UCD School of Biosystems and Food Engineering

UCD School of Biosystems and Food Engineering - Research Publications 2018/19

Below is the list of research publications for the School of Biosystems and Food Engineering in the academic year 2018/19



Book Chapters

Professor Da-Wen Sun
Su WH; Sun DW (2019) 'Advanced Analysis of Roots and Tubers by Hyperspectral Techniques' In:  Advances in Food and Nutrition Research., pp.255-303 Available Online  
Assoc Professor Aoife Gowen
Zahiri Z; Laefer DF; Gowen A (2019) 'Classification of Hardened Cement and Lime Mortar Using Short-Wave Infrared Spectrometry Data' In:  RILEM Bookseries., pp.437-446 Available Online  
de Juan A; Gowen A; Duponchel L; Ruckebusch C (2019) 'Image Fusion' In:  Data Handling in Science and Technology., pp.311-344 Available Online  
de Juan A; Gowen A; Duponchel L; Ruckebusch C (2019) 'Chapter 11 Image Fusion' In:  Data Fusion Methodology and Applications., pp.311-344 Available Online  

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Books Edited

Dr Tom Curran
Cummins EJ; Curran TP (Ed.). (2019)  Biosystems and Food Engineering Research Review 24.Dublin: University College Dublin  

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Journal Articles

Professor Da-Wen Sun
Cheng JH; Guo Q; Sun DW; Han Z (2019) 'Kinetic modeling of microwave extraction of polysaccharides from Astragalus membranaceus'. Journal of Food Processing and Preservation 43 (8) Available Online  
Cheng JH; Sun DW; Liu G; Chen YN (2019) 'Developing a multispectral model for detection of docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA) changes in fish fillet using physarum network and genetic algorithm (PN-GA) method'. Food Chemistry 270 :181-188.Available Online  
Cheng W; Sun DW; Pu H; Wei Q (2019) 'Interpretation and rapid detection of secondary structure modification of actomyosin during frozen storage by near-infrared hyperspectral imaging'. Journal of Food Engineering 246 :200-208.Available Online  
Chizoba Ekezie FG; Cheng JH; Sun DW (2018) 'Effects of Mild Oxidative and Structural Modifications Induced by Argon Plasma on Physicochemical Properties of Actomyosin from King Prawn (Litopenaeus vannamei)'. Journal of Agricultural and Food Chemistry 66 (50) :13285-13294.Available Online  
Ekezie FGC; Cheng JH; Sun DW (2019) 'Effects of atmospheric pressure plasma jet on the conformation and physicochemical properties of myofibrillar proteins from king prawn (Litopenaeus vannamei)'. Food Chemistry 276 :147-156.Available Online  
Fu G; Sun DW; Pu H; Wei Q (2019) 'Fabrication of gold nanorods for SERS detection of thiabendazole in apple'. Talanta 195 :841-849.Available Online  
Han Y; Cheng JH; Sun DW (2019) 'Activities and conformation changes of food enzymes induced by cold plasma: A review'. Critical Reviews in Food Science and Nutrition 59 (5) :794-811.Available Online  
Han Z; Cai MJ; Cheng JH; Sun DW (2019) 'Effects of microwave and water bath heating on the interactions between myofibrillar protein from beef and ketone flavour compounds'. International Journal of Food Science and Technology 54 (5) :1787-1793.Available Online  
He H; Sun DW; Pu H; Chen L; Lin L (2019) 'Applications of Raman spectroscopic techniques for quality and safety evaluation of milk: A review of recent developments'. Critical Reviews in Food Science and Nutrition 59 (5) :770-793.Available Online  
Huang L; Sun DW; Pu H; Wei Q; Luo L; Wang J (2019) 'A colorimetric paper sensor based on the domino reaction of acetylcholinesterase and degradable Γ-MnOOH nanozyme for sensitive detection of organophosphorus pesticides'. Sensors and Actuators, B: Chemical 290 :573-580.Available Online  
Hussain A; Pu H; Sun DW (2019) 'Measurements of lycopene contents in fruit: A review of recent developments in conventional and novel techniques'. Critical Reviews in Food Science and Nutrition 59 (5) :758-769.Available Online  
Hussain A; Sun DW; Pu H (2019) 'SERS detection of urea and ammonium sulfate adulterants in milk with coffee ring effect'. Food Additives and Contaminants - Part A Chemistry, Analysis, Control, Exposure and Risk Assessment 36 (6) :851-862.Available Online  
Jiang Y; Sun DW; Pu H; Wei Q (2019) 'Ultrasensitive analysis of kanamycin residue in milk by SERS-based aptasensor'. Talanta 197 :151-158.Available Online  
Lei T; Lin XH; Sun DW (2019) 'Rapid classification of commercial Cheddar cheeses from different brands using PLSDA, LDA and SPA–LDA models built by hyperspectral data'. Journal of Food Measurement and Characterization  Available Online  
Lei T; Sun DW (2019) 'Developments of nondestructive techniques for evaluating quality attributes of cheeses: A review'. Trends in Food Science and Technology 88 :527-542.Available Online  
Lin X; Sun DW (2019) 'Research advances in browning of button mushroom (Agaricus bisporus): Affecting factors and controlling methods'. Trends in Food Science and Technology 90 :63-75.Available Online  
Lin X; Xu JL; Sun DW (2019) 'Investigation of moisture content uniformity of microwave-vacuum dried mushroom (Agaricus bisporus) by NIR hyperspectral imaging'. LWT 109 :108-117.Available Online  
Liu Y; Sun DW; Cheng JH; Han Z (2018) 'Hyperspectral Imaging Sensing of Changes in Moisture Content and Color of Beef During Microwave Heating Process'. Food Analytical Methods 11 (9) :2472-2484.Available Online  
Ma J; Cheng JH; Sun DW; Liu D (2019) 'Mapping changes in sarcoplasmatic and myofibrillar proteins in boiled pork using hyperspectral imaging with spectral processing methods'. LWT 110 :338-345.Available Online  
Ma J; Sun DW; Pu H; Cheng JH; Wei Q (2019) 'Advanced Techniques for Hyperspectral Imaging in the Food Industry: Principles and Recent Applications'. Annual Review of Food Science and Technology 10 :197-220.Available Online  
Ma J; Sun DW; Pu H; Wei Q; Wang X (2019) 'Protein content evaluation of processed pork meats based on a novel single shot (snapshot) hyperspectral imaging sensor'. Journal of Food Engineering 240 :207-213.Available Online  
Pan TT; Chyngyz E; Sun DW; Paliwal J; Pu H (2019) 'Pathogenetic process monitoring and early detection of pear black spot disease caused by Alternaria alternata using hyperspectral imaging'. Postharvest Biology and Technology 154 :96-104.Available Online  
Pan TT; Sun DW; Paliwal J; Pu H; Wei Q (2018) 'New Method for Accurate Determination of Polyphenol Oxidase Activity Based on Reduction in SERS Intensity of Catechol'. Journal of Agricultural and Food Chemistry 66 (42) :11180-11187.Available Online  
Pan Y; Cheng JH; Lv X; Sun DW (2019) 'Assessing the inactivation efficiency of Ar/O<inf>2</inf> plasma treatment against Listeria monocytogenes cells: Sublethal injury and inactivation kinetics'. LWT 111 :318-327.Available Online  
Pu H; Huang Z; Sun DW; Fu H (2019) 'Recent advances in the detection of 17β-estradiol in food matrices: A review'. Critical Reviews in Food Science and Nutrition 59 (13) :2144-2157.Available Online  
Pu H; Huang Z; Sun DW; Xie X; Zhou W (2019) 'Development of a Highly Sensitive Colorimetric Method for Detecting 17Β-Estradiol Based on Combination of Gold Nanoparticles and Shortening DNA Aptamers'. Water, Air, and Soil Pollution 230 (6) Available Online  
Pu H; Lin L; Sun DW (2019) 'Principles of Hyperspectral Microscope Imaging Techniques and Their Applications in Food Quality and Safety Detection: A Review'. Comprehensive Reviews in Food Science and Food Safety  Available Online  
Pu H; Xie X; Sun DW; Wei Q; Jiang Y (2019) 'Double strand DNA functionalized Au@Ag Nps for ultrasensitive detection of 17β-estradiol using surface-enhanced raman spectroscopy'. Talanta 195 :419-425.Available Online  
Pu YY; Sun DW; Buccheri M; Grassi M; Cattaneo TMP; Gowen A (2019) 'Ripeness Classification of Bananito Fruit (Musa acuminata, AA): a Comparison Study of Visible Spectroscopy and Hyperspectral Imaging'. Food Analytical Methods 12 (8) :1693-1704.Available Online  
Pu YY; Zhao M; O’Donnell C; Sun DW (2018) 'Nondestructive quality evaluation of banana slices during microwave vacuum drying using spectral and imaging techniques'. Drying Technology 36 (13) :1542-1553.Available Online  
Qu JH; Wei Q; Sun DW (2018) 'Carbon dots: Principles and their applications in food quality and safety detection'. Critical Reviews in Food Science and Nutrition 58 (14) :2466-2475.Available Online  
Sohail M; Sun DW; Zhu Z (2018) 'Recent developments in intelligent packaging for enhancing food quality and safety'. Critical Reviews in Food Science and Nutrition 58 (15) :2650-2662.Available Online  
Su WH; Bakalis S; Sun DW (2019) 'Chemometric determination of time series moisture in both potato and sweet potato tubers during hot air and microwave drying using near/mid-infrared (NIR/MIR) hyperspectral techniques'. Drying Technology  Available Online  
Su WH; Bakalis S; Sun DW (2019) 'Chemometrics in tandem with near infrared (NIR) hyperspectral imaging and Fourier transform mid infrared (FT-MIR) microspectroscopy for variety identification and cooking loss determination of sweet potato'. Biosystems Engineering 180 :70-86.Available Online  
Su WH; Bakalis S; Sun DW (2019) 'Fingerprinting study of tuber ultimate compressive strength at different microwave drying times using mid-infrared imaging spectroscopy'. Drying Technology 37 (9) :1113-1130.Available Online  
Su WH; Bakalis S; Sun DW (2019) 'Potato hierarchical clustering and doneness degree determination by near-infrared (NIR) and attenuated total reflectance mid-infrared (ATR-MIR) spectroscopy'. Journal of Food Measurement and Characterization 13 (2) :1218-1231.Available Online  
Wang K; Sun DW; Pu H; Wei Q (2019) 'Shell thickness-dependent Au@Ag nanoparticles aggregates for high-performance SERS applications'. Talanta 195 :506-515.Available Online  
Wang K; Sun DW; Pu H; Wei Q (2019) 'Surface-enhanced Raman scattering of core-shell Au@Ag nanoparticles aggregates for rapid detection of difenoconazole in grapes'. Talanta 191 :449-456.Available Online  
Wang K; Sun DW; Pu H; Wei Q; Huang L (2019) 'Stable, Flexible, and High-Performance SERS Chip Enabled by a Ternary Film-Packaged Plasmonic Nanoparticle Array'. ACS Applied Materials and Interfaces 11 (32) :29177-29186.Available Online  
Wang K; Sun DW; Wei Q; Pu H (2018) 'Quantification and visualization of α-tocopherol in oil-in-water emulsion based delivery systems by Raman microspectroscopy'. LWT 96 :66-74.Available Online  
Wang Q; Li Y; Sun DW; Zhu Z (2018) 'Enhancing Food Processing by Pulsed and High Voltage Electric Fields: Principles and Applications'. Critical Reviews in Food Science and Nutrition 58 (13) :2285-2298.Available Online  
Wang Q; Li Y; Sun DW; Zhu Z (2019) 'Effects of high-voltage electric field produced by an improved electrode system on freezing behaviors and selected properties of agarose gel'. Journal of Food Engineering 254 :25-33.Available Online  
Wei Q; Liu T; Sun DW (2018) 'Advanced glycation end-products (AGEs) in foods and their detecting techniques and methods: A review'. Trends in Food Science and Technology 82 :32-45.Available Online  
Wei Q; Wang X; Cheng JH; Zeng G; Sun DW (2018) 'Synthesis and antimicrobial activities of novel sorbic and benzoic acid amide derivatives'. Food Chemistry 268 :220-232.Available Online  
Wei Q; Wang X; Sun DW; Pu H (2019) 'Rapid detection and control of psychrotrophic microorganisms in cold storage foods: A review'. Trends in Food Science and Technology 86 :453-464.Available Online  
Wen L; Zhang Z; Sun D-W; Sivagnanam SP; Tiwari BK (2019) 'Combination of emerging technologies for the extraction of bioactive compounds.'. Critical reviews in food science and nutrition  :1-16.Available Online  
Wu L; Pu H; Sun DW (2019) 'Novel techniques for evaluating freshness quality attributes of fish: A review of recent developments'. Trends in Food Science and Technology 83 :259-273.Available Online  
Xie X; Pu H; Sun DW (2018) 'Recent advances in nanofabrication techniques for SERS substrates and their applications in food safety analysis'. Critical Reviews in Food Science and Nutrition 58 (16) :2800-2813.Available Online  
Xu JL; Gobrecht A; Héran D; Gorretta N; Coque M; Gowen AA; Bendoula R; Sun DW (2019) 'A polarized hyperspectral imaging system for in vivo detection: Multiple applications in sunflower leaf analysis'. Computers and Electronics in Agriculture 158 :258-270.Available Online  
Yaseen T; Pu H; Sun DW (2019) 'Fabrication of silver-coated gold nanoparticles to simultaneously detect multi-class insecticide residues in peach with SERS technique'. Talanta 196 :537-545.Available Online  
Yaseen T; Pu H; Sun DW (2019) 'Rapid detection of multiple organophosphorus pesticides (triazophos and parathion-methyl) residues in peach by SERS based on core-shell bimetallic Au@Ag NPs'. Food Additives and Contaminants - Part A Chemistry, Analysis, Control, Exposure and Risk Assessment 36 (5) :762-778.Available Online  
Yaseen T; Sun DW; Pu H; Pan TT (2018) 'Detection of Omethoate Residues in Peach with Surface-Enhanced Raman Spectroscopy'. Food Analytical Methods 11 (9) :2518-2527.Available Online  
Zhan X; Sun DW; Zhu Z; Wang QJ (2018) 'Improving the quality and safety of frozen muscle foods by emerging freezing technologies: A review'. Critical Reviews in Food Science and Nutrition 58 (17) :2925-2938.Available Online  
Zhan X; Zhu Z; Sun DW (2019) 'Effects of extremely low frequency electromagnetic field on the freezing processes of two liquid systems'. LWT 103 :212-221.Available Online  
Zhan X; Zhu Z; Sun DW (2019) 'Effects of pretreatments on quality attributes of long-term deep frozen storage of vegetables: a review'. Critical Reviews in Food Science and Nutrition 59 (5) :743-757.Available Online  
Zhang K; Perussello CA; Milosavljević V; Cullen PJ; Sun DW; Tiwari BK (2019) 'Diagnostics of plasma reactive species and induced chemistry of plasma treated foods'. Critical Reviews in Food Science and Nutrition 59 (5) :812-825.Available Online  
Zhang P; Zhu Z; Sun DW (2018) 'Using power ultrasound to accelerate food freezing processes: Effects on freezing efficiency and food microstructure'. Critical Reviews in Food Science and Nutrition 58 (16) :2842-2853.Available Online  
Zhao YM; de Alba M; Sun DW; Tiwari B (2019) 'Principles and recent applications of novel non-thermal processing technologies for the fish industry—a review'. Critical Reviews in Food Science and Nutrition 59 (5) :728-742.Available Online  
Zhu Z; Cai H; Sun DW; Wang HW (2019) 'Photocatalytic effects on the quality of pork packed in the package combined with TiO <inf>2</inf> coated nonwoven fabrics'. Journal of Food Process Engineering 42 (3) Available Online  
Zhu Z; Chen Z; Zhou Q; Sun DW; Chen H; Zhao Y; Zhou W; Li X; Pan H (2018) 'Freezing Efficiency and Quality Attributes as Affected by Voids in Plant Tissues During Ultrasound-Assisted Immersion Freezing'. Food and Bioprocess Technology 11 (9) :1615-1626.Available Online  
Zhu Z; Geng Y; Sun DW (2019) 'Effects of operation processes and conditions on enhancing performances of vacuum cooling of foods: A review'. Trends in Food Science and Technology 85 :67-77.Available Online  
Zhu Z; Li Y; Sun DW; Wang HW (2019) 'Developments of mathematical models for simulating vacuum cooling processes for food products–a review'. Critical Reviews in Food Science and Nutrition 59 (5) :715-727.Available Online  
Zhu Z; Zhou Q; Sun DW (2019) 'Measuring and controlling ice crystallization in frozen foods: A review of recent developments'. Trends in Food Science and Technology 90 :13-25.Available Online  
Dr Nebras Al Attar
Al-Shammari RM; Baghban MA; Al-Attar N; Gowen A; Gallo K; Rice JH; Rodriguez BJ (2018) 'Photoinduced Enhanced Raman from Lithium Niobate on Insulator Template'. ACS Applied Materials and Interfaces 10 (36) :30871-30878.Available Online  
Malallah R; Li H; Qi Y; Cassidy D; Muniraj I; Al-Attar N; Sheridan JT (2019) 'Improving the uniformity of holographic recording using multilayer photopolymer. Part I. Theoretical analysis'. Journal of the Optical Society of America A: Optics and Image Science, and Vision 36 (3) :320-333.Available Online  
Malallah R; Li H; Qi Y; Cassidy D; Muniraj I; Al-Attar N; Sheridan JT (2019) 'Improving the uniformity of holographic recording using multi-layer photopolymer: Part II. Experimental results'. Journal of the Optical Society of America A: Optics and Image Science, and Vision 36 (3) :334-344.Available Online  
Dr Dimitrios Argyropoulos
Munder S; Argyropoulos D; Müller J (2019) 'Acquisition of sorption and drying data with embedded devices: Improving standard models for high oleic sunflower seeds by continuous measurements in dynamic systems'. Agriculture (Switzerland) 9 (1) Available Online  
Professor Francis Butler
Alvarez-Ordóñez A; Leong D; Hunt K; Scollard J; Butler F; Jordan K (2018) 'Production of safer food by understanding risk factors for L. monocytogenes occurrence and persistence in food processing environments'. Journal of Food Safety 38 (6) Available Online  
Rupnik A; Keaveney S; Devilly L; Butler F; Doré W (2018) 'The Impact of Winter Relocation and Depuration on Norovirus Concentrations in Pacific Oysters Harvested from a Commercial Production Site'. Food and Environmental Virology 10 (3) :288-296.Available Online  
von Westerholt F; Butler F (2019) 'A Bayesian estimation of the concentration of microbial organisms in powdered foods arising from repeat testing for microbial contamination'. Microbial Risk Analysis  Available Online  
Professor Enda Cummins
Azlin-Hasim S; Cruz-Romero MC; Morris MA; Cummins E; Kerry JP (2018) 'Spray coating application for the development of nanocoated antimicrobial low-density polyethylene films to increase the shelf life of chicken breast fillets'. Food Science and Technology International 24 (8) :688-698.Available Online  
Cummins E; Hospido A; Van Impe JFM (2019) 'Quantitative tools for sustainable food and energy in the food chain'. Food Research International 115 :126-127.Available Online  
Monagail MM; Cummins E; Bermejo R; Daly E; Costello D; Morrison L (2018) 'Quantification and feed to food transfer of total and inorganic arsenic from a commercial seaweed feed'. Environment International 118 :314-324.Available Online  
O'Flaherty E; Solimini A; Pantanella F; Cummins E (2019) 'The potential human exposure to antibiotic resistant-Escherichia coli through recreational water'. Science of the Total Environment 650 :786-795.Available Online  
O'Flaherty E; Solimini AG; Pantanella F; De Giusti M; Cummins E (2019) 'Human exposure to antibiotic resistant-Escherichia coli through irrigated lettuce'. Environment International 122 :270-280.Available Online  
Sullivan DJ; Cruz-Romero M; Collins T; Cummins E; Kerry JP; Morris MA (2018) 'Synthesis of monodisperse chitosan nanoparticles'. Food Hydrocolloids 83 :355-364.Available Online  
Dr Tom Curran
Kelleghan DB; Hayes ET; Everard M; Curran TP (2019) 'Mapping ammonia risk on sensitive habitats in Ireland'. Science of the Total Environment 649 :1580-1589.Available Online  
Dr Carlos Esquerre Fernandez
Achata EM; Inguglia ES; Esquerre CA; Tiwari BK; O'Donnell CP (2019) 'Evaluation of Vis-NIR hyperspectral imaging as a process analytical tool to classify brined pork samples and predict brining salt concentration'. Journal of Food Engineering 246 :134-140.Available Online  
Delwiche SR; Stommel JR; Kim MS; Vinyard BT; Esquerre C (2019) 'Hyperspectral fluorescence imaging for shelf life evaluation of fresh-cut Bell and Jalapeno Pepper'. Scientia Horticulturae 246 :749-758.Available Online  
Henihan LE; O'Donnell CP; Esquerre C; Murphy EG; O'Callaghan DJ (2019) 'Fluorescence-based analyser as a rapid tool for determining soluble protein content in dairy ingredients and infant milk formula'. Innovative Food Science and Emerging Technologies 52 :75-79.Available Online  
Dr Mariateresa Ferone
Ferone M; Raganati F; Olivieri G; Marzocchella A (2019) 'Bioreactors for succinic acid production processes'. Critical Reviews in Biotechnology 39 (4) :571-586.Available Online  
Ferone M; Raganati F; Olivieri G; Salatino P; Marzocchella A (2019) 'Continuous Succinic Acid Fermentation by Actinobacillus Succinogenes: Assessment of Growth and Succinic Acid Production Kinetics'. Applied Biochemistry and Biotechnology 187 (3) :782-799.Available Online  
Assoc Professor Aoife Gowen
Al-Shammari RM; Baghban MA; Al-Attar N; Gowen A; Gallo K; Rice JH; Rodriguez BJ (2018) 'Photoinduced Enhanced Raman from Lithium Niobate on Insulator Template'. ACS Applied Materials and Interfaces 10 (36) :30871-30878.Available Online  
Caponigro V; Marini F; Dorrepaal RM; Herrero-Langreo A; Scannell AGM; Gowen AA (2019) 'Raman and Fourier transform infrared hyperspectral imaging to study dairy residues on different surfaces'. Journal of Spectral Imaging 8 Available Online  
Dorrepaal RM; Gowen AA (2018) 'Identification of Magnesium Oxychloride Cement Biomaterial Heterogeneity using Raman Chemical Mapping and NIR Hyperspectral Chemical Imaging'. Scientific Reports 8 (1) Available Online  
Ekoi EJ; Gowen A; Dorrepaal R; Dowling DP (2019) 'Characterisation of titanium oxide layers using Raman spectroscopy and optical profilometry: Influence of oxide properties'. Results in Physics 12 :1574-1585.Available Online  
Gillespie GD; Gowen AA; Finnan JM; Carroll JP; Farrelly DJ; McDonnell KP (2019) 'Near infrared hyperspectral imaging for the prediction of gaseous and particulate matter emissions from pine wood pellets'. Biosystems Engineering 179 :94-105.Available Online  
Gowen AA; Xu JL; Herrero-Langreo A (2019) 'Comparison of spectral selection methods in in this issue: Spectral preprocessing to compensate for packaging film / using neural nets to invert the prosail canopy model the development of classification models from visible near infrared hyperspectral imaging data'. Journal of Spectral Imaging 8 Available Online  
Mukherjee S; Martinez-Gonzalez JA; Gowen AA (2019) 'Feasibility of attenuated total reflection-fourier transform infrared (ATR-FTIR) chemical imaging and partial least squares regression (PLSR) to predict protein adhesion on polymeric surfaces'. Analyst 144 (5) :1535-1545.Available Online  
Pu YY; Sun DW; Buccheri M; Grassi M; Cattaneo TMP; Gowen A (2019) 'Ripeness Classification of Bananito Fruit (Musa acuminata, AA): a Comparison Study of Visible Spectroscopy and Hyperspectral Imaging'. Food Analytical Methods 12 (8) :1693-1704.Available Online  
Xu JL; Gobrecht A; Gorretta N; Héran D; Gowen AA; Bendoula R (2019) 'Development of a polarized hyperspectral imaging system for investigation of absorption and scattering properties'. Journal of Near Infrared Spectroscopy 27 (4) :314-329.Available Online  
Xu JL; Gobrecht A; Héran D; Gorretta N; Coque M; Gowen AA; Bendoula R; Sun DW (2019) 'A polarized hyperspectral imaging system for in vivo detection: Multiple applications in sunflower leaf analysis'. Computers and Electronics in Agriculture 158 :258-270.Available Online  
Xu JL; Gowen AA (2019) 'Investigation of plasticizer aggregation problem in casein based biopolymer using chemical imaging'. Talanta 193 :128-138.Available Online  
Xu JL; Gowen AA (2019) 'Spatial-spectral analysis method using texture features combined with PCA for information extraction in hyperspectral images'. Journal of Chemometrics  Available Online  
Zahiri Z; Laefer DF; Gowen A (2018) 'The feasibility of short-wave infrared spectrometry in assessing water-to-cement ratio and density of hardened concrete'. Construction and Building Materials 185 :661-669.Available Online  
Dr Ronald Halim
Halim R; Hill DRA; Hanssen E; Webley PA; Blackburn S; Grossman AR; Posten C; Martin GJO (2019) 'Towards sustainable microalgal biomass processing: Anaerobic induction of autolytic cell-wall self-ingestion in lipid-rich: Nannochloropsis slurries'. Green Chemistry 21 (11) :2967-2982.Available Online  
Dr Ana Herrero-Langreo
Bendoula R; Ducanchez A; Herrero-Langreo A; Guerrero-Castro P; Roger JM; Gobrecht A (2019) 'Effect of the architecture of fiber-optic probes designed for soluble solid content prediction in intact sugar beet slices'. Sensors (Switzerland) 19 (13) Available Online  
Caponigro V; Marini F; Dorrepaal RM; Herrero-Langreo A; Scannell AGM; Gowen AA (2019) 'Raman and Fourier transform infrared hyperspectral imaging to study dairy residues on different surfaces'. Journal of Spectral Imaging 8 Available Online  
Gowen AA; Xu JL; Herrero-Langreo A (2019) 'Comparison of spectral selection methods in in this issue: Spectral preprocessing to compensate for packaging film / using neural nets to invert the prosail canopy model the development of classification models from visible near infrared hyperspectral imaging data'. Journal of Spectral Imaging 8 Available Online  
Professor Nick Holden
Cao J; Li G; Adamowski JF; Holden NM; Deo RC; Hu Z; Zhu G; Xu X; Feng Q (2019) 'Suitable exclosure duration for the restoration of degraded alpine grasslands on the Qinghai-Tibetan Plateau'. Land Use Policy 86 :261-267.Available Online  
Cao JJ; Holden NM; Adamowski JF; Deo RC; Xu XY; Feng Q (2018) 'Can individual land ownership reduce grassland degradation and favor socioeconomic sustainability on the Qinghai-Tibetan Plateau?'. Environmental Science and Policy 89 :192-197.Available Online  
Chen W; Oldfield TL; Katsantonis D; Kadoglidou K; Wood R; Holden NM (2019) 'The socio-economic impacts of introducing circular economy into Mediterranean rice production'. Journal of Cleaner Production 218 :273-283.Available Online  
Emmet-Booth JP; Forristal PD; Fenton O; Bondi G; Holden NM (2019) 'Visual soil evaluation – Spade vs. profile methods and the information conveyed for soil management'. Soil and Tillage Research 187 :135-143.Available Online  
Finnegan W; Yan M; Holden NM; Goggins J (2018) 'A review of environmental life cycle assessment studies examining cheese production'. International Journal of Life Cycle Assessment 23 (9) :1773-1787.Available Online  
Rice P; O’Brien D; Shalloo L; Holden NM (2019) 'Defining a functional unit for dairy production LCA that reflects the transaction between the farmer and the dairy processor'. International Journal of Life Cycle Assessment 24 (4) :642-653.Available Online  
Sharma P; Humphreys J; Holden NM (2018) 'Environmental impacts of alternative agricultural uses of poorly drained farm land in Ireland'. Science of the Total Environment 637-638 :120-131.Available Online  
Sharma P; Humphreys J; Holden NM (2018) 'The environmental impact of dairy production on poorly drained soils under future climate scenarios for Ireland'. Journal of Environmental Management 223 :625-632.Available Online  
Yan M; Holden NM (2018) 'Life cycle assessment of multi-product dairy processing using Irish butter and milk powders as an example'. Journal of Cleaner Production 198 :215-230.Available Online  
Dr Anastasia Ktenioudaki
Ktenioudaki A; O'Donnell CP; do Nascimento Nunes MC (2019) 'Modelling the biochemical and sensory changes of strawberries during storage under diverse relative humidity conditions'. Postharvest Biology and Technology 154 :148-158.Available Online  
Dr Fionnuala Murphy
Clarke R; Sosa A; Murphy F (2019) 'Spatial and life cycle assessment of bioenergy-driven land-use changes in Ireland'. Science of the Total Environment 664 :262-275.Available Online  
Professor Colm O'Donnell
Achata EM; Inguglia ES; Esquerre CA; Tiwari BK; O'Donnell CP (2019) 'Evaluation of Vis-NIR hyperspectral imaging as a process analytical tool to classify brined pork samples and predict brining salt concentration'. Journal of Food Engineering 246 :134-140.Available Online  
Bista A; Hogan SA; O'Donnell CP; Tobin JT; O'Shea N (2019) 'Evaluation and validation of an inline Coriolis flowmeter to measure dynamic viscosity during laboratory and pilot-scale food processing'. Innovative Food Science and Emerging Technologies 54 :211-218.Available Online  
Henihan LE; O'Donnell CP; Esquerre C; Murphy EG; O'Callaghan DJ (2019) 'Fluorescence-based analyser as a rapid tool for determining soluble protein content in dairy ingredients and infant milk formula'. Innovative Food Science and Emerging Technologies 52 :75-79.Available Online  
Hinds LM; O'Donnell CP; Akhter M; Tiwari BK (2019) 'Principles and mechanisms of ultraviolet light emitting diode technology for food industry applications'. Innovative Food Science and Emerging Technologies 56 Available Online  
Ktenioudaki A; O'Donnell CP; do Nascimento Nunes MC (2019) 'Modelling the biochemical and sensory changes of strawberries during storage under diverse relative humidity conditions'. Postharvest Biology and Technology 154 :148-158.Available Online  
Panikuttira B; Payne FA; O'Shea N; Tobin JT; O'Callaghan DJ; O'Donnell CP (2019) 'Investigation of an in-line prototype fluorescence and infrared backscatter sensor to monitor rennet-induced coagulation of skim milk at different protein concentrations'. International Journal of Food Science and Technology  Available Online  
Panikuttira B; Payne FA; O'Shea N; Tobin JT; O'Donnell CP (2019) 'Evaluation of a fluorescence and infrared backscatter sensor to monitor acid induced coagulation of skim milk'. Innovative Food Science and Emerging Technologies 54 :219-224.Available Online  
Pu YY; Zhao M; O’Donnell C; Sun DW (2018) 'Nondestructive quality evaluation of banana slices during microwave vacuum drying using spectral and imaging techniques'. Drying Technology 36 (13) :1542-1553.Available Online  
Dr Sharon O'Rourke
Butler BM; O’Rourke SM; Hillier S (2018) 'Using rule-based regression models to predict and interpret soil properties from X-ray powder diffraction data'. Geoderma 329 :43-53.Available Online  
Dr Rebecca Whetton
Whetton RL; Waine TW; Mouazen AM (2018) 'Evaluating management zone maps for variable rate fungicide application and selective harvest'. Computers and Electronics in Agriculture 153 :202-212.Available Online  
Ms Junli Xu
Gowen AA; Xu JL; Herrero-Langreo A (2019) 'Comparison of spectral selection methods in in this issue: Spectral preprocessing to compensate for packaging film / using neural nets to invert the prosail canopy model the development of classification models from visible near infrared hyperspectral imaging data'. Journal of Spectral Imaging 8 Available Online  
Lin X; Xu JL; Sun DW (2019) 'Investigation of moisture content uniformity of microwave-vacuum dried mushroom (Agaricus bisporus) by NIR hyperspectral imaging'. LWT 109 :108-117.Available Online  
Xu JL; Gobrecht A; Héran D; Gorretta N; Coque M; Gowen AA; Bendoula R; Sun DW (2019) 'A polarized hyperspectral imaging system for in vivo detection: Multiple applications in sunflower leaf analysis'. Computers and Electronics in Agriculture 158 :258-270.Available Online  
Xu JL; Gowen AA (2019) 'Investigation of plasticizer aggregation problem in casein based biopolymer using chemical imaging'. Talanta 193 :128-138.Available Online  

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Conference Publications

Assoc Professor Aoife Gowen
Al-Attar N; Al-Shammari RM; Minshid MA; Rodriguez BJ; Sheridan JT; Gowen A; Rice JH (2019) Self-assemble organic molecular micron-sized tubular structures for active and passive wave-guiding regimes  In: Proceedings of SPIE - The International Society for Optical Engineering, Available Online  
Gowen A (2018) Plenary: Near Infrared Spectral Imaging: from the macro- to the micro-scale and beyond.  In: WHISPERS (Workshop on Hyperspectral Image and Signal Processing) 2018  
Gowen A; Kucheryavski S; Duponchel L (2018) On the use of interpolation methods in hyperspectral image analysis  In: HSI 2018  
Herrero-Langreo A; Chemburkar G; Scannell A; Gowen A (2018) Near infrared imaging of agar on glass and plastic petri dishes: effects of sample presentation  In: HSI 2018  
Mukherjee S; Martínez-González J; Gowen A (2018) Quantitative detection of protein on gold surfaces using mid-infrared chemical imaging  In: HSI 2018  
Murphy T; Alattar N; Gonzalez CA; Rahman A; Gallagher W; Watson W; Gowen A (2018) Comparative study of Raman imaging of dry and water immersed prostate tissue  In: HSI 2018  
Dr Ana Herrero-Langreo
Herrero-Langreo A; Chemburkar G; Scannell A; Gowen A (2018) Near infrared imaging of agar on glass and plastic petri dishes: effects of sample presentation  In: HSI 2018  
Professor Colm O'Donnell
Achata E; Oliveira M; Esquerre C; Tiwari B; O'Donnell C (2019) Data fusion of hyperspectral images for the prediction of bacterial growth on beef longissimus dorsi m. under simulated normal and abuse storage conditions  In: 65th International Congress on Meat Science and Technology (ICoMST2019), Potsdam/Berlin, Germany  
Charoux C; Free L; Tiwari B; O'Donnell C (2018) The effect of a non-thermal plasma jet system on selected dried food ingredients, World Congress of Food Science and Technology, Mumbai, India, 23 - 27 October, 2018.  In: World Congress of Food Science and Technology, Nave Mumbai, India  
Condon K; Rajauria G; Jaiswal A; Vaquero M; O'Donnell C; ODoherty J; Tiwari B (2019) Ultrasound assisted extraction of Phlorotannins from brown seaweed (Fucus vesiculosus)  In: 2019 American Society of Agricultural and Biological Engineering (ASABE) Annual International Meeting, Boston, USA  
Hinds L; O'Donnell C; Tiwari B (2019) Ultraviolet Light Emitting Diodes as a Food Decontamination Technique  In: 2019 American Society of Agricultural and Biological Engineering (ASABE) Annual International Meeting, Boston, USA  
Ktenioudaki A; Smith A; O'Donnell C; Nunes C (2019) Quality degradation kinetics of fresh strawberries exposed to different levels of relative humidity  In: 2019 Institute of Food Technology Annual Meeting (IFT19), New Orleans, USA, New Orleans  
Luo J; Esquerre C; Payne F; O'Donnell C (2019) Effect of Seasonal Milk Compositional Variation on Coagulation Kinetics during Cheese Manufacture  In: 2019 American Society of Agricultural and Biological Engineering (ASABE) Annual International Meeting,, Boston, USA  
O'Donnell C (2018) Development and application of process analytical technology tools in meat processing  In: 19th World Congress of Food Science and Technology, Navi Mumbai, India  

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Published Reports

Professor Enda Cummins
McGillicuddy E; Murray I; Shevlin D; Morrison L; Cormican M; Fogarty A; Cummins E; Dockery P; Dunlop P; Rowan N (2018)  Detection, Toxicology, Environmental Fate and Risk Assessment of Nanoparticles in the Aquatic Environment. Dublin, Ireland: EPA  

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