Below is the list of research publications for the UCD Institute for Discovery in the academic year 2016/17.
| Professor Anthony Brabazon | |
| Tuite, C., O'Neill, M. and Brabazon, A. (2016) 'Economic and financial modeling with Genetic Programming: A Review' In: Chen, S-H. and Kaboudan, M (eds). Handbook of Computational Economics and Finance. Oxford, UK: Oxford University Press. | |
| Dr Eimear Byrne | |
| E. Byrne, M. Calderini (2017) 'Index-Coding, Network Coding and Broadcast with Side-Information' In: M. Greferath, M. Pavcevic, A. Vazquez-Castro, N. Silberstein (eds).Random Network Coding and Designs Over GF(q). Berlin: Springer-Verlag. | |
| Assoc Professor Claire Gormley | |
Gormley, I.C. and Fruhwirth-Schnatter, S. (2017) 'Mixtures of experts' In: Celeux, G., Fruhwith-Schnatter, S. and Robert, C (eds). Handbook of mixture analysis. USA: CRC Press (Taylor & Francis Group).  |
|
| Assoc Professor Vladimir Lobaskin | |
| H. Lopez, E. Brandt, A. Mirzoev, D. Zhurkin, A. Lyubartsev, and V. Lobaskin (2017) 'Multiscale modelling of bionano interface' In: L. Tran, M.A. Banares, R. Rallo (eds).Modelling the Toxicity of Nanoparticles. Cham, Switzerland: Springer International Publishing. , pp.173-206 |
|
| Professor Brendan Murphy | |
| McParland, D. and Murphy, T.B. (2017) 'High-Dimensional Data' In: Celeux, G., Früwirth-Schnatter, S. and Robert, C.P (eds). Handbook of Mixture Analysis. Boca Raton, FL: CRC Press. | |
| Professor Michael O'Neill | |
| Tuite, C., O'Neill, M. and Brabazon, A. (2016) 'Economic and financial modeling with Genetic Programming: A Review' In: Chen, S-H. and Kaboudan, M (eds). Handbook of Computational Economics and Finance. Oxford, UK: Oxford University Press. | |
| Dr Lennon Ó'Náraigh | |
| Lennon O'Naraigh and Prashant Valluri (2017) 'Stability Analysis and Drect Numerical Simulation for Two-Phase Flows and Heat Transfer: A Complementary Approach' In: John R Thome (eds). Encyclopedia of Two-Phase Heat Transfer and Flow III. Singapore: World Scientific Press. | |
| Professor Anthony Brabazon | |
| Squillero, G., Sim, K., Ascheid, G., Bacardit, J., Brabazon, A. et al. (eds.) (Ed.). (2017)Applications of Evolutionary Computing, Lecture Notes in Computer Science Vol 10199. Berlin: Springer Verlag. |
|
Back to Top
Peer Reviewed Journals
| Professor Anthony Brabazon | |
| Agapitos, A., O'Neill, M. and Brabazon, A. (2017) 'Regularised Gradient Boosting for Financial Time-series Modelling'. Computational Management Science, 14 (3):367-391. |
|
| Nicolau, M., Perez, D., O'Neill, M. and Brabazon, A. (2017) 'Evolutionary Behaviour Tree Approaches for Navigating Platform Games'. IEEE Transactions on Computational Intelligence and AI in Games, 9 (3):227-238. |
|
| Loughran, R., Agapitos, A., Kattan, A., Brabazon, A. O'Neill, M. (2017) 'Feature Selection for Speaker Verification using Genetic Programming'. Evolutionary Intelligence, 10 (1-2):1-21. |
|
| Brabazon, A., Lipinski, P. and Hamill, P. (2016) 'Characterising Order Book Evolution Using Self-Organising Maps'. Evolutionary Intelligence, 9 (4):167-179. |
|
| Assoc Professor Nicolae Buchete | |
| Martini, L; Kells, A; Covino, R; Hummer, G; Buchete, NV; Rosta, E (2017) 'Variational Identification of Markovian Transition States'. Physical Review X . |
|
| McDermott, N; Meunier, A; Wong, S; Buchete, V; Marignol, L (2017) 'Profiling of a panel of radioresistant prostate cancer cells identifies deregulation of key miRNAs'. Clinical and Translational Radiation Oncology, 2 :63-68. |
|
| Ryan, K; Neumayer, SM; Maraka, HVR; Buchete, NV; Kholkin, AL; Rice, JH; Rodriguez, BJ (2017) 'Thermal and aqueous stability improvement of graphene oxide enhanced diphenylalanine nanocomposites'. Science and Technology of Advanced Materials, 18 (1):172-179. |
|
| Leahy, CT; Kells, A; Hummer, G; Buchete*, NV; Rosta*, E (2017) 'Peptide dimerization-dissociation rates from replica exchange molecular dynamics'. Journal of Chemical Physics. | |
| Sanchez-Sanz, G; Tywoniuk, B; Matallanas, D; Romano, D; Nguyen, LK; Kholodenko, BN; Rosta, E; Kolch, W; Buchete, NV (2016) 'SARAH Domain-mediated MST2-RASSF Dimeric Interactions'. PLoS Computational Biology, 12 (10):e1005051. |
|
| Dr Eimear Byrne | |
| E. Byrne, M. Calderini (2017) 'Bounding the Optimal Rate of the ICSI and ICCSI Problems'. SIAM Journal on Discrete Mathematics, 31 (2):1403-1427. | |
| Eimear Byrne and Alberto Ravagnani (2017) 'Covering Radius of Matrix Codes Endowed with the Rank Metric'. SIAM Journal on Discrete Mathematics, 31 (2):927-944. | |
| E. Byrne, M. Calderini (2017) 'Error Correction for Index Coding With Coded Side Information'. IEEE Transactions on Information Theory, 63 (6):3712-3728. | |
| Ivan Blanco-Chacon, Eimear Byrne, John Sheekey, Iwan Duursma (2017) 'On the Zeta Function of a Rank Metric Code'. Designs, Codes, and Cryptography . | |
| M. Bossert, E. Byrne, E. Soljanin (2016) 'Coding Theory in the Time of Big Data (Dagstuhl Seminar 16321)'. Dagstuhl Reports, 6 (8):1-20. |
|
| E. Byrne (2016) 'Subspaces, Matrices and Codes'. IEEE Information Theory Society Newsletter, 66 (3):5-13. | |
| Professor Frederic Dias | |
| Gopinathan, D; Venugopal, M; Roy, D; Rajendran, K; Guillas, S; Dias, F (2017) 'Uncertainties in the 2004 Sumatra-Andaman source through nonlinear stochastic inversion of tsunami waves'. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences . | |
| O'Brien, L; Renzi, E; Dudley, JM; Clancy, C; Dias, F (2017) 'Extreme wave events in Ireland: 2012-2016'. Natural Hazards and Earth System Science . | |
| Dias, F; Renzi, E; Gallagher, S; Sarkar, D; Wei, Y; Abadie, T; Cummins, C; Rafiee, A (2017) 'Analytical and computational modelling for wave energy systems: the example of oscillating wave surge converters'. Acta Mechanica Sinica/Lixue Xuebao, 33 (4):647-662. | |
| Ren, ZY; Zhao, X; Wang, BL; Dias, F; Liu, H (2017) 'Characteristics of wave amplitude and currents in South China Sea induced by a virtual extreme tsunami'. Journal of Hydrodynamics, 29 (3):377-392. | |
| Pellet, L; Christodoulides, P; Bean, C; Donne, S; Dias, F (2017) 'On the interaction of waves with nearly equal frequencies but nearly opposite directions'. Theoretical and Applied Mechanics Letters, 7 (3):138-144. | |
| Salmanidou, DM; Guillas, S; Georgiopoulou, A; Dias, F (2017) 'Statistical emulation of landslide tsunami hazard in the NE Atlantic Ocean'. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 473 (2200):20170026. | |
| Cummins, C; Dias, F (2017) 'A new model of viscous dissipation for the oscillating wave surge converter'. Journal of Engineering Mathematics, 103 :195-216. | |
| Ardhuin, F; ...; Dias, F; ...; Xie, J (2017) 'Measuring currents, ice drift, and waves from space: the Sea Surface KInematics Multiscale monitoring (SKIM) concept'. Ocean Science. | |
| Gleeson, E; Gallagher, S; Clancy, C; Dias, F (2017) 'NAO and extreme ocean states in the Northeast Atlantic Ocean'. Advances in Science and Research, 14 :23-33. |
|
| Wei, Y; Abadie, T; Dias, F (2017) 'A cost-effective method for modelling wave-OWSC interaction'. International Journal of Offshore and Polar Engineering . | |
| Brennan, J; Clancy, C; Harrington, J; Cox, R; Dias, F (2017) 'Analysis of the pressure at a vertical barrier due to extreme wave run-up over variable bathymetry'. Theoretical and Applied Mechanics Letters . | |
| Ponce de Leon, S; Bettencourt, JH; Dias, F (2017) 'Comparison of hindcasted extreme waves with Doppler radar measurements in the North Sea'. Ocean Dynamics, 67 (1):103-115. | |
| Sarkar, D; Contal, E; Vayatis, N; Dias, F (2016) 'Prediction and optimization of wave energy converter arrays using a machine learning approach'. Renewable Energy, 97 :504-517. | |
| Assoc Professor David Edelman | |
| David Edelman and Patrick O'Sullivan (2016) 'Optimal derivatives: portfolios, payoffs and preferences'. European Journal of Finance . | |
| Professor Nial Friel | |
| L. Bouranis, N. Friel and F. Maire. (2017) 'Efficient Bayesian inference for exponential random graph models by correcting the pseudo-posterior distribution'. Social Networks,50 :98-108. | |
| N. Friel, J.P. McKeone, C.J. Oates and A.N. Pettitt. (2017) 'Investigation of the widely applicable Bayesian information criterion'. Statistics and Computing, 27 (3):833-844. | |
| T. Ryan, J. Wyse and N. Friel. (2017) 'Bayesian model selection for the latent position cluster model for social networks'. Network Science, 5 (1):70-91. | |
| J. Wyse, N.Friel and P. Latouche. (2017) 'Inferring structure in bipartite networks using the latent blockmodel and exact ICL'. Network Science, 5 (1):45-69. | |
| R. Rastelli, N. Friel and A.E. Raftery (2016) 'Properties of latent variable network models'.Network Science, 4 (4):407-432. | |
| R. Rastelli, N. Friel and A.E. Raftery. (2016) 'Properties of latent variable network models'.Network Science, 4 (4):407-432. |
|
| Assoc Professor Claire Gormley | |
| McParland, D; Phillips, CM; Brennan, L; Roche, HM and Gormley, IC. (2017) 'Clustering high-dimensional mixed data to uncover sub-phenotypes: joint analysis of phenotypic and genotypic data'. Statistics in Medicine . | |
| Assoc Professor Russell Higgs | |
| Higgs, R.J. (2017) 'Commutators and projective character tables'. Communications in Algebra, 45 (12):5180-5187. | |
| Higgs, R.J. (2017) 'Degree equality of projective characters'. Communications in Algebra,45 (10):4275-4282. | |
| Assoc Professor Vladimir Lobaskin | |
| V. Lobaskin, R. R. Netz (2016) 'Diffusive-convective transition in the non-equilibrium charging of an electric double layer'. EPL (Europhysics Letters), 116 :58001. |
|
| T. Molotilin, V. Lobaskin, O. Vinogradova (2016) 'Electrophoresis of Janus particles: A molecular dynamics simulation study'. Journal of Chemical Physics, 145 :244704. |
|
| L Coburn, H Lopez, BJ Caldwell, E Moussa, C Yap, R Priya, A Noppe, AP Roberts, V Lobaskin, AS Yap, Z Neufeld, and GA Gomez (2016) 'Contact inhibition of locomotion and mechanical cross-talk between cell-cell and cell-substrate adhesion determine the pattern of junctional tension in epithelial cell aggregates'. Molecular Biology of the Cell, 27 (22):3436-3448. |
|
| Professor Gary McGuire | |
| Omran Ahmadi, Faruk Göloğlu, Robert Granger, Gary McGuire, Emrah Sercan Yilmaz (2016) 'Fibre products of supersingular curves and the enumeration of irreducible polynomials with prescribed coefficients'. Finite Fields and their Applications, 42 :128-164. | |
| Professor Brendan Murphy | |
| Fop, M., Smart, K. and Murphy, T.B. (2017) 'Variable selection for latent class analysis with application to low back pain diagnosis'. Annals of Applied Statistics . | |
| Foley, R.W., Maweni, R.M., Gorman, L., Murphy, K., Lundon, D.J., Durkan, G., Power, R., O'Brien, F., O'Malley, K.J., Galvin, D.J., Murphy, T.B. and Watson, R.W. (2016) 'The ERSPC Risk Calculators Significantly Outperform The PCPT 2.0 In The Prediction Of Prostate Cancer; A Multi-Institutional Study'. BJU International, 118 (5):706-713. | |
| Professor Adrian Ottewill | |
| Marc Casals, Chris Kavanagh, Adrian C. Ottewill (2016) 'High-order late-time tail in a Kerr spacetime'. Physical Review D - Particles, Fields, Gravitation and Cosmology, 94 :124053-1-124053-30. | |
| Marc Casals, Chris Kavanagh, Adrian C. Ottewill (2016) 'High-order late-time tail in a Kerr spacetime'. Physical Review D - Particles, Fields, Gravitation and Cosmology, 94 :124053. | |
| Assoc Professor Andrew Parnell | |
| Hoffman, Jeremy S and Clark, Peter U and Parnell, Andrew C and He, Feng (2017) 'Regional and global sea-surface temperatures during the last interglaciation'. Science AAAS, 355 (6322):276-279. | |
| WK Soh, IJ Wright, KL Bacon, TI Lenz, Margret Steinthorsdottir, AC Parnell, JC McElwain (2017) 'Palaeo leaf economics reveal a shift in ecosystem function associated with the end-Triassic mass extinction event'. Nature Plants, :17104. | |
| Alexander J Wright, Robin J Edwards, Orson van de Plassche, Maarten Blaauw, Andrew C Parnell, Klaas van der Borg, Arie FM de Jong, Helen M Roe, Katherine Selby, Stuart Black (2017) 'Reconstructing the accumulation history of a saltmarsh sediment core: Which age-depth model is best?'. Quaternary Geochronology, 39 :36-67. | |
| Andrew C Kemp, Troy D Hill, Christopher H Vane, Niamh Cahill, Philip M Orton, Stefan A Talke, Andrew C Parnell, Kelsey Sanborn, Ellen K Hartig (2017) 'Relative sea-level trends in New York City during the past 1500 years'. Holocene . | |
| J Clowry, J Sheridan, R Healy, S Deady, D Keegan, K Byrne, G Cullen, H Mulcahy, H Comber, AC Parnell, G Doherty, A Lally (2017) 'Increased non‐melanoma skin cancer risk in young patients with inflammatory bowel disease on immunomodulatory therapy: a retrospective single centre cohort study'. Journal of the European Academy of Dermatology and Venereology . | |
| B Hernandez, AE Raftery, SR Pennington, AC Parnell (2017) 'Bayesian Additive Regression Trees using Bayesian model averaging'. Statistics and Computing, :1-22. | |
| CM Rubin, BP Horton, K Sieh, JE Pilarczyk, P Daly, N Ismail, AC Parnell (2017) 'Highly variable recurrence of tsunamis in the 7,400 years before the 2004 Indian Ocean tsunami'. Nature Communications, 8 . | |
| McParland, D.; Baron, S.; O'Rourke, S.; Dowling, D.; Ahearne, E.; Parnell, A (2017) 'Prediction of tool-wear in turning of medical grade cobalt chromium molybdenum alloy (ASTM F75) using non-parametric Bayesian models'. Journal of Intelligent Manufacturing . | |
| AC Parnell (2016) 'Discussion of: A Bayesian multinomial regression model for paleoclimate reconstruction with time uncertainty'. Environmetrics, 27 (7):431-433. | |
| Colm Clancy, John O'Sullivan, Conor Sweeney, Frédéric Dias, Andrew C. Parnell (2016) 'Spatial Bayesian hierarchical modelling of extreme sea states'. Ocean Modelling . | |
| Andrew C Parnell, John Haslett, James Sweeney, Thinh K. Doan, Judy R.M. Allen, Brian Huntley (2016) 'Joint palaeoclimate reconstruction from pollen data via forward models and climate histories'. Quaternary Science Reviews, 151 :111-126. | |
| Assoc Professor Diane Payne | |
| Xiong, Hang; Payne, Diane (2017) 'Characteristics of Chinese Rural Network: Evidence from Villages in Central China'. Chinese Journal of Sociology . | |
| Xiong,Hang; Kinsella,Stephen; Payne,Diane. (2016) 'Self-enforcing Agreement in Cooperative Teams: An Agent-based Modeling Approach'. Complex Adaptive Systems Modeling, 4 (1):1-19. |
|
| Dr Lennon Ó'Náraigh | |
| Lennon O'Naraigh (2017) 'Advection of nematic liquid crystals by chaotic flow'. Physics of Fluids . | |
| Professor Brendan Murphy | |
| Giudici, P., Greselin, F., Murphy, T.B. and Rampichini, C. (2017) 'CLADAG 2015 special issue: Selected papers on classification and data analysis' Statistical Analysis and Data Mining, 10 (1):5-5. | |
| Murphy, TB (2016) 'Editorial: Statistical Thinking and Practice' Statistical Analysis and Data Mining, 9 (6):387-387. | |
| Assoc Professor Andrew Parnell | |
| Eugene Kashdan, Dominique Duncan, Andrew Parnell and Heinz Schättler (2016) 'Mathematical methods in systems biology' Mathematical Biosciences and Engineering, 13 (6):i-ii. |
|
Back to Top
Conference Publications
| Professor Anthony Brabazon | |
| Brabazon, A (2017) Foraging Inspired Algorithms: A Design Perspective 13th International Conference on Natural Computation, Fuzzy Systems and Knowledge Discovery, | |
| Le, N., O'Neill, M., Fagan, D. and Brabazon, A. (2017) Social Grammatical Evolution with Imitation Learning for Real-Valued Function Estimation IEEE Congress on Evolutionary Computation (CEC 2017), 1572 - 1578 | |
| Dr Eimear Byrne | |
| E. Byrne, I. Blanco-Chacon, I. Duursma, J. Sheekey (2017) Puncturing, Shortening and the Rank Metric Zeta Function Finite Fields and Their Applications (Fq13), |
|
| Professor Mohand Kechadi | |
| Bendechache, Malika; Le-Khac, Nhien-An; Kechadi M-Tahar (2016) Hierarchical Aggregation Approach for Distributed clustering of spatial datasets 16th IEEE International Confenrece on Data Mining (ICDM), Spatial and Spatiotemporal Data Mining Workshop, Barcelona, Spain, | |
| Bendechache, Malika; Le-Khac, Nhien-An; Kechadi, M-Tahar (2016) Efficient Large Scale Clustering based on Data Partitioning 3rd IEEE International Conference on Data Science and Advanced Analytics, Montreal, Canada, | |
| Assoc Professor James McDermott | |
| Van Loi Cao and Miguel Nicolau and James McDermott (2016) A Hybrid Autoencoder and Density Estimation Model for Anomaly Detection . In: Julia Handl and Emma Hart and Peter R. Lewis and Manuel L\'opez-Ib\'a\~nez and Gabriela Ochoa and Ben Paechter eds. Parallel Problem Solving from Nature - PPSN XIV, 14th International Conference, Edinburgh, UK, September 17-21, 2016, Proceedings, 717 - 726 | |
| Dr Miguel Nicolau | |
| James McDermott and Miguel Nicolau (2017) Late-Acceptance Hill-Climbing with a Grammatical Program Representation . In: Gabriela Ochoa eds. Genetic and Evolutionary Computation Conference - GECCO 2017, Genetic and Evolutionary Computation Conference Companion, Berlin, Germany, July 15-19, 2017, Proceedings, Berlin, Germany, 241 - 242 | |
| Van Loi Cao and Miguel Nicolau and James McDermott (2017) Late-Acceptance and Step-Counting Hill-Climbing GP for Anomaly Detection . In: Gabriela Ochoa eds. Genetic and Evolutionary Computation Conference - GECCO 2017, Genetic and Evolutionary Computation Conference Companion, Berlin, Germany, July 15-19, 2017, Proceedings, Berlin, Germany, 221 - 222 | |
| Stefan Forstenlechner and David Fagan and Miguel Nicolau and Michael O'Neill (2017) A Grammar Design Pattern for Arbitrary Program Synthesis Problems in Genetic Programming . In: James McDermott and Mauro Castelli and Lukas Sekanina and Evert Haasdijk and Pablo Garcia-Sanchez eds. European Conference on Genetic Programming, 20th European Conference, EuroGP 2017, Amsterdam, The Netherlands, April 19-21, 2017, Proceedings, Amsterdam, The Netherlands, 262 - 277 | |
| Van Loi Cao and Miguel Nicolau and James McDermott (2016) A Hybrid Autoencoder and Density Estimation Model for Anomaly Detection . In: Julia Handl and Emma Hart and Peter R. Lewis and Manuel L\'opez-Ib\'a\~nez and Gabriela Ochoa and Ben Paechter eds. Parallel Problem Solving from Nature - PPSN XIV, 14th International Conference, Edinburgh, UK, September 17-21, 2016, Proceedings, 717 - 726 | |
| Dr Lennon Ó'Náraigh | |
| Lennon O'Naraigh, Iain Bethune, David Scott, Zlatko Solomenko, Peter Spelt, Prashant Valluri (2017) Direct numerical simulation of interfacial instability in gas-liquid flowsParallel Computational Fluid Dynamics, | |
Back to Top
Other Publications
| Assoc Professor Claire Gormley | |
| Gormley, I.C. (2016) MEclustnet: an R package to fit the mixture of experts latent position cluster model to network data. Software. |
|
| Professor Brendan Murphy | |
| Maweni, R., Foley, R., Gorman, L., Murphy, K., Lundon, D., Durkan, G., O'Brien, F., O'Malley, K., Galvin, D., Murphy, T.B., Watson, RW. (2016) Improving Multivariable Prostate Cancer Risk Assessment. Abstract. | |