Biomolecular and Biomedical Science

School of Biomolecular and Biomedical Science - Research Publications 2021/2022

Below is the list of research publications for the School of Biomolecular and Biomedical Science in the academic year 2021/2022.



Book

Professor Jan Rosier
Rosier, J. (2022). The high-tech CEO: How to lead R&D When you're not the expert. doi:10.4324/9781003142379Available Online  

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Chapter

Dr Mohd Faheem Khan
Khan, M. F., & Murphy, C. D. (2022). Application of Microbial Biofilms in Biocatalysis and Biodegradation. In Enzymes for Pollutant Degradation (pp. 93-118). Springer Nature Singapore. doi:10.1007/978-981-16-4574-7_5Available Online  
Professor Cormac Murphy
Khan, M. F., & Murphy, C. D. (2022). Application of Microbial Biofilms in Biocatalysis and Biodegradation. In Enzymes for Pollutant Degradation (pp. 93-118). Springer Nature Singapore. doi:10.1007/978-981-16-4574-7_5Available Online  
Assoc Professor Kathy O'Boyle
Monaghan, M., Carthy, J., O'Boyle, K., Sokell, E., Wilson, W., & Naidoo, G. (2022). Designing buildings for student-centered learning: The Science Centre at University College Dublin. In Leading Change in Healthcare: Transforming Organizations Using Complexity, Positive Psychology and Relationship-Centered Care (pp. 211-235). doi:10.1201/9780429084119-13Available Online  
Assoc Professor David O'Connell
Lynch, C., Jordan, L., & J O’ Connell, D. (2021). Redesigning Spent Media from Cell Culture Bioprocess to Feed New Bacterial Fermentations. In Cell Engineering (pp. 129-146). Springer International Publishing. doi:10.1007/978-3-030-79871-0_5Available Online  

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Conference Paper

Professor William Gallagher
Sinclair, P., Wilkinson, M., Conroy, E., Downey, P., Gallagher, W., Docherty, N., et al. (2021). The effect of high fat diet and subsequent intentional weight loss on tumour burden in an animal model of spontaneous endometrial cancer. In BRITISH JOURNAL OF SURGERY Vol. 108 (pp. 1 page). OXFORD UNIV PRESS.  
Connor, K., Conroy, E., White, K., Shiels, L., Gallagher, W. M., Keek, S., et al. (2022). Expanding the utility of pre-clinical contrast enhanced CT (CE-CT) for tumour detection in orthotopic GBM models using radiomics. In WFNOS 2022 Abstract Book. The Korean Brain Tumor Society; The Korean Society for Neuro-Oncology; The Korean Society for Pediatric Neuro-Oncology. doi:10.14791/btrt.2022.10.f-1133Available Online  
Professor Breandán Kennedy
Selected Abstracts from Pharmacology 2021. (2021). In British journal of pharmacology Vol. 178 (pp. 4923-5006). doi:10.1111/bph.15648Available Online  
Kennedy, B. N., Fehilly, J., Cerrada-Gimenez, M., Kaja, S., Kalesnykas, G., Scoffin, R., & O'Brien, J. (2022). Visual behaviour-based screening of a randomised chemical library identifies small molecules that restore vision. In INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE Vol. 63.  
Professor John O'Connor
O'Connor, J., & Moreton, N. (2022). Targeting oxidative stress and prolyl hydroxylase domain inhibition as neuroprotective strategies against hypoxia in isolated rat hippocampal slices. In Federation of European Neuroscience Societies. Paris.  
O'Connor, J., & Puzio, M. (2022). The effects of the SOD mimetic, MnTMPyP, on synaptic signalling and viability in an in vitro rat OGD model.. In Federation of Neuroscience Societies. Paris.  
Dr Tadhg Ó'Cróinín
Carney, G., Clyne, M., & Ó'Cróinín, T. (2021). Fluoroquinolone resistance is associated with aerobic survival and is found at high levels in Campylobacter strains isolated from supermarket chicken.. In CampyUK Online Conference.  
Zermeno, D., Wang, X., Duffy, P., McMahon, S., Greiser, U., O Croinin, T., et al. (2021). Anti-fouling and anti-bacterial bioresorbable polymer coatings for metal surfaces of implantable medical devices. In Euromat 2021.  
Carney, G., Clyne, M., & Ó'Cróinín, T. (2021). Campylobacter strains isolated from supermarket chicken meat display higher levels of fluoroquinolone resistance which is associated with greater aerobic survival.. In Avian Infectious Diseases.  
Carney, G., Clyne, M., & Ó'Cróinín, T. (2022). Evidence of a link between fluoroquinolone resistance and aerobic growth in freshly isolated strains of campylobacter.. In Microbiology Society Annual Conference 2022.  
O'Gorman, E., Redwood, C., Clyne, M., & Ó'Cróinín, T. (2022). The Effects of Environmental Stresses on Campylobacter jejuni biofilm formation. In Microbiology Society Annual Conference 2022.  
Cai, F. -F., Spiekermann, F., Sarac, B., Zermeno-Perez, D., Greiser, U., Ó'Cróinín, T., & Eckert, J. (2022). Combining patterned Ti-based Bulk Metallic Glass and Biopolymer coating for Implant Applications. In Junior Euromat 2022.  
Dr Luisa Weiss
Kelliher, S., Macleod, H., Weiss, L., Szklanna, P. B., Gamba, S., Ni Ainle, F., et al. (2022). Characterisation of plasma extracellular vesicles in myeloproliferative neoplasms. In THROMBOSIS RESEARCH Vol. 213 (pp. S14-S15).  

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Journal article

Dr Olga Baron
Deneubourg, C., Ramm, M., Smith, L. J., Baron, O., Singh, K., Byrne, S. C., et al. (2022). The spectrum of neurodevelopmental, neuromuscular and neurodegenerative disorders due to defective autophagy. Autophagy, 18(3), 496-517. doi:10.1080/15548627.2021.1943177Available Online  
Professor Orina Belton
Coveney, S., Murphy, S., Belton, O., Cassidy, T., Crowe, M., Dolan, E., et al. (2022). Inflammatory cytokines, high-sensitivity C-reactive protein, and risk of one-year vascular events, death, and poor functional outcome after stroke and transient ischemic attack. International Journal of Stroke, 17(2), 163-171. doi:10.1177/1747493021995595Available Online  
Coveney, S., McCabe, J. J., Murphy, S., Belton, O., Gray, C., Cassidy, T., et al. (2022). Dose-Dependent Association of Inflammatory Cytokines with Carotid Atherosclerosis in Transient Ischaemic Attack: Implications for Clinical Trials. Cerebrovascular Diseases, 51(2), 178-187. doi:10.1159/000517739Available Online  
Strowitzki, M. J., Nelson, R., Garcia, M. P., Tuffs, C., Bleul, M. B., Fitzsimons, S., et al. (2022). Carbon Dioxide Sensing by Immune Cells Occurs through Carbonic Anhydrase 2_Dependent Changes in Intracellular pH. Journal of Immunology, 208(10), 2363-2375. doi:10.4049/jimmunol.2100665Available Online  
Assoc Professor Oliver Blacque
Moran, A. L., Carter, S. P., Kaylor, J. J., Jiang, Z., Broekman, S., Dillon, E. T., et al. (2022). Dawn and dusk peaks of outer segment phagocytosis, and visual cycle function require Rab28. FASEB Journal, 36(5). doi:10.1096/fj.202101897RAvailable Online  
Lange, K. I., Best, S., Tsiropoulou, S., Berry, I., Johnson, C. A., & Blacque, O. E. (2022). Interpreting ciliopathy-associated missense variants of uncertain significance (VUS) in Caenorhabditis elegans. Human molecular genetics, 31(10), 1574-1587. doi:10.1093/hmg/ddab344Available Online  
Dr Gary Brennan
van Vliet, E. A., Hildebrand, M. S., Mills, J. D., Brennan, G., Eid, T., Masino, S. A., et al. (2022). A companion to the preclinical common data elements for genomics, transcriptomics, and epigenomics data in rodent epilepsy models. A report of the TASK3-WG4 omics working group of the ILAE/AES joint translational TASK force. Epilepsia Open. doi:10.1002/epi4.12640Available Online  
Professor Geraldine Butler
Ryan, A., Cinnéide, E., Bergin, S. A., Alhajeri, G., Almotawaa, H., Daly, I., et al. (2021). Draft genome sequence of a diploid and hybrid candida strain, Candida sanyaensis UCD423, isolated from compost in Ireland. Microbiology Resource Announcements, 10(38). doi:10.1128/MRA.00761-21Available Online  
Butler, G., Heitman, J., Idnurm, A., & James, T. Y. (2021). On a Special Collection in MMBR on Sex in Fungi: Molecular Mechanisms and Evolutionary Implications. Microbiology and Molecular Biology Reviews, 85(3). doi:10.1128/MMBR.00094-21Available Online  
Cinnéide, E., Jones, M., Bahate, E., Boyd, E., Clavero, R., Doherty, H., et al. (2021). Draft genome sequence of the yeast ogataea degrootiae strain UCD465, isolated from soil in Ireland. Microbiology Resource Announcements, 10(39). doi:10.1128/MRA.00736-21Available Online  
Cavalheiro, M., Pereira, D., Formosa-Dague, C., Leitão, C., Pais, P., Ndlovu, E., et al. (2021). From the first touch to biofilm establishment by the human pathogen Candida glabrata: a genome-wide to nanoscale view. Communications Biology, 4(1). doi:10.1038/s42003-021-02412-7Available Online  
Hartuis, S., Robert, E., Lombardi, L., Butler, G., Le Pape, P., & Morio, F. (2021). Precise editing using CRISPR-Cas9 to explore the contribution of clinically-derived mutations to antifungal resistance in the pathogenic yeast Candida parapsilosis. Access Microbiology, 3(12). doi:10.1099/acmi.cc2021.po0176Available Online  
Lombardi, L., & Butler, G. (2022). Plasmid-Based CRISPR–Cas9 Editing in Multiple Candida Species. Unknown Journal, 2542, 13-40. doi:10.1007/978-1-0716-2549-1_2Available Online  
Pais, P., Galocha, M., Califórnia, R., Viana, R., Ola, M., Okamoto, M., et al. (2022). Characterization of the Candida glabrata Transcription Factor CgMar1: Role in Azole Susceptibility. Journal of Fungi, 8(1). doi:10.3390/jof8010061Available Online  
Branco, J., Ryan, A. P., Pinto e Silva, A., Butler, G., Miranda, I. M., & Rodrigues, A. G. (2022). Clinical azole cross-resistance in Candida parapsilosis is related to a novel MRR1 gain-of-function mutation. Clinical Microbiology and Infection. doi:10.1016/j.cmi.2022.08.014Available Online  
Daneshnia, F., de Almeida Júnior, J. N., Arastehfar, A., Lombardi, L., Shor, E., Moreno, L., et al. (2022). Determinants of fluconazole resistance and echinocandin tolerance in C. parapsilosis isolates causing a large clonal candidemia outbreak among COVID-19 patients in a Brazilian ICU. Emerging Microbes and Infections, 11(1), 2264-2274. doi:10.1080/22221751.2022.2117093Available Online  
O’Brien, C. E., Zhai, B., Ola, M., Bergin, S. A., Cinnéide, E., O’Connor, Í., et al. (2022). Identification of a novel Candida metapsilosis isolate reveals multiple hybridization events. G3: Genes, Genomes, Genetics, 12(1). doi:10.1093/G3JOURNAL/JKAB367Available Online  
Wolfe, K. H., & Butler, G. (2022). Mating-Type Switching in Budding Yeasts, from Flip/Flop Inversion to Cassette Mechanisms. Microbiology and Molecular Biology Reviews, 86(2). doi:10.1128/mmbr.00007-21Available Online  
Dr Annette Therese Byrne
Lafferty, A., O'Farrell, A. C., Migliardi, G., Khemka, N., Lindner, A. U., Sassi, F., et al. (2021). Molecular subtyping combined with biological pathway analyses to study regorafenib response in clinically relevant mouse models of colorectal cancer. Clinical Cancer Research, 27(21), 5979-5992. doi:10.1158/1078-0432.CCR-21-0818Available Online  
Netufo, O., Connor, K., Shiels, L. P., Sweeney, K. J., Wu, D., O’shea, D. F., et al. (2022). Refining Glioblastoma Surgery through the Use of Intra-Operative Fluorescence Imaging Agents. Pharmaceuticals, 15(5). doi:10.3390/ph15050550Available Online  
Varn, F. S., Johnson, K. C., Martinek, J., Huse, J. T., Nasrallah, M. P., Wesseling, P., et al. (2022). Glioma progression is shaped by genetic evolution and microenvironment interactions. Cell, 185(12), 2184-2199.e16. doi:10.1016/j.cell.2022.04.038Available Online  
Dr Patrick Caffrey
Caffrey, P., Hogan, M., & Song, Y. (2022). New Glycosylated Polyene Macrolides: Refining the Ore from Genome Mining. Antibiotics, 11(3). doi:10.3390/antibiotics11030334Available Online  
Amaya, J. A., Lamb, D. C., Kelly, S. L., Caffrey, P., Murarka, V. C., & Poulos, T. L. (2022). Structural analysis of P450 AmphL from Streptomyces nodosus provides insights into substrate selectivity of polyene macrolide antibiotic biosynthetic P450s. Journal of Biological Chemistry, 298(4). doi:10.1016/j.jbc.2022.101746Available Online  
Assoc Professor Gerard Cagney
Heurich, M., Föcking, M., Mongan, D., Cagney, G., & Cotter, D. R. (2022). Dysregulation of complement and coagulation pathways: emerging mechanisms in the development of psychosis. Molecular Psychiatry, 27(1), 127-140. doi:10.1038/s41380-021-01197-9Available Online  
Davis, J. L., Kennedy, C., Clerkin, S., Treacy, N., Andrews, D., Dodd, T., et al. (2022). Integrated single cell RNA-seq and ATAC-seq of iPSC-derived kidney organoids reveals the complexity of TGFß signalling to chromatin during the origin of fibroblasts. FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 36. doi:10.1096/fasebj.2022.36.S1.R2854Available Online  
Susai, S. R., Mongan, D., Healy, C., Cannon, M., Cagney, G., Wynne, K., et al. (2022). Machine learning based prediction and the influence of complement – Coagulation pathway proteins on clinical outcome: Results from the NEURAPRO trial. Brain, Behavior, and Immunity, 103, 50-60. doi:10.1016/j.bbi.2022.03.013Available Online  
Zhang, W., Li, J., Silveira, C. P., Cai, Q., Dawson, K. A., Cagney, G., & Yan, Y. (2022). Nanoscale shape-dependent histone modifications. PNAS Nexus, 1(4). doi:10.1093/pnasnexus/pgac172Available Online  
Dr Hilary Cassidy
Royds, J., Cassidy, H., Conroy, M. J., Dunne, M. R., Matallanas, D., Lysaght, J., & McCrory, C. (2021). An Investigation into Proteomic Constituents of Cerebrospinal Fluid in Patients with Chronic Peripheral Neuropathic Pain Medicated with Opioids- a Pilot Study. Journal of Neuroimmune Pharmacology, 16(3), 634-650. doi:10.1007/s11481-020-09970-3Available Online  
Gaspar, V. I., McCaul, J., Cassidy, H., Slattery, C., & McMorrow, T. (2021). Effects of curcumin analogues dmc and ef24 in combination with the cytokine trail against kidney cancer. Molecules, 26(20). doi:10.3390/molecules26206302Available Online  
Dr Eric Conway
Conway, E., Rossi, F., Fernandez-Perez, D., Ponzo, E., Ferrari, K. J., Zanotti, M., et al. (2021). BAP1 enhances Polycomb repression by counteracting widespread H2AK119ub1 deposition and chromatin condensation. Molecular Cell, 81(17), 3526-3541.e8. doi:10.1016/j.molcel.2021.06.020Available Online  
Tamburri, S., Conway, E., & Pasini, D. (2022). Polycomb-dependent histone H2A ubiquitination links developmental disorders with cancer. Trends in Genetics, 38(4), 333-352. doi:10.1016/j.tig.2021.07.011Available Online  
Doyle, E. J., Morey, L., & Conway, E. (2022). Know when to fold ‘em: Polycomb complexes in oncogenic 3D genome regulation. Frontiers in Cell and Developmental Biology, 10. doi:10.3389/fcell.2022.986319Available Online  
Dr Derek Costello
Howe, A. M., Burke, S., O’Reilly, M. E., McGillicuddy, F. C., & Costello, D. A. (2022). Palmitic Acid and Oleic Acid Differently Modulate TLR2-Mediated Inflammatory Responses in Microglia and Macrophages. Molecular Neurobiology, 59(4), 2348-2362. doi:10.1007/s12035-022-02756-zAvailable Online  
Assoc Professor John Crean
Strachan, E. L., Mac White-Begg, D., Crean, J., Reynolds, A. L., Kennedy, B. N., & O’Sullivan, N. C. (2021). The Role of Mitochondria in Optic Atrophy With Autosomal Inheritance. Frontiers in Neuroscience, 15. doi:10.3389/fnins.2021.784987Available Online  
Treacy, N. J., Clerkin, S., Davis, J. L., Kennedy, C., Miller, A. F., Saiani, A., et al. (2022). Growth and differentiation of human induced pluripotent stem cell (hiPSC)-derived kidney organoids using fully synthetic peptide hydrogels. Bioactive Materials, 21, 142-156. doi:10.1016/j.bioactmat.2022.08.003Available Online  
Davis, J. L., Kennedy, C., Clerkin, S., Treacy, N., Andrews, D., Dodd, T., et al. (2022). Integrated single cell RNA-seq and ATAC-seq of iPSC-derived kidney organoids reveals the complexity of TGFß signalling to chromatin during the origin of fibroblasts. FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 36. doi:10.1096/fasebj.2022.36.S1.R2854Available Online  
Clerkin, S., Wychowaniec, J. K., Singh, K., Davis, J. L., Treacy, N. J., Krupa, I., et al. (2022). Gelatin Methacryloyl (GelMA) as a Suitable Three-Dimensional Extracellular Environment for the Derivation of hiPSC-Derived Kidney Organoids. FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 36. doi:10.1096/fasebj.2022.36.S1.R3064Available Online  
Treacy, N. J., Clerkin, S., Davis, J. L., Kennedy, C., Miller, A. F., Saiani, A., et al. (2023). Growth and differentiation of human induced pluripotent stem cell (hiPSC)-derived kidney organoids using fully synthetic peptide hydrogels.. Bioactive materials, 21, 142-156. doi:10.1016/j.bioactmat.2022.08.003Available Online  
Dr Monica De Gaetano
Coveney, S., Murphy, S., Belton, O., Cassidy, T., Crowe, M., Dolan, E., et al. (2022). Inflammatory cytokines, high-sensitivity C-reactive protein, and risk of one-year vascular events, death, and poor functional outcome after stroke and transient ischemic attack. International Journal of Stroke, 17(2), 163-171. doi:10.1177/1747493021995595Available Online  
Coveney, S., McCabe, J. J., Murphy, S., Belton, O., Gray, C., Cassidy, T., et al. (2022). Dose-Dependent Association of Inflammatory Cytokines with Carotid Atherosclerosis in Transient Ischaemic Attack: Implications for Clinical Trials. Cerebrovascular Diseases, 51(2), 178-187. doi:10.1159/000517739Available Online  
Owen, B., De Gaetano, M., Gaffney, A., Godson, C., & Guiry, P. J. (2022). Synthesis and Biological Evaluation of Bicyclo[1.1.1]pentane-Containing Aromatic Lipoxin A<inf>4</inf>Analogues. Organic Letters, 24(32), 6049-6053. doi:10.1021/acs.orglett.2c02345Available Online  
Ms Joanna Drabinska
Drabinska, J., Steczkiewicz, K., Kujawa, M., & Kraszewska, E. (2021). Searching for Biological Function of the Mysterious PA2504 Protein from Pseudomonas aeruginosa. . International journal of molecular sciences, 22(18), 9833. doi:10.3390/ijms22189833Available Online  
Professor William Gallagher
Bolado-Carrancio, A., Lee, M., Ewing, A., Muir, M., Macleod, K. G., Gallagher, W. M., et al. (2021). ISGylation drives basal breast tumour progression by promoting EGFR recycling and Akt signalling. Oncogene, 40(44), 6235-6247. doi:10.1038/s41388-021-02017-8Available Online  
Filipits, M., Rudas, M., Kainz, V., Singer, C. F., Fitzal, F., Bago-Horvath, Z., et al. (2021). The OncoMasTR test predicts distant recurrence in estrogen receptor-positive, HER2-negative early-stage breast cancer: A validation study in ABCSG trial 8. Clinical Cancer Research, 27(21), 5931-5938. doi:10.1158/1078-0432.CCR-21-1023Available Online  
Genua, F., Mirkovic, B., Mullee, A., Levy, M., Gallagher, W. M., Vodicka, P., & Hughes, D. J. (2021). Association of circulating short chain fatty acid levels with colorectal adenomas and colorectal cancer. Clinical Nutrition ESPEN, 46, 297-304. doi:10.1016/j.clnesp.2021.09.740Available Online  
Silva, R., Moran, B., Baird, A. M., O’Rourke, C. J., Finn, S. P., McDermott, R., et al. (2021). Longitudinal analysis of individual cfDNA methylome patterns in metastatic prostate cancer. Clinical Epigenetics, 13(1). doi:10.1186/s13148-021-01155-wAvailable Online  
Sinclair, P., Wilkinson, M., Conroy, E., Downey, P., Gallagher, W., Docherty, N., et al. (2021). O-B04 The effect of high fat diet and subsequent intentional weight loss on tumour burden in an animal model of spontaneous endometrial cancer. British Journal of Surgery, 108(Supplement_9). doi:10.1093/bjs/znab429.003Available Online  
Azam, H., Pierro, L., Reina, M., Gallagher, W. M., & Prencipe, M. (2022). Emerging role for the Serum Response Factor (SRF) as a potential therapeutic target in cancer. Expert Opinion on Therapeutic Targets, 26(2), 155-169. doi:10.1080/14728222.2022.2032652Available Online  
Olsson Hau, S., Wahlin, S., Cervin, S., Falk, V., Nodin, B., Elebro, J., et al. (2022). PRR11 unveiled as a top candidate biomarker within the RBM3-regulated transcriptome in pancreatic cancer. Journal of Pathology: Clinical Research, 8(1), 65-77. doi:10.1002/cjp2.238Available Online  
Horgan, D., Curigliano, G., Rieß, O., Hofman, P., Büttner, R., Conte, P., et al. (2022). Identifying the Steps Required to Effectively Implement Next-Generation Sequencing in Oncology at a National Level in Europe. Journal of Personalized Medicine, 12(1). doi:10.3390/jpm12010072Available Online  
Ward, E., Blümel, A., Conroy, E., Cremin, G., Gao, B., Gallagher, W., et al. (2022). Abstract PD14-07: Bromodomain and Extra-Terminal motif (BET) inhibitors are a rational therapeutic choice for treatment of invasive lobular carcinoma. Cancer Research, 82(4_Supplement). doi:10.1158/1538-7445.sabcs21-pd14-07Available Online  
Lucas, M. W., Kinsella, Z., Gonzalez, C., Hurley, C., Blümel, A., O'Grady, T., et al. (2022). 38P Tumour-infiltrating lymphocytes and correlation with prognostic signature scores in early-stage hormone-positive, HER2-negative (ER+/HER2-) breast cancer. Annals of Oncology, 33, S140. doi:10.1016/j.annonc.2022.03.053Available Online  
O'Reilly, E. M., Cosgrave, J. M., Gallagher, W. M., & Perry, A. S. (2022). Plant-derived cannabinoids as anticancer agents. Trends in Cancer, 8(5), 350-357. doi:10.1016/j.trecan.2022.01.017Available Online  
Lucas, M., Kinsella, Z., Gonzalez, C. A., Hurley, C., Blümel, A., Fay, J., et al. (2022). CD45-positive tumor infiltrating lymphocytes in early-stage hormone-positive, HER2-negative (ER+/HER2-) breast cancer: Correlation with proliferation and prognostic signature scores.. Journal of Clinical Oncology, 40(16_suppl), e12555. doi:10.1200/jco.2022.40.16_suppl.e12555Available Online  
Loughman, T., Barron, S., Wang, C. J. A., Dynoodt, P., Fender, B., Lopez-Ruiz, C., et al. (2022). Analytical Validation of a Novel 6-Gene Signature for Prediction of Distant Recurrence in Estrogen Receptor-Positive, HER2-Negative, Early-Stage Breast Cancer. Clinical Chemistry, 68(6), 837-847. doi:10.1093/clinchem/hvac028Available Online  
Brennan, D. J., O’Connor, D. P., Rexhepaj, E., Ponten, F., & Gallagher, W. M. (2022). Author Correction: Antibody-based proteomics: fast-tracking molecular diagnostics in oncology (Nature Reviews Cancer, (2010), 10, 9, (605-617), 10.1038/nrc2902). Nature Reviews Cancer, 22(6), 373. doi:10.1038/s41568-022-00471-4Available Online  
Dr Jana Haase
Haase, J., Jones, A. K. C., Mc Veigh, C. J., Brown, E., Clarke, G., & Ahnert-Hilger, G. (2021). Sex and brain region-specific regulation of serotonin transporter activity in synaptosomes in guanine nucleotide-binding protein G(q) alpha knockout mice. Journal of Neurochemistry, 159(1), 156-171. doi:10.1111/jnc.15482Available Online  
Kalinichenko, L. S., Mühle, C., Jia, T., Anderheiden, F., Datz, M., Eberle, A. L., et al. (2021). Neutral sphingomyelinase mediates the co-morbidity trias of alcohol abuse, major depression and bone defects. Molecular Psychiatry, 26(12), 7403-7416. doi:10.1038/s41380-021-01304-wAvailable Online  
Kalinichenko, L. S., Mühle, C., Jia, T., Anderheiden, F., Datz, M., Eberle, A. -L., et al. (2022). Adult alcohol drinking and emotional tone are mediated by neutral sphingomyelinase during development in males. . Cerebral cortex (New York, N.Y. : 1991), bhac106. doi:10.1093/cercor/bhac106Available Online  
Assoc Professor Chandralal Hewage
Timmons, P. B., & Hewage, C. M. (2021). ENNAVIA is a novel method which employs neural networks for antiviral and anti-coronavirus activity prediction for therapeutic peptides. Briefings in bioinformatics, 22(6). doi:10.1093/bib/bbab258Available Online  
Timmons, P. B., & Hewage, C. M. (2021). APPTEST is a novel protocol for the automatic prediction of peptide tertiary structures. Briefings in bioinformatics, 22(6). doi:10.1093/bib/bbab308Available Online  
Timmons, P. B., & Hewage, C. M. (2021). Conformation and membrane interaction studies of the potent antimicrobial and anticancer peptide palustrin-Ca. Scientific Reports, 11(1). doi:10.1038/s41598-021-01769-3Available Online  
Timmons, P. B., & Hewage, C. M. (2022). Biophysical study of the structure and dynamics of the antimicrobial peptide maximin 1. Journal of Peptide Science, 28(2). doi:10.1002/psc.3370Available Online  
Dr David Hughes
Aglago, E. K., Mayén, A. L., Knaze, V., Freisling, H., Fedirko, V., Hughes, D. J., et al. (2021). Dietary advanced glycation end-products and colorectal cancer risk in the European prospective investigation into cancer and nutrition (EPIC) study. Nutrients, 13(9). doi:10.3390/nu13093132Available Online  
Baker, J. R., Umesh, S., Jenab, M., Schomburg, L., Tjønneland, A., Olsen, A., et al. (2021). Prediagnostic blood selenium status and mortality among patients with colorectal cancer in western european populations. Biomedicines, 9(11). doi:10.3390/biomedicines9111521Available Online  
Mao, Z., Aglago, E. K., Zhao, Z., Schalkwijk, C., Jiao, L., Freisling, H., et al. (2021). Dietary intake of advanced glycation end products (Ages) and mortality among individuals with colorectal cancer. Nutrients, 13(12). doi:10.3390/nu13124435Available Online  
Genua, F., Mirkovic, B., Mullee, A., Levy, M., Gallagher, W. M., Vodicka, P., & Hughes, D. J. (2021). Association of circulating short chain fatty acid levels with colorectal adenomas and colorectal cancer. Clinical Nutrition ESPEN, 46, 297-304. doi:10.1016/j.clnesp.2021.09.740Available Online  
Daniel, N., Bouras, E., Tsilidis, K. K., & Hughes, D. J. (2022). Genetically Predicted Circulating Concentrations of Micronutrients and COVID-19 Susceptibility and Severity: A Mendelian Randomization Study. Frontiers in Nutrition, 9. doi:10.3389/fnut.2022.842315Available Online  
Rothwell, J. A., Murphy, N., Beševic, J., Kliemann, N., Jenab, M., Ferrari, P., et al. (2022). Metabolic Signatures of Healthy Lifestyle Patterns and Colorectal Cancer Risk in a European Cohort. Clinical Gastroenterology and Hepatology, 20(5), e1061-e1082. doi:10.1016/j.cgh.2020.11.045Available Online  
Mukhtar, M., Ashfield, N., Vodickova, L., Vymetalkova, V., Levy, M., Liska, V., et al. (2022). The Associations of Selenoprotein Genetic Variants with the Risks of Colorectal Adenoma and Colorectal Cancer: Case–Control Studies in Irish and Czech Populations. Nutrients, 14(13). doi:10.3390/nu14132718Available Online  
Professor Breandán Kennedy
Strachan, E. L., Mac White-Begg, D., Crean, J., Reynolds, A. L., Kennedy, B. N., & O’Sullivan, N. C. (2021). The Role of Mitochondria in Optic Atrophy With Autosomal Inheritance. Frontiers in Neuroscience, 15. doi:10.3389/fnins.2021.784987Available Online  
Mahon, N., Slater, K., O'brien, J., Alvarez, Y., Reynolds, A., & Kennedy, B. (2022). Discovery and Development of the Quininib Series of Ocular Drugs. Journal of Ocular Pharmacology and Therapeutics, 38(1), 33-42. doi:10.1089/jop.2021.0074Available Online  
Sundaramurthi, H., García-Mulero, S., Tonelotto, V., Slater, K., Marcone, S., Piulats, J. M., et al. (2022). Uveal Melanoma Cell Line Proliferation Is Inhibited by Ricolinostat, a Histone Deacetylase Inhibitor. Cancers, 14(3). doi:10.3390/cancers14030782Available Online  
Moran, A. L., Carter, S. P., Kaylor, J. J., Jiang, Z., Broekman, S., Dillon, E. T., et al. (2022). Dawn and dusk peaks of outer segment phagocytosis, and visual cycle function require Rab28. FASEB Journal, 36(5). doi:10.1096/fj.202101897RAvailable Online  
Sundaramurthi, H., Giricz, Z., & Kennedy, B. N. (2022). Evaluation of the Therapeutic Potential of Histone Deacetylase 6 Inhibitors for Primary and Metastatic Uveal Melanoma. International Journal of Molecular Sciences, 23(16). doi:10.3390/ijms23169378Available Online  
Dr Mohd Faheem Khan
Khan, M. F., & Murphy, C. D. (2021). Bacterial degradation of the anti-depressant drug fluoxetine produces trifluoroacetic acid and fluoride ion. Applied Microbiology and Biotechnology, 105(24), 9359-9369. doi:10.1007/s00253-021-11675-3Available Online  
Khan, M. F., Saleem, D., & Murphy, C. D. (2021). Regulation of Cunninghamella spp. biofilm growth by tryptophol and tyrosol. Biofilm, 3. doi:10.1016/j.bioflm.2021.100046Available Online  
Khan, M. F., & Murphy, C. D. (2021). Cunninghamella spp. produce mammalian-equivalent metabolites from fluorinated pyrethroid pesticides. AMB Express, 11(1). doi:10.1186/s13568-021-01262-0Available Online  
Reynolds, L. J., Sala-Comorera, L., Khan, M. F., Martin, N. A., Whitty, M., Stephens, J. H., et al. (2022). Coprostanol as a Population Biomarker for SARS-CoV-2 Wastewater Surveillance Studies. Water (Switzerland), 14(2). doi:10.3390/w14020225Available Online  
Reynolds, L., Sala-Comorera, L., Khan, M., Martin, N., Whitty, M., Stephens, J., et al. (2022). Coprostanol as a Population Biomarker for SARS-CoV-2 Wastewater Surveillance Studies. Water. doi:10.3390/w14020225Available Online  
Khan, M. F., & Murphy, C. D. (2022). Nitroreduction of flutamide by Cunninghamella elegans NADPH: Cytochrome P450 reductase. Biochemistry and Biophysics Reports, 29. doi:10.1016/j.bbrep.2022.101209Available Online  
Ms Ana Le Chevillier
Comer, S. P., Le Chevillier, A., Szklanna, P. B., Kelliher, S., Saeed, K., Cullen, S., et al. (2022). Case Report: Hypergranular Platelets in Vaccine-Induced Thrombotic Thrombocytopenia After ChAdOx1 nCov-19 Vaccination. Frontiers in Cardiovascular Medicine, 9. doi:10.3389/fcvm.2022.824601Available Online  
Kelliher, S., Weiss, L., Cullivan, S., O’Rourke, E., Murphy, C. A., Toolan, S., et al. (2022). Non-severe COVID-19 is associated with endothelial damage and hypercoagulability despite pharmacological thromboprophylaxis. Journal of Thrombosis and Haemostasis, 20(4), 1008-1014. doi:10.1111/jth.15660Available Online  
Dr Lisa Lombardi
Lombardi, L., & Butler, G. (2022). Plasmid-Based CRISPR–Cas9 Editing in Multiple Candida Species. Unknown Journal, 2542, 13-40. doi:10.1007/978-1-0716-2549-1_2Available Online  
Daneshnia, F., de Almeida Júnior, J. N., Arastehfar, A., Lombardi, L., Shor, E., Moreno, L., et al. (2022). Determinants of fluconazole resistance and echinocandin tolerance in C. parapsilosis isolates causing a large clonal candidemia outbreak among COVID-19 patients in a Brazilian ICU. Emerging Microbes and Infections, 11(1), 2264-2274. doi:10.1080/22221751.2022.2117093Available Online  
Professor Patricia Maguire
Weiss, L., Keaney, J., Szklanna, P. B., Prendiville, T., Uhrig, W., Wynne, K., et al. (2021). Nonvalvular atrial fibrillation patients anticoagulated with rivaroxaban compared with warfarin exhibit reduced circulating extracellular vesicles with attenuated pro-inflammatory protein signatures. Journal of Thrombosis and Haemostasis, 19(10), 2583-2595. doi:10.1111/jth.15434Available Online  
Murphy, C. A., O'Reilly, D. P., Edebiri, O., Weiss, L., Cullivan, S., EL-Khuffash, A., et al. (2021). Haematological parameters and coagulation in umbilical cord blood following COVID-19 infection in pregnancy. European Journal of Obstetrics and Gynecology and Reproductive Biology, 266, 99-105. doi:10.1016/j.ejogrb.2021.09.019Available Online  
Twomey, L., Navasiolava, N., Robin, A., Bareille, M. P., Gauquelin-Koch, G., Beck, A., et al. (2021). A dry immersion model of microgravity modulates platelet phenotype, miRNA signature, and circulating plasma protein biomarker profile. Scientific Reports, 11(1). doi:10.1038/s41598-021-01335-xAvailable Online  
O’Reilly, D., Murphy, C. A., Drew, R., El-Khuffash, A., Maguire, P. B., Ainle, F. N., & Mc Callion, N. (2022). Platelets in pediatric and neonatal sepsis: novel mediators of the inflammatory cascade. Pediatric Research, 91(2), 359-367. doi:10.1038/s41390-021-01715-zAvailable Online  
Murphy, C. A., Neary, E., O’Reilly, D. P., Cullivan, S., EL-Khuffash, A., NíAinle, F., et al. (2022). The role of the calibrated automated thrombogram in neonates: describing mechanisms of neonatal haemostasis and evaluating haemostatic drugs. European Journal of Pediatrics, 181(1), 23-33. doi:10.1007/s00431-021-04196-8Available Online  
Comer, S. P., Le Chevillier, A., Szklanna, P. B., Kelliher, S., Saeed, K., Cullen, S., et al. (2022). Case Report: Hypergranular Platelets in Vaccine-Induced Thrombotic Thrombocytopenia After ChAdOx1 nCov-19 Vaccination. Frontiers in Cardiovascular Medicine, 9. doi:10.3389/fcvm.2022.824601Available Online  
Kelliher, S., Weiss, L., Cullivan, S., O’Rourke, E., Murphy, C. A., Toolan, S., et al. (2022). Non-severe COVID-19 is associated with endothelial damage and hypercoagulability despite pharmacological thromboprophylaxis. Journal of Thrombosis and Haemostasis, 20(4), 1008-1014. doi:10.1111/jth.15660Available Online  
Dr Mario Manresa
Manresa, M. C., Wu, A., Nhu, Q. M., Chiang, A. W. T., Okamoto, K., Miki, H., et al. (2022). LIGHT controls distinct homeostatic and inflammatory gene expression profiles in esophageal fibroblasts via differential HVEM and LTßR-mediated mechanisms.. Mucosal immunology, 15(2), 327-337. doi:10.1038/s41385-021-00472-wAvailable Online  
Assoc Professor Siobhán McClean
Tomás-Cortázar, J., Bossi, L., Quinn, C., Reynolds, C. J., Butler, D. K., Corcoran, N., et al. (2021). BpOmpW Antigen Stimulates the Necessary Protective T-Cell Responses Against Melioidosis. Frontiers in Immunology, 12. doi:10.3389/fimmu.2021.767359Available Online  
Dennehy, R., Duggan, N., Dignam, S., McCormack, S., Dillon, E., Molony, J., et al. (2022). Protein with negative surface charge distribution, Bnr1, shows characteristics of a DNA-mimic protein and may be involved in the adaptation of Burkholderia cenocepacia. MicrobiologyOpen, 11(1). doi:10.1002/mbo3.1264Available Online  
Assoc Professor Margaret McGee
Kulka, M., Brennan, K., & Mc Gee, M. (2022). Investigation of canine extracellular vesicles in diffuse large B-cell lymphomas.. PloS one, 17(9), e0274261. doi:10.1371/journal.pone.0274261Available Online  
Assoc Professor Tara McMorrow
Gaspar, V. I., McCaul, J., Cassidy, H., Slattery, C., & McMorrow, T. (2021). Effects of curcumin analogues dmc and ef24 in combination with the cytokine trail against kidney cancer. Molecules, 26(20). doi:10.3390/molecules26206302Available Online  
Professor Wim Meijer
Sala-Comorera, L., Reynolds, L. J., Martin, N. A., Pascual-Benito, M., Stephens, J. H., Nolan, T. M., et al. (2021). crAssphage as a human molecular marker to evaluate temporal and spatial variability in faecal contamination of urban marine bathing waters. Science of the Total Environment, 789. doi:10.1016/j.scitotenv.2021.147828Available Online  
Reynolds, L. J., Sala-Comorera, L., Khan, M. F., Martin, N. A., Whitty, M., Stephens, J. H., et al. (2022). Coprostanol as a Population Biomarker for SARS-CoV-2 Wastewater Surveillance Studies. Water (Switzerland), 14(2). doi:10.3390/w14020225Available Online  
Ahmed, W., Simpson, S. L., Bertsch, P. M., Bibby, K., Bivins, A., Blackall, L. L., et al. (2022). Minimizing errors in RT-PCR detection and quantification of SARS-CoV-2 RNA for wastewater surveillance. Science of the Total Environment, 805. doi:10.1016/j.scitotenv.2021.149877Available Online  

Dr Steven Middleton
Guan, H., Middleton, S. J., Inoue, T., & McHugh, T. J. (2021). Lateralization of CA1 assemblies in the absence of CA3 input. Nature Communications, 12(1). doi:10.1038/s41467-021-26389-3Available Online  
Dr Jennifer Mitchell
Mirghani, R., Saba, T., Khaliq, H., Mitchell, J., Do, L., Chambi, L., et al. (2022). Biofilms: Formation, drug resistance and alternatives to conventional approaches. AIMS Microbiology, 8(3), 240-278. doi:10.3934/microbiol.2022019Available Online  
Drumm, S. D., Cormican, P., O'Boyle, P., Owens, R. A., Mitchell, J., & Keane, O. M. (2022). Immunoproteomic analysis of the secretome of bovine-adapted strains of Staphylococcus aureus demonstrates a strain-specific humoral response. Veterinary Immunology and Immunopathology, 249. doi:10.1016/j.vetimm.2022.110428Available Online  
Professor Cormac Murphy
Murphy, C. D. (2021). Engineering microorganisms to generate fluorinated platform chemicals. Chem Catalysis, 1(6), 1150-1152. doi:10.1016/j.checat.2021.10.017Available Online  
Khan, M. F., & Murphy, C. D. (2021). Bacterial degradation of the anti-depressant drug fluoxetine produces trifluoroacetic acid and fluoride ion. Applied Microbiology and Biotechnology, 105(24), 9359-9369. doi:10.1007/s00253-021-11675-3Available Online  
Khan, M. F., Saleem, D., & Murphy, C. D. (2021). Regulation of Cunninghamella spp. biofilm growth by tryptophol and tyrosol. Biofilm, 3. doi:10.1016/j.bioflm.2021.100046Available Online  
Khan, M. F., & Murphy, C. D. (2021). Cunninghamella spp. produce mammalian-equivalent metabolites from fluorinated pyrethroid pesticides. AMB Express, 11(1). doi:10.1186/s13568-021-01262-0Available Online  
Reynolds, L. J., Sala-Comorera, L., Khan, M. F., Martin, N. A., Whitty, M., Stephens, J. H., et al. (2022). Coprostanol as a Population Biomarker for SARS-CoV-2 Wastewater Surveillance Studies. Water (Switzerland), 14(2). doi:10.3390/w14020225Available Online  
Reynolds, L., Sala-Comorera, L., Khan, M., Martin, N., Whitty, M., Stephens, J., et al. (2022). Coprostanol as a Population Biomarker for SARS-CoV-2 Wastewater Surveillance Studies. Water. doi:10.3390/w14020225Available Online  
Khan, M. F., & Murphy, C. D. (2022). Nitroreduction of flutamide by Cunninghamella elegans NADPH: Cytochrome P450 reductase. Biochemistry and Biophysics Reports, 29. doi:10.1016/j.bbrep.2022.101209Available Online  
Professor Keith Murphy
Harford, J., & Murphy, K. J. (2022). Leading in the academy: women science professors at university college Dublin in the 1960s. Paedagogica Historica. doi:10.1080/00309230.2022.2028872Available Online  
Dr Tanja Narancic
Narancic, T., Salvador, M., Hughes, G. M., Beagan, N., Abdulmutalib, U., Kenny, S. T., et al. (2021). Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates. Microbial Biotechnology, 14(6), 2463-2480. doi:10.1111/1751-7915.13712Available Online  
Ballerstedt, H., Tiso, T., Wierckx, N., Wei, R., Averous, L., Bornscheuer, U., et al. (2021). MIXed plastics biodegradation and UPcycling using microbial communities: EU Horizon 2020 project MIX-UP started January 2020. Environmental Sciences Europe, 33(1). doi:10.1186/s12302-021-00536-5Available Online  
Liu, S., Narancic, T., Davis, C., & O’Connor, K. E. (2022). CRISPR-Cas9 Editing of the Synthesis of Biodegradable Polyesters Polyhydroxyalkanaotes (PHA) in Pseudomonas putida KT2440. Unknown Journal, 2397, 341-358. doi:10.1007/978-1-0716-1826-4_17Available Online  
Dr Seema Nathwani
Malebari, A. M., Wang, S., Greene, T. F., O'Boyle, N. M., Fayne, D., Khan, M. F., et al. (2021). Synthesis and Antiproliferative Evaluation of 3-Chloroazetidin-2-ones with Antimitotic Activity: Heterocyclic Bridged Analogues of Combretastatin A-4. . Pharmaceuticals (Basel, Switzerland), 14(11), 1119. doi:10.3390/ph14111119Available Online  
Campiani, G., Khan, T., Ulivieri, C., Staiano, L., Papulino, C., Magnano, S., et al. (2022). Design and synthesis of multifunctional microtubule targeting agents endowed with dual pro-apoptotic and anti-autophagic efficacy.. European journal of medicinal chemistry, 235, 114274. doi:10.1016/j.ejmech.2022.114274Available Online  
Assoc Professor Peadar Ó Gaora
Macori, G., Nguyen, S. V., Naithani, A., Hurley, D., Bai, L., Garch, F. E., et al. (2021). Characterisation of early positive mcr-1 resistance gene and plasmidome in escherichia coli pathogenic strains associated with variable phylogroups under colistin selection. Antibiotics, 10(9). doi:10.3390/antibiotics10091041Available Online  
Assoc Professor David O'Connell
Pajenda, S., Zawedde, F., Kapps, S., Wagner, L., Schmidt, A., Winnicki, W., et al. (2021). Urinary C3 levels associated with sepsis and acute kidney injury-A pilot study.. PloS one, 16(11), e0259777. doi:10.1371/journal.pone.0259777Available Online  
Lynch, C. D., & O’Connell, D. J. (2022). Conversion of mammalian cell culture media waste to microbial fermentation feed efficiently supports production of recombinant protein by Escherichia coli. PLoS ONE, 17(5 May). doi:10.1371/journal.pone.0266921Available Online  
Linse, S., Sormanni, P., & O'Connell, D. J. (2022). An aggregation inhibitor specific to oligomeric intermediates of Aß42 derived from phage display libraries of stable, small proteins.. Proceedings of the National Academy of Sciences of the United States of America, 119(21), e2121966119. doi:10.1073/pnas.2121966119Available Online  
Professor John O'Connor
Puzio, M., Moreton, N., & O'Connor, J. J. (2022). Neuroprotective strategies for acute ischemic stroke: Targeting oxidative stress and prolyl hydroxylase domain inhibition in synaptic signalling. Brain Disorders, 5, 100030. doi:10.1016/j.dscb.2022.100030Available Online  
Professor Kevin O'Connor
Ackermann, Y. S., Li, W. J., Op de Hipt, L., Niehoff, P. J., Casey, W., Polen, T., et al. (2021). Engineering adipic acid metabolism in Pseudomonas putida. Metabolic Engineering, 67, 29-40. doi:10.1016/j.ymben.2021.05.001Available Online  
Guzik, M. W., Nitkiewicz, T., Wojnarowska, M., Soltysik, M., Kenny, S. T., Babu, R. P., et al. (2021). Robust process for high yield conversion of non-degradable polyethylene to a biodegradable plastic using a chemo-biotechnological approach. Waste Management, 135, 60-69. doi:10.1016/j.wasman.2021.08.030Available Online  
Narancic, T., Salvador, M., Hughes, G. M., Beagan, N., Abdulmutalib, U., Kenny, S. T., et al. (2021). Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates. Microbial Biotechnology, 14(6), 2463-2480. doi:10.1111/1751-7915.13712Available Online  
Liu, S., Narancic, T., Davis, C., & O’Connor, K. E. (2022). CRISPR-Cas9 Editing of the Synthesis of Biodegradable Polyesters Polyhydroxyalkanaotes (PHA) in Pseudomonas putida KT2440. Unknown Journal, 2397, 341-358. doi:10.1007/978-1-0716-1826-4_17Available Online  
Schmid, M. T., Sykacek, E., O'Connor, K., Omann, M., Mundigler, N., & Neureiter, M. (2022). Pilot scale production and evaluation of mechanical and thermal properties of P(3HB) from Bacillus megaterium cultivated on desugarized sugar beet molasses. Journal of Applied Polymer Science, 139(3). doi:10.1002/app.51503Available Online  
Dalton, B., Bhagabati, P., De Micco, J., Padamati, R. B., & O’Connor, K. (2022). A Review on Biological Synthesis of the Biodegradable Polymers Polyhydroxyalkanoates and the Development of Multiple Applications. Catalysts, 12(3). doi:10.3390/catal12030319Available Online  
Guzik, M. W., Duane, G. F., Kenny, S. T., Casey, E., Mielcarek, P., Wojnarowska, M., & O’Connor, K. E. (2022). A polyhydroxyalkanoates bioprocess improvement case study based on four fed-batch feeding strategies. Microbial Biotechnology, 15(3), 996-1006. doi:10.1111/1751-7915.13879Available Online  
Pavic, A., Stojanovic, Z., Pekmezovic, M., Veljovic, Ð., O’connor, K., Malagurski, I., & Nikodinovic-Runic, J. (2022). Polyenes in Medium Chain Length Polyhydroxyalkanoate (mcl-PHA) Biopolymer Microspheres with Reduced Toxicity and Improved Therapeutic Effect against Candida Infection in Zebrafish Model. Pharmaceutics, 14(4). doi:10.3390/pharmaceutics14040696Available Online  
Dr Tadhg Ó'Cróinín
Cinnéide, E., Jones, M., Bahate, E., Boyd, E., Clavero, R., Doherty, H., et al. (2021). Draft genome sequence of the yeast ogataea degrootiae strain UCD465, isolated from soil in Ireland. Microbiology Resource Announcements, 10(39). doi:10.1128/MRA.00736-21Available Online  
Whelan, M. V. X., Simpson, J. C., & Ó Cróinín, T. (2021). A novel high-content screening approach for the elucidation of C. jejuni biofilm composition and integrity. BMC Microbiology, 21(1). doi:10.1186/s12866-020-02062-5Available Online  
Dennehy, R., Duggan, N., Dignam, S., McCormack, S., Dillon, E., Molony, J., et al. (2022). Protein with negative surface charge distribution, Bnr1, shows characteristics of a DNA-mimic protein and may be involved in the adaptation of Burkholderia cenocepacia. MicrobiologyOpen, 11(1). doi:10.1002/mbo3.1264Available Online  
Assoc Professor Niamh O'Sullivan
Strachan, E. L., Mac White-Begg, D., Crean, J., Reynolds, A. L., Kennedy, B. N., & O’Sullivan, N. C. (2021). The Role of Mitochondria in Optic Atrophy With Autosomal Inheritance. Frontiers in Neuroscience, 15. doi:10.3389/fnins.2021.784987Available Online  
Garcia-Pardo, M. E., Simpson, J. C., & O’Sullivan, N. C. (2021). A novel automated image analysis pipeline for quantifying morphological changes to the endoplasmic reticulum in cultured human cells. BMC Bioinformatics, 22(1). doi:10.1186/s12859-021-04334-xAvailable Online  
Dr Maria Prencipe
Azam, H., Pierro, L., Reina, M., Gallagher, W. M., & Prencipe, M. (2022). Emerging role for the Serum Response Factor (SRF) as a potential therapeutic target in cancer. Expert Opinion on Therapeutic Targets, 26(2), 155-169. doi:10.1080/14728222.2022.2032652Available Online  
Dr Emmanuel Reynaud
Reynaud, E. G. (2022). The biology of imaging. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 380(2220). doi:10.1098/rsta.2020.0389Available Online  
Reynaud, E., Viscardi, P., & Whitman, J. (2022). Recording of Blaschka glass invertebrate models: A method and workflow for imaging using standardized methods. Journal of Natural Science Collections, 10, 115-145.  
Munck, S., Cawthorne, C., Escamilla-Ayala, A., Kerstens, A., Gabarre, S., Wesencraft, K., et al. (2022). Challenges and advances in optical 3D mesoscale imaging. Journal of Microscopy, 286(3), 201-219. doi:10.1111/jmi.13109Available Online  
Dr Laura Sala-Comorera
Pinar-Méndez, A., Fernández, S., Baquero, D., Vilaró, C., Galofré, B., González, S., et al. (2021). Rapid and improved identification of drinking water bacteria using the Drinking Water Library, a dedicated MALDI-TOF MS database. Water Research, 203. doi:10.1016/j.watres.2021.117543Available Online  
Sala-Comorera, L., Reynolds, L. J., Martin, N. A., Pascual-Benito, M., Stephens, J. H., Nolan, T. M., et al. (2021). crAssphage as a human molecular marker to evaluate temporal and spatial variability in faecal contamination of urban marine bathing waters. Science of the Total Environment, 789. doi:10.1016/j.scitotenv.2021.147828Available Online  
Reynolds, L. J., Sala-Comorera, L., Khan, M. F., Martin, N. A., Whitty, M., Stephens, J. H., et al. (2022). Coprostanol as a Population Biomarker for SARS-CoV-2 Wastewater Surveillance Studies. Water (Switzerland), 14(2). doi:10.3390/w14020225Available Online  
Reynolds, L., Sala-Comorera, L., Khan, M., Martin, N., Whitty, M., Stephens, J., et al. (2022). Coprostanol as a Population Biomarker for SARS-CoV-2 Wastewater Surveillance Studies. Water. doi:10.3390/w14020225Available Online  
Ahmed, W., Simpson, S. L., Bertsch, P. M., Bibby, K., Bivins, A., Blackall, L. L., et al. (2022). Minimizing errors in RT-PCR detection and quantification of SARS-CoV-2 RNA for wastewater surveillance. Science of the Total Environment, 805. doi:10.1016/j.scitotenv.2021.149877Available Online  
Dr Craig Slattery
Gaspar, V. I., McCaul, J., Cassidy, H., Slattery, C., & McMorrow, T. (2021). Effects of curcumin analogues dmc and ef24 in combination with the cytokine trail against kidney cancer. Molecules, 26(20). doi:10.3390/molecules26206302Available Online  
Dr Husvinee Sundaramurthi
Sundaramurthi, H., García-Mulero, S., Tonelotto, V., Slater, K., Marcone, S., Piulats, J. M., et al. (2022). Uveal Melanoma Cell Line Proliferation Is Inhibited by Ricolinostat, a Histone Deacetylase Inhibitor. Cancers, 14(3). doi:10.3390/cancers14030782Available Online  
Dr Dieter Waschbusch
Waschbüsch, D., Berndsen, K., Lis, P., Knebel, A., Lam, Y. P. Y., Alessi, D. R., & Khan, A. R. (2021). Structural basis for the specificity of PPM1H phosphatase for Rab GTPases. EMBO Reports, 22(11). doi:10.15252/embr.202152675Available Online  
Dr Luisa Weiss
Weiss, L., Keaney, J., Szklanna, P. B., Prendiville, T., Uhrig, W., Wynne, K., et al. (2021). Nonvalvular atrial fibrillation patients anticoagulated with rivaroxaban compared with warfarin exhibit reduced circulating extracellular vesicles with attenuated pro-inflammatory protein signatures. Journal of Thrombosis and Haemostasis, 19(10), 2583-2595. doi:10.1111/jth.15434Available Online  
Murphy, C. A., O'Reilly, D. P., Edebiri, O., Weiss, L., Cullivan, S., EL-Khuffash, A., et al. (2021). Haematological parameters and coagulation in umbilical cord blood following COVID-19 infection in pregnancy. European Journal of Obstetrics and Gynecology and Reproductive Biology, 266, 99-105. doi:10.1016/j.ejogrb.2021.09.019Available Online  
Comer, S. P., Le Chevillier, A., Szklanna, P. B., Kelliher, S., Saeed, K., Cullen, S., et al. (2022). Case Report: Hypergranular Platelets in Vaccine-Induced Thrombotic Thrombocytopenia After ChAdOx1 nCov-19 Vaccination. Frontiers in Cardiovascular Medicine, 9. doi:10.3389/fcvm.2022.824601Available Online  
Kelliher, S., Weiss, L., Cullivan, S., O’Rourke, E., Murphy, C. A., Toolan, S., et al. (2022). Non-severe COVID-19 is associated with endothelial damage and hypercoagulability despite pharmacological thromboprophylaxis. Journal of Thrombosis and Haemostasis, 20(4), 1008-1014. doi:10.1111/jth.15660Available Online  
Dr Yan Yan
Boselli, L., Lopez, H., Zhang, W., Cai, Q., Giannone, V. A., Li, J., et al. (2021). Author Correction: Classification and biological identity of complex nano shapes (Communications Materials, (2020), 1, 1, (35), 10.1038/s43246-020-0033-2). Communications Materials, 2(1). doi:10.1038/s43246-021-00155-wAvailable Online  
Wang, Y. F., Zhou, Y., Sun, J. B., Wang, X., Jia, Y., Ge, K., et al. (2022). The Yin and Yang of the protein corona on the delivery journey of nanoparticles. Nano Research. doi:10.1007/s12274-022-4849-6Available Online  
Zhang, W., Lopez, H., Boselli, L., Bigini, P., Perez-Potti, A., Xie, Z., et al. (2022). A Nanoscale Shape-Discovery Framework Supporting Systematic Investigations of Shape-Dependent Biological Effects and Immunomodulation. ACS Nano, 16(1), 1547-1559. doi:10.1021/acsnano.1c10074Available Online  
Tang, B., Yan, Y., Zhang, L., Zheng, W., Chen, G., & Li, Y. (2022). Editorial: Luminescent Nanomaterials in Translational Medicine. Frontiers in Chemistry, 10. doi:10.3389/fchem.2022.870300Available Online  
Fleming, A., Cursi, L., Behan, J. A., Yan, Y., Xie, Z., Adumeau, L., & Dawson, K. A. (2022). Designing Functional Bionanoconstructs for Effective in Vivo Targeting. Bioconjugate Chemistry, 33(3), 429-443. doi:10.1021/acs.bioconjchem.1c00546Available Online  
Wang, Y. F., Zhang, Q., Tian, F., Wang, H., Wang, Y., Ma, X., et al. (2022). Spatiotemporal Tracing of the Cellular Internalization Process of Rod-Shaped Nanostructures. ACS Nano, 16(3), 4059-4071. doi:10.1021/acsnano.1c09684Available Online  
Zhang, W., Li, J., Silveira, C. P., Cai, Q., Dawson, K. A., Cagney, G., & Yan, Y. (2022). Nanoscale shape-dependent histone modifications. PNAS Nexus, 1(4). doi:10.1093/pnasnexus/pgac172Available Online  

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Other

Professor Jan Rosier
Rosier, J. (2022). Disobedient youth.  
Rosier, J. (2022). Companies Walk the Talk. In De Tijd.  
Rosier, J. (2022). The university conducts research, industry cashes. In De Standaard.  

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Preprint

Professor Geraldine Butler
Bergin, S. A., Zhao, F., Ryan, A. P., Müller, C. A., Nieduszynski, C. A., Zhai, B., et al. (2021). Resistance to miltefosine results from amplification of the <i>RTA3</i> floppase or inactivation of flippases in <i>Candida parapsilosis</i>. doi:10.1101/2021.12.16.473093Available Online  
Zhai, B., Liao, C., Jaggavarapu, S., Rolling, T., Bergin, S. A., Gjonbalaj, M., et al. (2022). Echinocandin heteroresistance causes prophylaxis failure and facilitates breakthrough <i>Candida parapsilosis</i> infection. doi:10.1101/2022.05.29.22275734Available Online  
Lombardi, L., Bergin, S. A., Ryan, A., & Butler, G. (2022). CRISPR-Cas9 editing induces Loss of Heterozygosity in the pathogenic yeast <i>Candida parapsilosis</i>. doi:10.1101/2022.08.15.504067Available Online  
Professor William Gallagher
Bosisio, F., Antoranz, A., Herck, Y. V., Bolognesi, M., Lynch, S., Rahman, A., et al. (2022). Mapping the immune landscape in metastatic melanoma reveals localized cell-cell interactions correlating to immunotherapy responsiveness. doi:10.21203/rs.3.rs-1236531/v1Available Online  
Professor Breandán Kennedy
Gómez Sánchez, A., Álvarez, Y., Colligris, B., & Kennedy, B. (2022). Affordable and effective optokinetic response methods to assess visual acuity and contrast sensitivity in larval to juvenile zebrafish. doi:10.12688/openreseurope.13923.2Available Online  
Dr Lisa Lombardi
Lombardi, L., Bergin, S. A., Ryan, A., & Butler, G. (2022). CRISPR-Cas9 editing induces Loss of Heterozygosity in the pathogenic yeast <i>Candida parapsilosis</i>. doi:10.1101/2022.08.15.504067Available Online  
Dr Jens Rauch
Liu, Z., Krstic, A., Neve, A., Rauch, N., Wynne, K., Cassidy, H., et al. (2022). Kinase Suppressor of RAS 1 (KSR1) maintains the transformed phenotype of BRAFV600E mutant human melanoma cells. doi:10.1101/2022.08.16.504086Available Online  

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