chemistry

UCD School of Chemistry

UCD School of Chemistry - Research Publications 2015/16

Below is the list of research publications for the UCD School of Chemistry in the academic year 2015/16.



Books Chapter

Dr Eoghan McGarrigle
Matlock, JV Aggarwal, VK McGarrigle, EM (2016) '(2-Bromoethyl)diphenylsulfonium Trifluoromethanesulfonate' In: Paquette, LA Crich, D Fuchs, PL Molander, GA (eds). e-EROS Encyclopedia of Reagents for Organic Synthesis. Chichester: John Wiley & Sons Ltd. Available Online  
Assoc Professor James Sullivan
James A Sullivan (2016) 'Titanium based materials for non-asymmetric synthesis' In: Michael North (eds). Sustainable Catalysis with non endangered metals. London: RSC. , pp.89-102  

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Peer Reviewed Journals

Professor Martin Albrecht
Cesari, C (Cesari, Cristiana)[ 1,2 ] Mazzoni, R (Mazzoni, Rita)[ 2 ] Muller-Bunz, H (Mueller-Bunz, Helge)[ 1 ] Albrecht, M (Albrecht, Martin)[ 1 ] (2015) 'Ruthenium(0) complexes with triazolylidene spectator ligands: Oxidative activation for (de)hydrogenation catalysis'. Journal of Organometallic Chemistry, 793 :256262-262.  
A. Kruger, G. Michaud, A Dowling, H. Muller-Bunz, M. Albrecht (2015) 'Ligand exchange processes in abnormal N-heterocyclic carbene rhodium complexes'. Z ANORG ALLG CHEM, 641 (12-13):2250-2257.  
Assoc Professor Dermot Brougham
E. M. Surender, S. Comby, S. Martyn, B. Cavanagh, T. C. Lee, D. F. Brougham, T. Gunnlaugsson. (2016) 'Cyclen lanthanide-based micellar structures for application as luminescent [Eu(III)] and magnetic [Gd(III)] resonance imaging (MRI) contrast agents'. Chemical Communications, 52 :10858-10861.  
B. Wu, W. Chassé, R. Peters, T. Brooijmans, A. A. Dias, A. Heise, C. J. Duxbury, A. Kentgens, D. F. Brougham, V. M. Litvinov (2016) '1. Network structure in acrylate systems: the effect of junction topology on crosslink density and macroscopic gel properties'. Macromolecules .  
T. Borase, E. K. Fox, F. El Haddassi, S.-A. Cryan, D. F. Brougham (2016) 'Glyco-copolypeptide Grafted Magnetic Nanoparticles: The interplay between particle dispersion and RNA loading'. Polymer Chemistry, 7 :3221-3224.  
J. K. Stolarczyk, A. Deak, D. F. Brougham (2016) 'Nanoparticle clusters: assembly and control over internal order, current capabilities and future potential'. Advanced Materials, 28 :5400-5424.  
D. Zámbó, S. Pothorszky, D. F. Brougham, A. Deák (2016) 'Aggregation kinetics and cluster structure of amino-PEG covered gold nanoparticles'. RSC Advances, 6 :27151-27157.  
Professor Kenneth A Dawson
Hu, W. and Culloty, S. and Darmody, G. and Lynch, S. and Davenport, J. and Ramirez-Garcia, S. and Dawson, K. and Lynch, I. and Doyle, H. and Sheehan, D. (2015) 'Neutral red retention time assay in determination of toxicity of nanoparticles'. Marine Environmental Research, 111 :158-161. Available Online  
Canesi L, Ciacci C, Bergami E, Monopoli MP, Dawson KA, Papa S, Canonico B, Corsi I (2015) 'Evidence for immunomodulation and apoptotic processes induced by cationic polystyrene nanoparticles in the hemocytes of the marine bivalve Mytilus'. Marine Environmental Research .  
Bergami E, Bocci E, Vannuccini ML, Monopoli M, Salvati A, Dawson KA, Corsi I (2015) 'Nano-sized polystyrene affects feeding, behavior, and physiology of brine shrimp Artemia franciscana larvae'. Ecotoxicology and Environmental Safety .  
Hristov DR, Mahon E, Dawson KA (2015) 'Controlling aqueous silica nanoparticle synthesis in the 10-100 nm range'. Chemical Communications .  
Assoc Professor Paul Evans
A. Keeley, S. McCauley and P. Evans (2016) 'A Ring Closing Metathesis-Manganese Dioxide Oxidation Sequence for the Synthesis of Substituted Pyrroles'. Tetrahedron, 72 :2552-2559.  
W. Doherty and P. Evans (2016) 'Aminooxylation Horner-Wadsworth-Emmons Sequence for the Synthesis of Enantioenriched g-Functionalized Vinyl Sulfones'. Journal of Organic Chemistry, 81 :1416-1424.  
Tiwari U, Sheehy E, Rai D, Gaffney M, Evans P, and Cummins E. (2015) 'Quantitative human exposure model to assess the level of glucosinolates upon thermal processing of cruciferous vegetables'. LWT -- Food Science and Technology, 63 (1):253-261.  
Professor Declan Gerard Gilheany
P. A. Byrne and D. G. Gilheany (2016) 'The Mechanism of Phosphonium Ylide Alcoholysis & Hydrolysis: Concerted addition of the O-H bond across the P=C bond'. Chemistry - A European Journal .  
Al Sulaimi S. S. and Rajendran, K. V. and Gilheany, D. G. (2015) 'Lithium Borohydride for Achiral and Stereospecific Reductive Boronation at Phosphorus: Lack of Electronic Effects on Stereoselective Formation of Alkoxyphosphonium Salts'. European Journal of Organic Chemistry, 2015 (27):5959-5965.  
N. P. Kenny, K. V. Rajendran and D. G. Gilheany (2015) 'Chemoselective Reduction of the Phosphoryl Bond of O-Alkyl Phosphinates and related Compounds: An Apparently Impossible Transformation'. Chemical Communications, 51 (92):16561-16564.  
Professor Patrick Guiry
McCartney, D. Nottingham, C. Muller-Bunz, H. Guiry, P. J. (2015) 'Exploiting the gem-Disubstitution Effect in FcPHOX and HetPHOX P,N Ligands: Synthesis and Applications in Pd-Catalyzed Intermolecular Heck Reactions'. Journal of Organic Chemistry, 80 (20):10151-10162.  
O'Reilly, S. Aylward, M. Keogh-Hansen, C. Fitzpatrick, B. McManus, H. A. Muller-Bunz, H. Guiry, P. J. (2015) 'Synthesis of Bis(oxazoline) Ligands Possessing C-5 gem-Disubstitution and Their Application in Asymmetric Friedel-Crafts Alkylations'. Journal of Organic Chemistry, 80 (20):10177-10186.  
Nottingham, C. Benson, R. Muller-Bunz, H. Guiry, P. J. (2015) 'Synthesis of Ferrocene Oxazoline N,O ligands and Their Application in Asymmetric Ethyl- and Phenylzinc Additions to Aldehydes'. Journal of Organic Chemistry, 80 (20):10163-10176.  
Mr Philip Kelly
Delyan R. Hristov, Louise Rocks, Philip Kelly, Steffi Thomas, Andrzej S. Pitek, Paolo Verderio, Eugene Mahon, Kenneth A. Dawson (2015) 'Tuning of nanoparticle biological functionality through controlled surface chemistry and characterisation at the bioconjugated nanoparticle surface'. Scientific Reports .  
Dr Devrim Kilinc
Kilinc, D., Schwab, J., Rampini, S., Ikpekha, O. W., Thampi, A., Blasiak, A., Li, P., Schwamborn, R., Kolch, W., Matallanas, D., Lee, G. U. (2015) 'A microfluidic dual gradient generator for conducting cell-based drug combination assays'. Integr Biol (Camb) .  
Professor Gil Lee
S. Rampini, P. Li, and G. U Lee (2016) 'Micromagnet arrays enable precise manipulation of individual biological analyte¿superparamagnetic bead complexes for separation and sensing'. Lab on a Chip .  
Devrim Kilinc, Cindi L Dennis, Gil U Lee (2016) 'Bio-Nano-Magnetic Materials for Localized Mechanochemical Stimulation of Cell Growth and Death'. Advanced Materials .  
Devrim Kilinc, Jefrem Schwab, Stefano Rampini, Oshoke W Ikpekha, Ashwin Thampi, Agata Blasiak, Peng Li, Robert Schwamborn, Walter Kolch, David Matallanas, Gil U Lee (2016) 'A microfluidic dual gradient generator for conducting cell-based drug combination assays'. Integrative Biology .  
Agata Blasiak, Gil U Lee, Devrim Kilinc (2015) 'Neuron Subpopulations with Different Elongation Rates and DCC Dynamics Exhibit Distinct Responses to Isolated Netrin-1 Treatment'. ACS Chemical Neuroscience, 8 (9):1578-1590.  
Dr Eugene Mahon
Hristov DR, Mahon E, Dawson KA (2015) 'Controlling aqueous silica nanoparticle synthesis in the 10-100 nm range'. Chemical Communications .  
Hristov DR, Mahon EDawson KA (2015) 'Controlling aqueous silica nanoparticle synthesis in the 10-100 nm range'. Chemical Communications .  
Mahon E, Barboiu M (2015) 'Synthetic multivalency for biological applications'. Organic and Biomolecular Chemistry, 13 (43):10590-10599.  
Dr Eoghan McGarrigle
Medina, S Harper, MJ Balmond, EI Miranda, S Crisenza, GEM Coe, DM McGarrigle, EM Galan MC (2016) 'Stereoselective Glycosylation of 2-Nitrogalactals Catalyzed by a Bifunctional Organocatalyst'. Organic Letters, 18 . Available Online  
Matlock, J. V. Svejstrup, T. D. Songara, P. Overington, S. McGarrigle, E. M. Aggarwal, V. K. (2015) 'Synthesis of 6- and 7-Membered N-Heterocycles Using α-Phenylvinylsulfonium Salts'. Organic Letters, 17 (20):5044-5047. Available Online  
Assoc Professor Grace Morgan
Anthony J. Fitzpatrick, Paulo N. Martinho, Brendan J. Gildea, John D. Holbrey, Grace G. Morgan (2016) 'Robust Room Temperature Hysteresis in an FeIII Spin Crossover Metallomesogen'. European Journal of Inorganic Chemistry, :2025-2029.  
J. A. Kitchen, N. Zhang, A. B. Carter, A. J. Fitzpatrick, G. G. Morgan, (2016) 'Structural and magnetic properties of novel dinuclear Cu(II) complexes featuring triazolyl-naphthalimide ligands'. Journal of Coordination Chemistry .  
A. J. Fitzpatrick, S. Stepanovic, H. Müller-Bunz, M. A. Gruden-Pavlovi?, P. García-Fernández, G. G. Morgan (2016) 'Challenges in assignment of orbital populations in a high spin manganese(III) complex'. Dalton Transactions, 45 :6702-6708.  
Anthony J. Fitzpatrick, Helen O'Connor, Grace G. Morgan (2015) 'A Room Temperature Spin Crossover Ionic Liquid'. Dalton Transactions, 44 :20839-20842.  
A. J. Fitzpatrick, E. Trzop, H. Müller-Bunz, M. M. Dîrtu, Y. Garcia, E. Collet and G. G. Morgan (2015) 'Electronic vs. structural ordering in a manganese(III) spin crossover complex'. Chemical Communications, 51 :17540-17543.  
Professor Stefan Oscarson
Guazzelli L, McCabe OOscarson S (2016) 'Synthesis of part structures of Cryptococcus neoformans serotype C capsular polysaccharide'. Carbohydrate Research, 433 :5-13.  
Guazzelli L, Ulc ROscarson S (2016) 'Synthesis of a Glucuronic Acid-Containing Thioglycoside Trisaccharide Building Block and Its Use in the Assembly of Cryptococcus Neoformans Capsular Polysaccharide Fragments'. ChemistryOpen, 4 (6):729-739.  
Kerr SC, Fischer GJSinha MMcCabe OPalmer JMChoera TLim FYWimmerova MCarrington SDYuan SLowell CAOscarson SKeller NPFahy JV (2016) 'FleA Expression in Aspergillus fumigatus Is Recognized by Fucosylated Structures on Mucins and Macrophages to Prevent Lung Infection'. PLoS Pathogens, 12 (4).  
Ippel H, Miller MCV¿¿rtesy SZheng YCa¿¿ada FJSuylen DUmemoto KRoman¿¿ CHackeng TTai GLeffler HKopitz JAndr¿¿ SK¿¿bler DJim¿¿nez-Barbero JOscarson SGabius HJMayo KH (2016) 'Intra- and intermolecular interactions of human galectin-3: assessment by full-assignment-based NMR'. Glycobiology .  
Swanson, Michael D. Boudreaux, Daniel M. Salmon, Loic Chugh, Jeetender Winter, Harry C. Meagher, Jennifer L. Andre, Sabine Murphy, Paul V. Oscarson, Stefan Roy, Rene et al (2015) 'Engineering a Therapeutic Lectin by Uncoupling Mitogenicity from Antiviral Activity'. Cell, 163 (3):746-758.  
Glinschert, Anja Oscarson, Stefan (2015) 'Synthesis of four (4''-, 2''-, 2'-, and 6-) monodeoxy analogs of the trisaccharide α-D-Glcp-(1→3)-α-D-Manp-(1→2)-α-D-ManpOMe recognized by Calreticulin/Calnexin'. Carbohydrate Research . Available Online  
Assoc Professor Francesca Paradisi
Planchestainer, M Contente, M Cassidy, J Molinari, F Tamborini, L Paradisi, F (2016) 'Continuous flow biocatalysis: production and in-line purification of amines by immobilised transaminase from Halomonas elongata'. Green Chemistry .  
Kutasy B, Friedmacher FPes LCoyle DDoi TParadisi FPuri P (2016) 'Antenatal Retinoic Acid Administration Increases Trophoblastic Retinol-Binding Protein Dependent Retinol Transport in the Nitrofen Model of Congenital Diaphragmatic Hernia'. Pediatric Research, 79 :614-620.  
Cerioli, L Planchestainer, M Cassidy, J Tessaro, D Paradisi, F (2015) 'Characterization of a novel amine transaminase from Halomonas elongata'. Journal of Molecular Catalysis B-Enzymatic, 120 :141-150.  
Dr Susan Quinn
James P. Hall, Fergus E. Poynton, Páraic M. Keane, Sarah P. Gurung, John A. Brazier,David J. Cardin, Graeme Winter, Thorfinnur Gunnlaugsson, Igor V. Sazanovich, Michael Towrie, Christine J. Cardin, John M. Kelly & Susan J. Quinn (2015) 'Monitoring one-electron photo-oxidation of guanine in DNA crystals using ultrafast infrared spectroscopy'. Nature Chemistry, 7 :961-967.  
Dr Xiangming Zhu
R. Smith, H. Muller-Bunz, X. Zhu (2016) 'Investigation of alpha-thioglycoside donors: Reactivity studies toward configuration-controlled orthogonal activation in one-pot systems'. Organic Letters, 18 .  

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Conference Publications

Assoc Professor Francesca Paradisi
Anita Wester, Elaine O'Reilly, Marc Devocelle, Patricia E. Gallagher and Francesca Paradisi (2016) Biological Screening of Angiotensin-(1-7) Analogues incorporating the Non-natural d-Amino Acid ACCA 14th International Congress on Amino Acids, Peptides and Proteins,  

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