed, M.K. Awad, N.J. English, S.E.H. Etaiw and A.B. Zaki (2015) 'Photophysics, Photochemistry and Thermal Stability of Diarylethene-Containing Benzothiazolium Species'. Journal of Photochemistry and Photobiology A-Chemistry .  
D. OLoughlin and N.J. English (2015) 'Prediction of Henrys Law Constants via Group-Specific Quantitative Structure Property Relationships'. Chemosphere .  
N.J. English (2014) 'Massively-parallel molecular dynamics simulation of ice growth and decomposition: the rles of system size, ensemble and electrostatics'. Chemical Physics .  
N.J. English and J.S. Tse (2014) 'Thermal conductivity of supercooled water: an equilibrium molecular-dynamics exploration'. Journal Of Physical Chemistry Letters .  
M. Lauricella, S. Meloni, N.J. English, B. Peters and G. Ciccotti (2014) 'Methane Clathrate Hydrate Nucleation Mechanism by Advanced Molecular Simulations'. Journal of Physical Chemistry C .  
N.J. English and J.S. Tse (2014) 'Reversible Pressure - Induced Crystal - Amorphous Structural Transformation in Ice Ih'. Chemical Physics Letters .  
S. Bandaru, N.J. English and J.M.D. MacElroy (2014) 'Theoretical studies on separation of cis  trans isomers using dinuclear metal (Cu+2 and Zn+2) cryptates'. Journal of Molecular Modeling .  
Dr Steven Ferguson
TTC Lai, J Cornevin, S Ferguson, N Li, BL Trout, AS Myerson (2015) 'Control of Polymorphism in Continuous Crystallization via MSMPR Cascade Design'. Crystal Growth and Design, 15 (7):3374-3382.  
S Ferguson, G Morris, H Hao, M Barrett, B Glennon (2014) 'Automated self seeding of batch crystallizations via plug flow seed generation'. Chemical Engineering Research and Design, 92 (11):2534-2541.  
M OMahony, AK Leung, S Ferguson, BL Trout, AS Myerson (2014) 'A Process for the Formation of Nanocrystals of Active Pharmaceutical Ingredients with Poor Aqueous Solubility in a Nanoporous Substrate'. Organic Process Research and Development, 19 (9):1109-1118.  
Professor Brian Glennon
Y. Gao, J.K. Wang, Y.L. Wang, Q.X. Yin, B. Glennon, J. Zhong, J.B. Ouyang, X. Huang & H.X. Hao (2015) 'Crystallization Methods for Preparation of Nanocrystals for Drug Delivery System'. Current Pharmaceutical Design, 21 (22):3131-3139.  
Shirsat N., Avesh M., Whelan J., English N., Glennon B., Al-Rubeai M. (2015) 'Revisiting Verhulst and Monod models: analysis of batch and fed-batch culture'. Cytotechnology, 67 (3):515-530.  
Simon, L.L. and Pataki, H. and Marosi, G. and Meemken, F. and Hungerbühler, K. and Baiker, A. and Tummala, S. and Glennon, B. and Kuentz, M. and Steele, G. and Kramer, H.J.M. and Rydzak, J.W. and Chen, Z. and Morris, J. and Kjell, F. and Singh, R. and Gani, R. and Gernaey, K.V. and Louhi-Kultanen, M. and Oreilly, J. and Sandler, N. and Antikainen, O. and Yliruusi, J. and Frohberg, P. and Ulrich, J. and Braatz, R.D. and Leyssens, T. and Von Stosch, M. and Oliveira, R. and Tan, R.B.H. and Wu, H. and Khan, M. and Ogrady, D. and Pandey, A. and Westra, R. and Delle-Case, E. and Pape, D. and Angelosante, D. and Maret, Y. and Steiger, O. and Lenner, M. and Abbou-Oucherif, K. and Nagy, Z.K. and Litster, J.D. and Kamaraju, V.K. and Chiu, M.-S. (2015) 'Assessment of recent process analytical technology (PAT) trends: A multiauthor review'. Organic Process Research and Development, 19 (1):3-62. Available Online  
S. Ferguson, G. Morris, H. Hao, M. Barrett & B. Glennon (2014) 'Automated Self Seeding of Batch Crystallizations via Plug Flow Seed Generation'. Chemical Engineering Research and Design, 92 (11):2534-2541.  
Dr Olivier Habimana
Gazzola, G., Habimana, O., Murphy, C. D., Casey, E. (2015) 'Comparison of biomass detachment from biofilms of two different Pseudomonas spp. under constant shear conditions'. Biofouling, 31 (1):13-18. Available Online  
Allen, A., Semiao, A. J. C., Habimana, O., Heffernan, R., Safari, A., Casey, E. (2015) 'Nanofiltration and reverse osmosis surface topographical heterogeneities: Do they matter for initial bacterial adhesion?'. Journal of Membrane Science, 486 :10-20. Available Online  
Cao, H. Y., Habimana, O., Semiao, A. J. C., Allen, A., Heffernan, R., Casey, E. (2015) 'Understanding particle deposition kinetics on NF membranes: A focus on micro-beads and membrane interactions at different environmental conditions'. Journal of Membrane Science, 475 :367-375. Available Online  
Heffernan, R., Habimana, O., Semiao, A. J. C., Cao, H., Safari, A., Casey, E. (2014) 'A physical impact of organic fouling layers on bacterial adhesion during nanofiltration'. Water Research, 67 :118-128. Available Online  
Habimana, O., Nesse, L. L., Moretro, T., Berg, K., Heir, E., Vestby, L. K., Langsrud, S. (2014) 'The persistence of Salmonella following desiccation under feed processing environmental conditions: a subject of relevance'. Letters in Applied Microbiology, 59 (5):464-470. Available Online  
Semiao, A. J. C., Habimana, O., Casey, E. (2014) 'Bacterial adhesion onto nanofiltration and reverse osmosis membranes: Effect of permeate flux'. Water Research, 63 :296-305. Available Online  
Dr Ioscani Jimenez Del Val
Yuzhou Fan, Ioscani Jimenez Del Val, Christian Mller, Anne Mathilde Lund, Jette Wagtberg Sen, Sren Kofoed Rasmussen, Cleo Kontoravdi, Deniz Baycin?Hizal, Michael J Betenbaugh, Dietmar Weilguny, Mikael Rrdam Andersen (2015) 'A multi-pronged investigation into the effect of glucose starvation and culture duration on fed-batch CHO cell culture'. Biotechnology and Bioengineering, 112 (10):2172-2184.  
Yuzhou Fan, Ioscani Jimenez Del Val, Christian Mller, Jette Wagtberg Sen, Sren Kofoed Rasmussen, Cleo Kontoravdi, Dietmar Weilguny, Mikael Rrdam Andersen (2015) 'Amino acid and glucose metabolism in fed-batch CHO cell culture affects antibody production and glycosylation'. Biotechnology and Bioengineering, 112 (3):521-535. Available Online  
Professor Donal MacElroy
English, N.J., and MacElroy, J.M.D. (2015) 'Perspectives on Molecular Simulation of Clathrate Hydrates: Progress, Prospects and Challenges'. Chemical Engineering Science .  
Bandaru, S., English, N.J., and MacElroy, J.M.D. (2014) 'Density functional theory calculations of catalytic mechanistic pathways for the formation of O2 involving Triazolylidene Iridium Complexes'. New Journal of Chemistry .  
Sullivan, J. A., Neville, E. M., Herron, R.,; Thampi, K.R., and MacElroy, J.M.D. (2014) 'Routes to visible light active C-doped TiO2 photocatalysts using carbon atoms from the Ti Precursors'. Journal of Photochemistry and Photobiology A-Chemistry .  
Dr Praveen Surolia
S Sheehan, PK Surolia, O Byrne, S Garner, P Cimo, X Li, DP Dowling, KR Thampi (2015) 'Flexible glass substrate based dye sensitized solar cells'. Solar Energy Materials and Solar Cells, 132 :237-244.  
Professor Ravindranathan Thampi
S. Sheehan, P.K. Surolia, O. Byrne, S. Garner, P. Cimo, X, Li. D.P. Dowling* and K. Ravindranathan Thampi* (2015) 'Flexible Glass Substrate Based Dye Sensitized Solar Cells'. Solar Energy Materials and Solar Cells, 132 :237-244.  
Ke Meng, Gang Chen* and K. Ravindranathan Thampi* (2015) 'Metal chalcogenides as counter electrode materials in quantum dot sensitized solar cells: a perspective'. Journal of Materials Chemistry A, 3 :23074-23089.  
Meng, K. and Surolia, P.K. and Byrne, O. and Thampi, K.R. (2015) 'Quantum dot and quantum dot-dye co-sensitized solar cells containing organic thiolate-disulfide redox electrolyte'. Journal of Power Sources, 275 :681-687. Available Online  
Sheehan, S.; Surolia, P.K.; Byrne, O.; Garner, S.; Cimo, P.; Li, X.; Dowling, D.P.; Thampi, K.R. (2015) 'Flexible glass substrate based dye sensitized solar cells'. Solar Energy Materials and Solar Cells, 132 :237-244. Available Online  
Ke Meng, Praveen K. Surolia, Owen Byrne and K. Ravindranathan Thampi* (2015) 'Quantum dot and quantum dot-dye co-sensitized solar cells containing organic thiolate-disulfide redox electrolyte'. Journal of Power Sources, 275 :681-687.  
Ke Meng, K. Ravindranathan Thampi* (2015) 'Efficient quasi-solid dye- and quantum dot- sensitized solar cells using thiolate/disulfide redox couple and CoS counter electrode'. ACS Applied Materials & Interfaces .  
Sullivan, J. A., Neville, E. M., Herron, R.,; Thampi, K.R., and MacElroy, J.M.D. (2014) 'Routes to visible light active C-doped TiO2 photocatalysts using carbon atoms from the Ti Precursors'. Journal of Photochemistry and Photobiology A-Chemistry .  


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