UCD Biology & Environmental Science
UCD School of Biology & Environmental Science - Research Publications 2019/20
Below is the list of research publications for the UCD School of Biology & Environmental Science in the academic year 2019/20.
Below is the list of research publications for the UCD School of Biology & Environmental Science in the academic year 2019/20.
| Dr Nadia Al-Tamimi | |
| Al-Tamimi N; Oakey H; Tester M; Negrão S (2020) 'Assessing rice salinity tolerance: from phenomics to association mapping' In: Springer Protocols.New York City: Springer. | |
| Dr Ibrahim Khalil | |
Ibrahim Khalil M; Francaviglia R; Henry B; Klumpp K; Koncz P; Llorente M; Emoke Madari B; Muñoz-Rojas M; Nerger R (2020) 'Strategic Management of Grazing Grassland Systems to Maintain and Increase Organic Carbon in Soils' In: CO2 Sequestration. IntechOpen.  |
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| Professor Bruce Osborne | |
| Khalil MI; Faiz-ul Islam S; O’Neill M; Osborne B (2020) 'Measuring and quantifying greenhouse gas emissions from agricultural activities' In: Climate change and agriculture. Burleigh Dodds Science Publishing. |
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| Professor Jeremy Simpson | |
| Chalkley AS; Kelly S; Mysior MM; Simpson JC (2020) 'High‐Throughput Automated Subcellular Localisation' Wiley. , pp.103-112 |
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| Professor Emma Teeling | |
| Carr MJ; Gonzalez G; Teeling EC; Sawa H (2020) 'Bat Polyomaviruses: A Challenge to the Strict Host-Restriction Paradigm within the Mammalian Polyomaviridae' In: Bats and Viruses: Current Research and Future Trends. Caister Academic Press. |
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| Dr Jan-Robert Baars | |
| Minchin D; Baars J-R (2020) 'The water fern Azolla filiculoides Lam. (Azollaceae): from well-established to disappeared (H9)'. The Irish naturalists' journal 37 (1) :14-17. | |
| Mr Bernard Ball | |
| Atkinson S; Carlsson JEL; Ball B; Kelly-Quinn M; Carlsson J (2019) 'Field application of an eDNA assay for the threatened white-clawed crayfish Austropotamobius pallipes'. Freshwater Science 38 (3) :503-509. |
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| Williams MA; O'Grady J; Ball B; Carlsson J; de Eyto E; McGinnity P; Jennings E; Regan F; Parle-McDermott A (2019) 'The application of CRISPR-Cas for single species identification from environmental DNA'. Molecular Ecology Resources 19 (5) :1106-1114. |
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| Dr Samir Belhout | |
| Belhout SA; Baptista FR; Devereux SJ; Parker AW; Ward AD; Quinn SJ (2019) 'Preparation of polymer gold nanoparticle composites with tunable plasmon coupling and their application as SERS substrates'. Nanoscale 11 (42) :19884-19894. |
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| Bennie L; Belhout SA; Quinn SJ; Coulter JA (2020) 'Polymer-Supported Gold Nanoparticle Radiosensitizers with Enhanced Cellular Uptake Efficiency and Increased Cell Death in Human Prostate Cancer Cells'. ACS Applied Nano Materials 3 (4) :3157-3162. |
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| Professor Thomas Bolger | |
| Caruso T; Melecis V; Kagainis U; Bolger T (2020) 'Population asynchrony alone does not explain stability in species-rich soil animal assemblages: The stabilizing role of forest age on oribatid mite communities'. Journal of Animal Ecology 89 (6) :1520-1531. |
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| Harris M; Cave C; Foley K; Bolger T; Hochstrasser T (2019) 'Urbanisation of protected areas within the European Union-An Analysis of UNESCO biospheres and the need for new strategies'. Sustainability (Switzerland) 11 (21) |
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| Phillips HRP; Guerra CA; Bartz MLC; Briones MJI; Brown G; Crowther TW; Ferlian O; Gongalsky KB; Van Den Hoogen J; Krebs J (2019) 'Global distribution of earthworm diversity'. Science 366 (6464) :480-485. |
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| Schmeltz RM; Klinth MJ; Wisdom R; Bolger T (2020) 'Astacopsidrilus hibernicus sp. nov. (Phreodrilidae, Oligochaeta, Annelida) from Irish peatlands'. Zoosymposia 17 :34-44. |
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| Seniczak A; Bolger T; Roth S; Seniczak S; Djursvoll P; Jordal BH (2019) 'Diverse mite communities (Acari : Oribatida, Mesostigmata) from a broadleaf forest in western Norway.'. Annales Zoologici Fennici 56 :121-136. | |
| Dr Paul Brooks | |
| Birch GF; Lee JH; Tanner E; Fortune J; Munksgaard N; Whitehead J; Coughanowr C; Agius J; Chrispijn J; Taylor U (2020) 'Sediment metal enrichment and ecological risk assessment of ten ports and estuaries in the World Harbours Project'. Marine Pollution Bulletin 155 |
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| Brooks PR; Crowe TP (2019) 'Combined Effects of Multiple Stressors: New Insights Into the Influence of Timing and Sequence'. Frontiers in Ecology and Evolution 7 |
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| Strain EMA; Steinberg PD; Vozzo M; Johnston EL; Abbiati M; Aguilera MA; Airoldi L; Aguirre JD; Ashton G; Bernardi M (2020) 'A global analysis of complexity–biodiversity relationships on marine artificial structures'. Global Ecology and Biogeography |
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| Valdor PF; Gómez AG; Juanes JA; Kerléguer C; Steinberg P; Tanner E; MacLeod C; Knights AM; Seitz RD; Airoldi L (2019) 'A global atlas of the environmental risk of marinas on water quality'. Marine Pollution Bulletin 149 |
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| Assoc Professor Jens Carlsson | |
| Atkinson S; Bruen M; O' Sullivan JJ; Turner JN; Ball B; Carlsson J; Bullock C; Casserly CM; Kelly-Quinn M (2020) 'An inspection-based assessment of obstacles to salmon, trout, eel and lamprey migration and river channel connectivity in Ireland'. Science of the Total Environment 719 |
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| Atkinson S; Carlsson JEL; Ball B; Kelly-Quinn M; Carlsson J (2019) 'Field application of an eDNA assay for the threatened white-clawed crayfish Austropotamobius pallipes'. Freshwater Science 38 (3) :503-509. |
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| Bennion M; Morrison L; Brophy D; Carlsson J; Abrahantes JC; Graham CT (2019) 'Trace element fingerprinting of blue mussel (Mytilus edulis)shells and soft tissues successfully reveals harvesting locations'. Science of the Total Environment 685 :50-58. |
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| Fernandes DM; Mittnik A; Olalde I; Lazaridis I; Cheronet O; Rohland N; Mallick S; Bernardos R; Broomandkhoshbacht N; Carlsson J (2020) 'Author Correction: The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean (Nature Ecology & Evolution, (2020), 4, 3, (334-345), 10.1038/s41559-020-1102-0)'. Nature Ecology and Evolution 4 (5) :764. |
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| Fernandes DM; Mittnik A; Olalde I; Lazaridis I; Cheronet O; Rohland N; Mallick S; Bernardos R; Broomandkhoshbacht N; Carlsson J (2020) 'The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean'. Nature Ecology and Evolution 4 (3) :334-345. |
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| Lynch SA; Lepée-Rivero S; Kelly R; Quinn E; Coghlan A; Bookelaar B; Morgan E; Finarelli JA; Carlsson J; Culloty SC (2020) 'Detection of haplosporidian protistan parasites supports an increase to their known diversity, geographic range and bivalve host specificity'. Parasitology 147 (5) :584-592. |
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| Rincón-Tomás B; González FJ; Somoza L; Sauter K; Madureira P; Medialdea T; Carlsson J; Reitner J; Hoppert M (2020) 'Siboglinidae tubes as an additional niche for microbial communities in the Gulf of Cádiz—A microscopical appraisal'. Microorganisms 8 (3) |
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| Rotter A; Bacu A; Barbier M; Bertoni F; Bones AM; Cancela ML; Carlsson J; Carvalho MF; Cegłowska M; Dalay MC (2020) 'A New Network for the Advancement of Marine Biotechnology in Europe and Beyond'. Frontiers in Marine Science 7 |
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| Tighe AJ; Overby S; Thurman K; Gandola R; Fulanda B; Byrne J; Carlsson J (2020) 'Investigating a simplified method for noninvasive genetic sampling in East African mammals using silica dried scat swabs'. Ecology and Evolution 10 (7) :3330-3337. |
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| Van Dover CL; Colaço A; Collins PC; Croot P; Metaxas A; Murton BJ; Swaddling A; Boschen-Rose RE; Carlsson J; Cuyvers L (2020) 'Research is needed to inform environmental management of hydrothermally inactive and extinct polymetallic sulfide (PMS) deposits'. Marine Policy |
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| Williams MA; O'Grady J; Ball B; Carlsson J; de Eyto E; McGinnity P; Jennings E; Regan F; Parle-McDermott A (2019) 'The application of CRISPR-Cas for single species identification from environmental DNA'. Molecular Ecology Resources 19 (5) :1106-1114. |
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| Yearsley JM; Salmanidou DM; Carlsson J; Burns D; Van Dover CL (2020) 'Biophysical models of persistent connectivity and barriers on the northern Mid-Atlantic Ridge'. Deep-Sea Research Part II: Topical Studies in Oceanography |
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| Dr Tancredi Caruso | |
| Archer SDJ; Lee KC; Caruso T; King-Miaow K; Harvey M; Huang D; Wainwright BJ; Pointing SB (2020) 'Air mass source determines airborne microbial diversity at the ocean–atmosphere interface of the Great Barrier Reef marine ecosystem'. ISME Journal 14 (3) :871-876. |
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| Bardgett RD; Caruso T (2020) 'Soil microbial community responses to climate extremes: Resistance, resilience and transitions to alternative states'. Philosophical Transactions of the Royal Society B: Biological Sciences 375 (1794) |
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| Bergami E; Rota E; Caruso T; Birarda G; Vaccari L; Corsi I (2020) 'Plastics everywhere: first evidence of polystyrene fragments inside the common Antarctic collembolan Cryptopygus antarcticus: Microplastics in Antarctic collembola'. Biology Letters 16 (6) |
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| Caruso T; Hogg ID; Nielsen UN; Bottos EM; Lee CK; Hopkins DW; Cary SC; Barrett JE; Green TGA; Storey BC (2019) 'Nematodes in a polar desert reveal the relative role of biotic interactions in the coexistence of soil animals'. Communications Biology 2 (1) |
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| Caruso T; Melecis V; Kagainis U; Bolger T (2020) 'Population asynchrony alone does not explain stability in species-rich soil animal assemblages: The stabilizing role of forest age on oribatid mite communities'. Journal of Animal Ecology 89 (6) :1520-1531. |
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| Chomel M; Lavallee JM; Alvarez-Segura N; de Castro F; Rhymes JM; Caruso T; de Vries FT; Baggs EM; Emmerson MC; Bardgett RD (2019) 'Drought decreases incorporation of recent plant photosynthate into soil food webs regardless of their trophic complexity'. Global Change Biology 25 (10) :3549-3561. |
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| Fornara DA; Flynn D; Caruso T (2020) 'Effects of nutrient fertilization on root decomposition and carbon accumulation in intensively managed grassland soils'. Ecosphere 11 (4) |
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| Fornara DA; Flynn D; Caruso T (2020) 'Improving phosphorus sustainability in intensively managed grasslands: The potential role of arbuscular mycorrhizal fungi'. Science of the Total Environment 706 |
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| Lee CK; Laughlin DC; Bottos EM; Caruso T; Joy K; Barrett JE; Brabyn L; Nielsen UN; Adams BJ; Wall DH (2019) 'Biotic interactions are an unexpected yet critical control on the complexity of an abiotically driven polar ecosystem'. Communications Biology 2 (1) |
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| Pecoraro L; Caruso T; Kumar Gupta V; Borris RP; Zhang YC; Cai L (2020) 'Analysis of macrofungal communities reveals a complex reciprocal influence between Mediterranean montane calcareous grassland and surrounding forest habitats'. Journal of Systematics and Evolution |
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| Schaefer I; Caruso T (2019) 'Oribatid mites show that soil food web complexity and close aboveground-belowground linkages emerged in the early Paleozoic'. Communications Biology 2 (1) |
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| Spaans F; Caruso T; Hammer EC; Montgomery I (2019) 'Trees in trimmed hedgerows but not tree health increase diversity of oribatid mite communities in intensively managed agricultural land'. Soil Biology and Biochemistry 138 |
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| Dr Simone Ciuti | |
| Bonnot NC; Couriot O; Berger A; Cagnacci F; Ciuti S; De Groeve JE; Gehr B; Heurich M; Kjellander P; Kröschel M (2020) 'Fear of the dark? Contrasting impacts of humans versus lynx on diel activity of roe deer across Europe'. Journal of Animal Ecology 89 (1) :132-145. |
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| Bowyer RT; McCullough DR; Rachlow JL; Ciuti S; Whiting JC (2020) 'Evolution of ungulate mating systems: Integrating social and environmental factors'. Ecology and Evolution 10 (11) :5160-5178. |
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| Brivio F; Zurmühl M; Grignolio S; von Hardenberg J; Apollonio M; Ciuti S (2019) 'Forecasting the response to global warming in a heat-sensitive species'. Scientific Reports 9 (1) |
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| Gehr B; Bonnot NC; Heurich M; Cagnacci F; Ciuti S; Hewison AJM; Gaillard JM; Ranc N; Premier J; Vogt K (2020) 'Stay home, stay safe—Site familiarity reduces predation risk in a large herbivore in two contrasting study sites'. Journal of Animal Ecology 89 (6) :1329-1339. |
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| Hart EE; Fennessy J; Chari S; Ciuti S; Cherry M (2020) 'Habitat heterogeneity and social factors drive behavioral plasticity in giraffe herd-size dynamics'. Journal of Mammalogy 101 (1) :248-258. |
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| Murphy KJ; Ciuti S; Kane A (2020) 'An introduction to agent-based models as an accessible surrogate to field-based research and teaching'. Ecology and Evolution |
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| Dr Grace Cott | |
| Cott GM; Jansen MAK; Megonigal JP (2020) 'Uptake of organic nitrogen by coastal wetland plants under elevated CO |
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| Professor Tasman Crowe | |
| Birch GF; Lee JH; Tanner E; Fortune J; Munksgaard N; Whitehead J; Coughanowr C; Agius J; Chrispijn J; Taylor U (2020) 'Sediment metal enrichment and ecological risk assessment of ten ports and estuaries in the World Harbours Project'. Marine Pollution Bulletin 155 |
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| Brannigan J; Ryfield F; Crowe T; Cabana D (2019) '“The Languo of Flows”'. Environmental Humanities 11 (2) :280-301. |
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| Brooks PR; Crowe TP (2019) 'Combined Effects of Multiple Stressors: New Insights Into the Influence of Timing and Sequence'. Frontiers in Ecology and Evolution 7 |
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| Cabana D; Ryfield F; Crowe TP; Brannigan J (2020) 'Evaluating and communicating cultural ecosystem services'. Ecosystem Services 42 |
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| Mayer-Pinto M; Ledet J; Crowe TP; Johnston EL (2020) 'Sublethal effects of contaminants on marine habitat-forming species: a review and meta-analysis'. Biological Reviews |
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| Strain EMA; Steinberg PD; Vozzo M; Johnston EL; Abbiati M; Aguilera MA; Airoldi L; Aguirre JD; Ashton G; Bernardi M (2020) 'A global analysis of complexity–biodiversity relationships on marine artificial structures'. Global Ecology and Biogeography |
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| Valdor PF; Gómez AG; Juanes JA; Kerléguer C; Steinberg P; Tanner E; MacLeod C; Knights AM; Seitz RD; Airoldi L (2019) 'A global atlas of the environmental risk of marinas on water quality'. Marine Pollution Bulletin 149 |
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| Professor Fiona Doohan | |
| Brennan CJ; Benbow HR; Mullins E; Doohan FM (2019) 'A review of the known unknowns in the early stages of septoria tritici blotch disease of wheat'. Plant Pathology 68 (8) :1427-1438. |
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| Brennan CJ; Zhou B; Benbow HR; Ajaz S; Karki SJ; Hehir JG; O’Driscoll A; Feechan A; Mullins E; Doohan FM (2020) 'Taxonomically Restricted Wheat Genes Interact With Small Secreted Fungal Proteins and Enhance Resistance to Septoria Tritici Blotch Disease'. Frontiers in Plant Science 11 |
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| Isidro-Sánchez J; D'Arcy Cusack K; Verheecke-Vaessen C; Kahla A; Bekele W; Doohan F; Magan N; Medina A (2020) 'Genome-wide association mapping of Fusarium langsethiae infection and mycotoxin accumulation in oat (Avena sativa L.)'. Plant Genome 13 (2) |
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| Mascia T; Labarile R; Doohan F; Gallitelli D (2019) 'Tobacco mosaic virus infection triggers an RNAi-based response in Phytophthora infestans'. Scientific Reports 9 (1) |
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| Perochon A; Kahla A; Vranić M; Jia J; Malla KB; Craze M; Wallington E; Doohan FM (2019) 'A wheat NAC interacts with an orphan protein and enhances resistance to Fusarium head blight disease'. Plant Biotechnology Journal 17 (10) :1892-1904. |
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| Perochon A; Váry Z; Malla KB; Halford NG; Paul MJ; Doohan FM (2019) 'The wheat SnRK1α family and its contribution to Fusarium toxin tolerance'. Plant Science 288 |
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| Rahman A; Doohan F; Mullins E (2020) 'Quantification of in planta Zymoseptoria tritici progression through different infection phases and related association with components of aggressiveness'. Phytopathology 110 (6) :1208-1215. |
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| Zhou B; Benbow HR; Brennan CJ; Arunachalam C; Karki SJ; Mullins E; Feechan A; Burke JI; Doohan FM (2020) 'Wheat Encodes Small, Secreted Proteins That Contribute to Resistance to Septoria Tritici Blotch'. Frontiers in Genetics 11 |
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| Zuniga-Soto E; Fitzpatrick DA; Doohan FM; Mullins E (2019) 'Insights into the transcriptomic response of the plant engineering bacterium Ensifer adhaerens OV14 during transformation'. Scientific Reports 9 (1) |
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| Assoc Professor Evelyn Doyle | |
| Ikoyi I; Fowler A; Storey S; Doyle E; Schmalenberger A (2020) 'Sulfate fertilization supports growth of ryegrass in soil columns but changes microbial community structures and reduces abundances of nematodes and arbuscular mycorrhiza'. Science of the Total Environment 704 |
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| McGee CF; Clipson N; Doyle E (2020) 'Exploring the Influence of Raising Soil pH on the Ecotoxicological Effects of Silver Nanoparticles and Micron Particles on Soil Microbial Communities'. Water, Air, and Soil Pollution 231 (4) |
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| Randall KC; Brennan F; Clipson N; Creamer RE; Griffiths BS; Storey S; Doyle E (2020) 'An Assessment of Climate Induced Increase in Soil Water Availability for Soil Bacterial Communities Exposed to Long-Term Differential Phosphorus Fertilization'. Frontiers in Microbiology 11 |
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| Zhu F; Doyle E; Zhu C; Zhou D; Gu C; Gao J (2020) 'Metagenomic analysis exploring microbial assemblages and functional genes potentially involved in di (2-ethylhexyl) phthalate degradation in soil'. Science of the Total Environment 715 |
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| Dr Elke Eichelmann | |
| Baldocchi DD; Ryu Y; Dechant B; Eichelmann E; Hemes K; Ma S; Sanchez CR; Shortt R; Szutu D; Valach A (2020) 'Outgoing Near-Infrared Radiation From Vegetation Scales With Canopy Photosynthesis Across a Spectrum of Function, Structure, Physiological Capacity, and Weather'. Journal of Geophysical Research: Biogeosciences 125 (7) |
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| Chamberlain SD; Hemes KS; Eichelmann E; Szutu DJ; Verfaillie JG; Baldocchi DD (2020) 'Effect of Drought-Induced Salinization on Wetland Methane Emissions, Gross Ecosystem Productivity, and Their Interactions'. Ecosystems 23 (3) :675-688. |
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| Dr Edward Farrell | |
| Maduna SN; Hull KL; Farrell ED; Boomer JJ; Veríssimo ANA; Marino IAM; Mazzoldi C; Zane L; Wintner SP; Chesalin MV (2020) 'Historical biogeography of smoothhound sharks (genus Mustelus) of Southern Africa reveals multiple dispersal events from the Northern Hemisphere'. Systematics and Biodiversity :1-13. |
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| Dr John Finarelli | |
| Coates MI; Tietjen K; Olsen AM; Finarelli JA (2019) 'High-performance suction feeding in an early elasmobranch'. Science Advances 5 (9) |
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| Foley NM; Petit EJ; Brazier T; Finarelli JA; Hughes GM; Touzalin F; Puechmaille SJ; Teeling EC (2020) 'Drivers of longitudinal telomere dynamics in a long-lived bat species, Myotis myotis'. Molecular Ecology 29 (16) :2963-2977. |
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| Lynch SA; Lepée-Rivero S; Kelly R; Quinn E; Coghlan A; Bookelaar B; Morgan E; Finarelli JA; Carlsson J; Culloty SC (2020) 'Detection of haplosporidian protistan parasites supports an increase to their known diversity, geographic range and bivalve host specificity'. Parasitology 147 (5) :584-592. |
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| Dr Wieland Fricke | |
| Armand T; Cullen M; Boiziot F; Li L; Fricke W (2019) 'Cortex cell hydraulic conductivity, endodermal apoplastic barriers and root hydraulics change in barley (Hordeum vulgare L.) in response to a low supply of N and P'. Annals of Botany 124 (6) :1091-1107. |
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| Fricke W (2020) 'Energy costs of salinity tolerance in crop plants: night-time transpiration and growth'. New Phytologist 225 (3) :1152-1165. |
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| Li L; Pan S; Melzer R; Fricke W (2020) 'Apoplastic barriers, aquaporin gene expression and root and cell hydraulic conductivity in phosphate-limited sheepgrass plants'. Physiologia Plantarum 168 (1) :118-132. |
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| Munns R; Day DA; Fricke W; Watt M; Arsova B; Barkla BJ; Bose J; Byrt CS; Chen ZH; Foster KJ (2020) 'Energy costs of salt tolerance in crop plants'. New Phytologist 225 (3) :1072-1090. |
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| Dr Tamara Hochstrasser | |
| Harris M; Cave C; Foley K; Bolger T; Hochstrasser T (2019) 'Urbanisation of protected areas within the European Union-An Analysis of UNESCO biospheres and the need for new strategies'. Sustainability (Switzerland) 11 (21) |
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| Mr Zixia Huang | |
| Huang Z; Whelan CV; Dechmann D; Teeling EC (2020) 'Genetic variation between long-lived versus short-lived bats illuminates the molecular signatures of longevity'. Aging 12 (16) :15962-15977. |
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| Jebb D; Huang Z; Pippel M; Hughes GM; Lavrichenko K; Devanna P; Winkler S; Jermiin LS; Skirmuntt EC; Katzourakis A (2020) 'Six reference-quality genomes reveal evolution of bat adaptations'. Nature 583 (7817) :578-584. |
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| Zeng Z; Tan Q; Huang Z; Shi B; Ke C (2019) 'Differential Gene expression related to morphological variation in the adductor muscle tissues of diploid and triploid fujian oysters, Crassostrea angulata'. Aquaculture Research 50 (12) :3567-3578. |
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| Dr Graham Hughes | |
| Foley NM; Petit EJ; Brazier T; Finarelli JA; Hughes GM; Touzalin F; Puechmaille SJ; Teeling EC (2020) 'Drivers of longitudinal telomere dynamics in a long-lived bat species, Myotis myotis'. Molecular Ecology 29 (16) :2963-2977. |
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| Jebb D; Huang Z; Pippel M; Hughes GM; Lavrichenko K; Devanna P; Winkler S; Jermiin LS; Skirmuntt EC; Katzourakis A (2020) 'Six reference-quality genomes reveal evolution of bat adaptations'. Nature 583 (7817) :578-584. |
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| Professor Lars Jermiin | |
| Crotty SM; Minh BQ; Bean NG; Holland BR; Tuke J; Jermiin LS; Haeseler AV (2020) 'GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments'. Systematic Biology 69 (2) :249-264. |
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| Dziak JJ; Coffman DL; Lanza ST; Li R; Jermiin LS (2020) 'Sensitivity and specificity of information criteria'. Briefings in Bioinformatics 21 (2) :553-565. |
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| Jebb D; Huang Z; Pippel M; Hughes GM; Lavrichenko K; Devanna P; Winkler S; Jermiin LS; Skirmuntt EC; Katzourakis A (2020) 'Six reference-quality genomes reveal evolution of bat adaptations'. Nature 583 (7817) :578-584. |
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| Jermiin LS; Catullo RA; Holland BR (2020) 'A new phylogenetic protocol: dealing with model misspecification and confirmation bias in molecular phylogenetics'. NAR Genomics and Bioinformatics 2 (2) |
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| Schilling S; Kennedy A; Pan S; Jermiin LS; Melzer R (2020) 'Genome-wide analysis of MIKC-type MADS-box genes in wheat: pervasive duplications, functional conservation and putative neofunctionalization'. New Phytologist 225 (1) :511-529. |
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| Wong TKF; Kalyaanamoorthy S; Meusemann K; Yeates DK; Misof B; Jermiin LS (2020) 'A minimum reporting standard for multiple sequence alignments'. NAR Genomics and Bioinformatics 2 (2) |
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| Dr Rory Johnson | |
| Bergadà-Pijuan J; Pulido-Quetglas C; Vancura A; Johnson R (2020) 'CASPR, an analysis pipeline for single and paired guide RNA CRISPR screens, reveals optimal target selection for long non-coding RNAs'. Bioinformatics 36 (6) :1673-1680. |
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| Bracher L; Ferro I; Pulido-Quetglas C; Ruepp MD; Johnson R; Polacek N (2020) 'Human vtRNA1-1 levels modulate signaling pathways and regulate apoptosis in human cancer cells'. Biomolecules 10 (4) |
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| Rheinbay E; Nielsen MM; Abascal F; Wala JA; Shapira O; Tiao G; Hornshøj H; Hess JM; Juul RI; Lin Z (2020) 'Analyses of non-coding somatic drivers in 2,658 cancer whole genomes'. Nature 578 (7793) :102-111. |
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| Dr Julia Jones | |
| Jones JC; Du ZG; Bernstein R; Meyer M; Hoppe A; Schilling E; Ableitner M; Juling K; Dick R; Strauss AS (2020) 'Tool for genomic selection and breeding to evolutionary adaptation: Development of a 100K single nucleotide polymorphism array for the honey bee'. Ecology and Evolution 10 (13) :6246-6256. |
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| Jones JC; Wallberg A; Christmas MJ; Kapheim KM; Webster MT; Singh N (2019) 'Extreme Differences in Recombination Rate between the Genomes of a Solitary and a Social Bee'. Molecular Biology and Evolution 36 (10) :2277-2291. |
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| Dr Joanna Kacprzyk | |
| Burke R; Schwarze J; Sherwood OL; Jnaid Y; McCabe PF; Kacprzyk J (2020) 'Stressed to Death: The Role of Transcription Factors in Plant Programmed Cell Death Induced by Abiotic and Biotic Stimuli'. Frontiers in Plant Science 11 |
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| Kacprzyk J; Parsons M; Maguire PB; Stewart GS (2019) 'Examining gender effects in different types of undergraduate science assessment'. Irish Educational Studies 38 (4) :467-480. |
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| Dr Amal Kahla | |
| Isidro-Sánchez J; D'Arcy Cusack K; Verheecke-Vaessen C; Kahla A; Bekele W; Doohan F; Magan N; Medina A (2020) 'Genome-wide association mapping of Fusarium langsethiae infection and mycotoxin accumulation in oat (Avena sativa L.)'. Plant Genome 13 (2) |
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| Perochon A; Kahla A; Vranić M; Jia J; Malla KB; Craze M; Wallington E; Doohan FM (2019) 'A wheat NAC interacts with an orphan protein and enhances resistance to Fusarium head blight disease'. Plant Biotechnology Journal 17 (10) :1892-1904. |
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| Dr Adam Kane | |
| Critchley EJ; Grecian WJ; Bennison A; Kane A; Wischnewski S; Cañadas A; Tierney D; Quinn JL; Jessopp MJ (2020) 'Assessing the effectiveness of foraging radius models for seabird distributions using biotelemetry and survey data'. Ecography 43 (2) :184-196. |
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| Fernández-Bellon D; Kane A (2020) 'Unpaid ‘CV-boosting’ opportunities undermine efforts to reduce pressure and increase diversity of early-career researchers'. Nature Ecology and Evolution |
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| Kane A; Pirotta E; Wischnewski S; Critchley EJ; Bennison A; Jessopp M; Quinn JL (2020) 'Spatio-Temporal patterns of foraging behaviour in a wide-ranging seabird reveal the role of primary productivity in locating prey'. Marine Ecology Progress Series 646 :175-188. |
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| Murphy KJ; Ciuti S; Kane A (2020) 'An introduction to agent-based models as an accessible surrogate to field-based research and teaching'. Ecology and Evolution |
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| Assoc Professor Mary Kelly-Quinn | |
| Aschale M; Sileshi Y; Kelly-Quinn M (2019) 'Health risk assessment of potentially toxic elements via consumption of vegetables irrigated with polluted river water in Addis Ababa, Ethiopia'. Environmental Systems Research 8 (1) |
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| Atkinson S; Bruen M; O' Sullivan JJ; Turner JN; Ball B; Carlsson J; Bullock C; Casserly CM; Kelly-Quinn M (2020) 'An inspection-based assessment of obstacles to salmon, trout, eel and lamprey migration and river channel connectivity in Ireland'. Science of the Total Environment 719 |
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| Atkinson S; Carlsson JEL; Ball B; Kelly-Quinn M; Carlsson J (2019) 'Field application of an eDNA assay for the threatened white-clawed crayfish Austropotamobius pallipes'. Freshwater Science 38 (3) :503-509. |
|
| Casserly CM; Turner JN; O'Sullivan JJ; Bruen M; Bullock C; Atkinson S; Kelly-Quinn M (2020) 'Impact of low-head dams on bedload transport rates in coarse-bedded streams'. Science of the Total Environment 716 |
|
| Davis SJ; Ó hUallacháin D; Mellander PE; Matthaei CD; Piggott JJ; Kelly-Quinn M (2019) 'Chronic nutrient inputs affect stream macroinvertebrate communities more than acute inputs: An experiment manipulating phosphorus, nitrogen and sediment'. Science of the Total Environment 683 :9-20. |
|
| Kelly-Quinn M; Feeley H; Bradley C (2020) 'STATUS OF FRESHWATER INVERTEBRATE BIODIVERSITY IN IRELAND’S RIVERS – TIME TO TAKE STOCK'. Biology and Environment: Proceedings of the Royal Irish Academy 120 (2) :51-68. |
|
| Riis T; Kelly-Quinn M; Aguiar FC; Manolaki P; Bruno D; Bejarano MD; Clerici N; Fernandes MR; Franco JC; Pettit N (2020) 'Global overview of ecosystem services provided by riparian vegetation'. BioScience 70 (6) :501-514. |
|
| Dr Olga Lastovetsky | |
| Carter ME; Carpenter SCD; Dubrow ZE; Sabol MR; Rinaldi FC; Lastovetsky OA; Mondo SJ; Pawlowska TE; Bogdanove AJ (2020) 'A TAL effector-like protein of an endofungal bacterium increases the stress tolerance and alters the transcriptome of the host'. Proceedings of the National Academy of Sciences of the United States of America 117 (29) :17122-17129. |
|
| Mr Stephen Mahony | |
| Mahony S; Kamei RG; Teeling EC; Biju SD (2020) 'Taxonomic review of the Asian Horned Frogs (Amphibia: Megophrys Kuhl & Van Hasselt) of Northeast India and Bangladesh previously misidentified as M. parva (Boulenger), with descriptions of three new species'. Journal of Natural History 54 (43922) :119-194. |
|
| Mr Keshav Malla | |
| Perochon A; Váry Z; Malla KB; Halford NG; Paul MJ; Doohan FM (2019) 'The wheat SnRK1α family and its contribution to Fusarium toxin tolerance'. Plant Science 288 |
|
| Assoc Professor Paul McCabe | |
| Burke R; Schwarze J; Sherwood OL; Jnaid Y; McCabe PF; Kacprzyk J (2020) 'Stressed to Death: The Role of Transcription Factors in Plant Programmed Cell Death Induced by Abiotic and Biotic Stimuli'. Frontiers in Plant Science 11 |
|
| Schilling S; McCabe PF; Melzer R (2020) 'Love is in the air: Ethylene and sex determination in Cucurbita pepo'. Journal of Experimental Botany 71 (1) :4-6. |
|
| Schilling S; Melzer R; McCabe PF (2020) 'Cannabis sativa'. Current Biology 30 (1) :R8-R9. |
|
| Dr Rainer Melzer | |
| Li L; Pan S; Melzer R; Fricke W (2020) 'Apoplastic barriers, aquaporin gene expression and root and cell hydraulic conductivity in phosphate-limited sheepgrass plants'. Physiologia Plantarum 168 (1) :118-132. |
|
| Schilling S; Kennedy A; Pan S; Jermiin LS; Melzer R (2020) 'Genome-wide analysis of MIKC-type MADS-box genes in wheat: pervasive duplications, functional conservation and putative neofunctionalization'. New Phytologist 225 (1) :511-529. |
|
| Schilling S; McCabe PF; Melzer R (2020) 'Love is in the air: Ethylene and sex determination in Cucurbita pepo'. Journal of Experimental Botany 71 (1) :4-6. |
|
| Schilling S; Melzer R; McCabe PF (2020) 'Cannabis sativa'. Current Biology 30 (1) :R8-R9. |
|
| Varotto S; Tani E; Abraham E; Krugman T; Kapazoglou A; Melzer R; Radanović A; Miladinović D (2020) 'Epigenetics: possible applications in climate-smart crop breeding.'. Journal of experimental botany 71 (17) :5223-5236. |
|
| Professor Christoph Mueller | |
| Bei Q; Moser G; Wu X; Müller C; Liesack W (2019) 'Metatranscriptomics reveals climate change effects on the rhizosphere microbiomes in European grassland'. Soil Biology and Biochemistry 138 |
|
| Bracken CJ; Lanigan GJ; Richards KG; Müller C; Tracy SR; Grant J; Krol DJ; Sheridan H; Lynch MB; Grace C (2020) 'Sward composition and soil moisture conditions affect nitrous oxide emissions and soil nitrogen dynamics following urea-nitrogen application'. Science of the Total Environment 722 |
|
| Castellano-Hinojosa A; Charteris AF; Müller C; Jansen-Willems A; González-López J; Bedmar EJ; Carrillo P; Cárdenas LM (2020) 'Occurrence and 15N-quantification of simultaneous nitrification and denitrification in N-fertilised soils incubated under oxygen-limiting conditions'. Soil Biology and Biochemistry 143 |
|
| Dan X; Chen Z; Dai S; He X; Cai Z; Zhang J; Müller C (2019) 'Effects of changing temperature on gross N transformation rates in acidic subtropical forest soils'. Forests 10 (10) |
|
| Han X; Xu C; Wang Y; Huang D; Fan Q; Xin G; Müller C (2019) 'Dynamics of arbuscular mycorrhizal fungi in relation to root colonization, spore density, and soil properties among different spreading stages of the exotic plant threeflower beggarweed (Desmodium triflorum) in a Zoysia tenuifolia lawn'. Weed Science 67 (6) :689-701. |
|
| He X; Chi Q; Cai Z; Cheng Y; Zhang J; Müller C (2020) '15N tracing studies including plant N uptake processes provide new insights on gross N transformations in soil-plant systems'. Soil Biology and Biochemistry 141 |
|
| Hoekstra NJ; Schulte RPO; Forrestal PJ; Hennessy D; Krol DJ; Lanigan GJ; Müller C; Shalloo L; Wall DP; Richards KG (2020) 'Scenarios to limit environmental nitrogen losses from dairy expansion'. Science of the Total Environment 707 |
|
| Liu S; Chi Q; Shan J; Zhu B; Zhang X; Cheng Y; Cai Z; Zhang J; Yan X; Müller C (2020) 'Evaluation of the effectiveness of N process inhibitors in paddy rice via a 15N tracing approach'. Soil Biology and Biochemistry 147 |
|
| Liu X; Guo C; He S; Zhu H; Li J; Yu Z; Qi Y; He J; Zhang J; Müller C (2020) 'Divergent gross nitrogen transformation paths in the topsoil and subsoil between abandoned and agricultural cultivation land in irrigated areas'. Science of the Total Environment 716 |
|
| O'Neill RM; Girkin NT; Krol DJ; Wall DP; Brennan FP; Lanigan GJ; Renou-Wilson F; Müller C; Richards KG (2020) 'The effect of carbon availability on N |
|
| Obermeier WA; Lehnert LW; Pohl MJ; Makowski Gianonni S; Silva B; Seibert R; Laser H; Moser G; Müller C; Luterbacher J (2019) 'Grassland ecosystem services in a changing environment: The potential of hyperspectral monitoring'. Remote Sensing of Environment 232 |
|
| Shi X; Wang J; Müller C; Hu HW; He JZ; Wang J; Huang Z (2020) 'Dissimilatory nitrate reduction to ammonium dominates soil nitrate retention capacity in subtropical forests'. Biology and Fertility of Soils 56 (6) :785-797. |
|
| Sun X; Liang B; Wang J; Cheng Y; Chang SX; Cai Z-C; Müller C; Zhang J-B (2020) 'Soil N transformation rates are not linked to fertilizer N losses in vegetable soils with high N input'. Soil and Tillage Research 202 :104651-104651. |
|
| Terrer C; Jackson RB; Prentice IC; Keenan TF; Kaiser C; Vicca S; Fisher JB; Reich PB; Stocker BD; Hungate BA (2019) 'Nitrogen and phosphorus constrain the CO |
|
| Zhang Y; Cai Z; Zhang J; Müller C (2020) 'C:N ratio is not a reliable predictor of N |
|
| Zhang Y; Wang J; Dai S; Sun Y; Chen J; Cai Z; Zhang J; Müller C (2019) 'Temperature effects on N |
|
| Zhang Y; Zheng X; Guo B; Yu J; Carswell A; Misselbrook T; Zhang J; Müller C; Chen D; Ding H (2020) 'Mechanisms behind the inhibition of autotrophic nitrification following rice-straw incorporation in a subtropical acid soil'. Soil and Tillage Research 196 |
|
| Zheng X; Lin C; Guo B; Yu J; Ding H; Peng S; Zhang J; Ireland E; Chen D; Müller C (2020) 'Mechanisms behind soil N dynamics following cover restoration in degraded land in subtropical China'. Journal of Soils and Sediments 20 (4) :1897-1905. |
|
| Dr Sonia Negrao | |
| Gutaker RM; Groen SC; Bellis ES; Choi JY; Pires IS; Bocinsky RK; Slayton ER; Wilkins O; Castillo CC; Negrão S (2020) 'Genomic history and ecology of the geographic spread of rice'. Nature Plants 6 (5) :492-502. |
|
| Johansen K; Morton MJL; Malbeteau Y; Aragon B; Al-Mashharawi S; Ziliani MG; Angel Y; Fiene G; Negrão S; Mousa MAA (2020) 'Predicting Biomass and Yield in a Tomato Phenotyping Experiment Using UAV Imagery and Random Forest'. Frontiers in Artificial Intelligence 3 |
|
| Negrão S; Julkowska MM (2020) 'Plant Phenotyping'. :1-14. |
|
| Pailles Y; Awlia M; Julkowska M; Passone L; Zemmouri K; Negrão S; Schmöckel SM; Tester M (2020) 'Diverse traits contribute to salinity tolerance of wild tomato seedlings from the galapagos islands'. Plant Physiology 182 (1) :534-546. |
|
| Saade S; Brien C; Pailles Y; Berger B; Shahid M; Russell J; Waugh R; Negrão S; Tester M (2020) 'Dissecting new genetic components of salinity tolerance in two-row spring barley at the vegetative and reproductive stages'. PLoS ONE 15 (44019) |
|
| Assoc Professor Carl Ng | |
| Belton S; Ng CKY (2020) 'Plant Sphingolipids'. :1-10. |
|
| Hunt D; Ng C (2020) 'The future is bright for the next generation of plant scientists'. New Phytologist 225 :48-50. | |
| Professor Bruce Osborne | |
| Bond-Lamberty B; Christianson DS; Malhotra A; Pennington SC; Sihi D; AghaKouchak A; Anjileli H; Altaf Arain M; Armesto JJ; Ashraf S (2020) 'COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data'. Global Change Biology |
|
| Cordero Á; Garmendia I; Osborne BA (2019) 'Interspecific variations in the growth, water relations and photosynthetic responses of switchgrass genotypes to salinity targets salt exclusion for maximising bioenergy production'. Agriculture (Switzerland) 9 (9) |
|
| Khalil MI; Fornara DA; Osborne B (2020) 'Simulation and validation of long-term changes in soil organic carbon under permanent grassland using the DNDC model'. Geoderma 361 |
|
| Lucey F (2020) 'Horizon scanning of invasives in Ireland'. Management of Biological Invasions | |
| Lucy FE; Davis E; Anderson R; Booy O; Bradley K; Britton JR; Byrne C; Caffrey JM; Coughlan NE; Crane K (2020) 'Horizon scan of invasive alien species for the island of Ireland'. Management of Biological Invasions 11 (2) :155-177. |
|
| Mantoani MC; González AB; Sancho LG; Osborne BA (2020) 'Growth, phenology and N-utilization by invasive populations of Gunnera tinctoria'. Journal of Plant Ecology 13 (5) :589-600. |
|
| Osborne B; Thioune E-H; Strickler S; Gallagher T; Charpagne A; Decombes P; McCarthy J (2020) 'Temperature impacts the response of coffea canephora to decreasing soil water availability'. Tropical Plant Biology |
|
| Zou J; Osborne B (2020) 'No effect of warming and watering on soil nitrous oxide fluxes in a temperate sitka spruce forest ecosystem'. Journal of Integrative Environmental Sciences |
|
| Dr Alexandre Perochon | |
| Perochon A; Kahla A; Vranić M; Jia J; Malla KB; Craze M; Wallington E; Doohan FM (2019) 'A wheat NAC interacts with an orphan protein and enhances resistance to Fusarium head blight disease'. Plant Biotechnology Journal 17 (10) :1892-1904. |
|
| Perochon A; Váry Z; Malla KB; Halford NG; Paul MJ; Doohan FM (2019) 'The wheat SnRK1α family and its contribution to Fusarium toxin tolerance'. Plant Science 288 |
|
| Dr Antoinette Perry | |
| Connell SP; O'Reilly E; Tuzova A; Webb M; Hurst R; Mills R; Zhao F; Bapat B; Cooper CS; Perry AS (2020) 'Development of a multivariable risk model integrating urinary cell DNA methylation and cell-free RNA data for the detection of significant prostate cancer'. Prostate 80 (7) :547-558. |
|
| Connell SP; Yazbek-Hanna M; McCarthy F; Hurst R; Webb M; Curley H; Walker H; Mills R; Ball RY; Sanda MG (2019) 'A four-group urine risk classifier for predicting outcomes in patients with prostate cancer'. BJU International 124 (4) :609-620. |
|
| Connor AE; Jordan AC; Perry AS (2019) 'Holding a MIRror up to the robustness of the prostate cancer urinary transcriptome'. Translational Andrology and Urology 8 :S488-S490. |
|
| Drost FJH; Nieboer D; Morgan TM; Carroll PR; Roobol MJ; Trock B; Ehdaie B; Carroll P; Filson C; Kim J (2019) 'Predicting Biopsy Outcomes During Active Surveillance for Prostate Cancer: External Validation of the Canary Prostate Active Surveillance Study Risk Calculators in Five Large Active Surveillance Cohorts'. European Urology 76 (5) :693-702. |
|
| Silva R; Moran B; Russell NM; Fahey C; Vlajnic T; Manecksha RP; Finn SP; Brennan DJ; Gallagher WM; Perry AS (2020) 'Evaluating liquid biopsies for methylomic profiling of prostate cancer'. Epigenetics 15 (44018) :715-727. |
|
| Dr Cat Pschenyckyj | |
| Pschenyckyj CM; Clark JM; Shaw LJ; Griffiths RI; Evans CD (2020) 'Effects of acidity on dissolved organic carbon in organic soil extracts, pore water and surface litters.'. The Science of the total environment 703 :135585. |
|
| Dr Florence Renou-Wilson | |
| O'Neill RM; Girkin NT; Krol DJ; Wall DP; Brennan FP; Lanigan GJ; Renou-Wilson F; Müller C; Richards KG (2020) 'The effect of carbon availability on N |
|
| Dr Susanne Schilling | |
| Schilling S; Kennedy A; Pan S; Jermiin LS; Melzer R (2020) 'Genome-wide analysis of MIKC-type MADS-box genes in wheat: pervasive duplications, functional conservation and putative neofunctionalization'. New Phytologist 225 (1) :511-529. |
|
| Schilling S; McCabe PF; Melzer R (2020) 'Love is in the air: Ethylene and sex determination in Cucurbita pepo'. Journal of Experimental Botany 71 (1) :4-6. |
|
| Schilling S; Melzer R; McCabe PF (2020) 'Cannabis sativa'. Current Biology 30 (1) :R8-R9. |
|
| Professor Jeremy Simpson | |
| Cutrona MB; Simpson JC (2019) 'A High-Throughput Automated Confocal Microscopy Platform for Quantitative Phenotyping of Nanoparticle Uptake and Transport in Spheroids'. Small 15 (37) |
|
| Cutrona MB; Simpson JC (2019) 'Nanoparticles: A High‐Throughput Automated Confocal Microscopy Platform for Quantitative Phenotyping of Nanoparticle Uptake and Transport in Spheroids (Small 37/2019)'. Small 15 (37) :1970197-1970197. |
|
| De Santi C; Fernández Fernández E; Gaul R; Vencken S; Glasgow A; Oglesby IK; Hurley K; Hawkins F; Mitash N; Mu F (2020) 'Precise Targeting of miRNA Sites Restores CFTR Activity in CF Bronchial Epithelial Cells'. Molecular Therapy 28 (4) :1190-1199. |
|
| Fowler PC; Garcia-Pardo ME; Simpson JC; O’Sullivan NC (2019) 'NeurodegenERation: The Central Role for ER Contacts in Neuronal Function and Axonopathy, Lessons From Hereditary Spastic Paraplegias and Related Diseases'. Frontiers in Neuroscience 13 |
|
| Kaleel M; Zheng Y; Chen J; Feng X; Simpson JC; Pollastri G; Mooney C (2020) 'SCLpred-EMS: Subcellular localization prediction of endomembrane system and secretory pathway proteins by Deep N-to-1 Convolutional Neural Networks'. Bioinformatics 36 (11) :3343-3349. |
|
| Kuhns S; Seixas C; Pestana S; Tavares B; Nogueira R; Jacinto R; Ramalho JS; Simpson JC; Andersen JS; Echard A (2019) 'Rab35 controls cilium length, function and membrane composition'. EMBO Reports 20 (10) |
|
| Long M; Kranjc T; Mysior MM; Simpson JC (2020) 'RNA Interference Screening Identifies Novel Roles for RhoBTB1 and RhoBTB3 in Membrane Trafficking Events in Mammalian Cells.'. Cells 9 (5) |
|
| Melling GE; Carollo E; Conlon R; Simpson JC; Carter DRF (2019) 'The Challenges and Possibilities of Extracellular Vesicles as Therapeutic Vehicles'. European Journal of Pharmaceutics and Biopharmaceutics 144 :50-56. |
|
| Morris S; Geoghegan ND; Sadler JBA; Koester AM; Black HL; Laub M; Miller L; Heffernan L; Simpson JC; Mastick CC (2020) 'Characterisation of GLUT4 trafficking in HeLa cells: Comparable kinetics and orthologous trafficking mechanisms to 3T3-L1 adipocytes'. PeerJ 2020 (3) |
|
| Mysior MM; Simpson JC (2020) 'Emerging roles for Rho GTPases operating at the Golgi complex'. Small GTPases |
|
| Simpson JC (2020) 'Modification of the mammalian endomembrane system in healthy and diseased cells'. International Journal of Molecular Sciences 21 (6) |
|
| Whelan MVX; Ardill L; Koide K; Nakajima C; Suzuki Y; Simpson JC; Ó Cróinín T (2019) 'Acquisition of fluoroquinolone resistance leads to increased biofilm formation and pathogenicity in Campylobacter jejuni'. Scientific Reports 9 (1) |
|
| Dr Gavin Stewart | |
| Al-mousawi H; O'Mara M; Stewart G (2020) 'Identification of the HT-29 cell line as a model for investigating MCT1 transporters in sigmoid colon adenocarcinoma'. Biochemical and Biophysical Research Communications 529 (2) :218-223. |
|
| Farrell A; Stewart G (2019) 'Osmotic regulation of UT-B urea transporters in the RT4 human urothelial cell line'. Physiological Reports 7 (24) |
|
| Kacprzyk J; Parsons M; Maguire PB; Stewart GS (2019) 'Examining gender effects in different types of undergraduate science assessment'. Irish Educational Studies 38 (4) :467-480. |
|
| Zhong C; Farrell A; Stewart GS (2020) 'Localization of aquaporin-3 proteins in the bovine rumen'. Journal of Dairy Science 103 (3) :2814-2820. |
|
| Professor Emma Teeling | |
| Beaulieu M; Touzalin F; Dool SE; Teeling EC; Puechmaille SJ (2020) 'Timescale and colony-dependent relationships between environmental conditions and plasma oxidative markers in a long-lived bat species'. Conservation Physiology 8 (1) |
|
| Foley NM; Petit EJ; Brazier T; Finarelli JA; Hughes GM; Touzalin F; Puechmaille SJ; Teeling EC (2020) 'Drivers of longitudinal telomere dynamics in a long-lived bat species, Myotis myotis'. Molecular Ecology 29 (16) :2963-2977. |
|
| Huang Z; Whelan CV; Dechmann D; Teeling EC (2020) 'Genetic variation between long-lived versus short-lived bats illuminates the molecular signatures of longevity'. Aging 12 (16) :15962-15977. |
|
| Jebb D; Huang Z; Pippel M; Hughes GM; Lavrichenko K; Devanna P; Winkler S; Jermiin LS; Skirmuntt EC; Katzourakis A (2020) 'Six reference-quality genomes reveal evolution of bat adaptations'. Nature 583 (7817) :578-584. |
|
| Mahony S; Kamei RG; Teeling EC; Biju SD (2020) 'Taxonomic review of the Asian Horned Frogs (Amphibia: Megophrys Kuhl & Van Hasselt) of Northeast India and Bangladesh previously misidentified as M. parva (Boulenger), with descriptions of three new species'. Journal of Natural History 54 (43922) :119-194. |
|
| Minh BQ; Schmidt HA; Chernomor O; Schrempf D; Woodhams MD; Von Haeseler A; Lanfear R; Teeling E (2020) 'IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era'. Molecular Biology and Evolution 37 (5) :1530-1534. |
|
| Rocha R; Aziz SA; Brook CE; Carvalho WD; Cooper-Bohannon R; Frick WF; Huang JCC; Kingston T; López-Baucells A; Maas B (2020) 'Bat conservation and zoonotic disease risk: a research agenda to prevent misguided persecution in the aftermath of COVID-19'. Animal Conservation |
|
| Sandkam BA; Campello L; O'Brien C; Nandamuri SP; Gammerdinger WJ; Conte MA; Swaroop A; Carleton KL; Teeling E (2020) 'Tbx2a Modulates Switching of RH2 and LWS Opsin Gene Expression'. Molecular Biology and Evolution 37 (7) :2002-2014. |
|
| Skirmuntt EC; Escalera-Zamudio M; Teeling EC; Smith A; Katzourakis A (2020) 'The Potential Role of Endogenous Viral Elements in the Evolution of Bats as Reservoirs for Zoonotic Viruses'. Annual Review of Virology 7 :103-119. |
|
| Van Kruistum H; Guernsey MW; Baker JC; Kloet SL; Groenen MAM; Pollux BJA; Megens HJ; Teeling E (2020) 'The Genomes of the Livebearing Fish Species Poeciliopsis retropinna and Poeciliopsis turrubarensis Reflect Their Different Reproductive Strategies'. Molecular Biology and Evolution 37 (5) :1376-1386. |
|
| Yohe LR; Devanna P; Davies KTJ; Potter JHT; Rossiter SJ; Teeling EC; Vernes SC; Dávalos LM (2019) 'Tissue collection of bats for-omics analyses and primary cell culture'. Journal of Visualized Experiments 2019 (152) |
|
| Mr Conor Whelan | |
| Huang Z; Whelan CV; Dechmann D; Teeling EC (2020) 'Genetic variation between long-lived versus short-lived bats illuminates the molecular signatures of longevity'. Aging 12 (16) :15962-15977. |
|
| Dr Hannah White | |
| Dengler J; Matthews TJ; Steinbauer MJ; Wolfrum S; Boch S; Chiarucci A; Conradi T; Dembicz I; Marcenò C; García-Mijangos I (2020) 'Species–area relationships in continuous vegetation: Evidence from Palaearctic grasslands'. Journal of Biogeography 47 (1) :72-86. |
|
| Tiley AMM; White HJ; Foster GD; Bailey AM (2019) 'The ZtvelB Gene Is Required for Vegetative Growth and Sporulation in the Wheat Pathogen Zymoseptoria tritici'. Frontiers in Microbiology 10 |
|
| Assoc Professor Tom Wilkinson | |
| Ellis EE; Wilkinson TL (2020) 'Moth assemblages within urban domestic gardens respond positively to habitat complexity, but only at a scale that extends beyond the garden boundary'. Urban Ecosystems |
|
| Khan RSA; Ali Z; Niazi AK; Carolan JC; Wilkinson TL (2020) 'In silico characterization of a candidate protein from aphid gelling saliva with potential for aphid control in plants'. Protein and Peptide Letters 27 (2) :158-167. |
|
| Dr Jonathan Yearsley | |
| Yearsley JM; Salmanidou DM; Carlsson J; Burns D; Van Dover CL (2020) 'Biophysical models of persistent connectivity and barriers on the northern Mid-Atlantic Ridge'. Deep-Sea Research Part II: Topical Studies in Oceanography |
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Conference Publications
| Assoc Professor Jens Carlsson | |
| Casserly C; Turner J; O'Sullivan J; Bruen M; Carlsson J; Ball B; Atkinson S; Kelly-Quinn M (2020) Investigating the impact of low-head dams on sediment transport dynamics in gravel-cobble streams In: European Geosciences Union, | |
| Assoc Professor Mary Kelly-Quinn | |
| Casserly C; Turner J; O'Sullivan J; Bruen M; Carlsson J; Ball B; Atkinson S; Kelly-Quinn M (2020) Investigating the impact of low-head dams on sediment transport dynamics in gravel-cobble streams In: European Geosciences Union, | |
| Dr Gavin Stewart | |
| Stewart G; Zhong C (2020) Localization of UT‐B Urea Transporter in the Developing Bovine Rumen In: FASEB, | |
| Assoc Professor Mary Kelly-Quinn | |
| Ó hUallacháin D; Jennings E; Antunes P; Green S; Kilgarriff P; Linnane S; O'Callaghan P; O'Sullivan M; Regan F; Ryan M (2020) COSAINT: Cattle Exclusion from Watercourses: Environmental and Socio-economic Implications. Wexford: Environmental Protection Agency | |
| Kelly-Quinn M; Bruen M; Christie M; Bullock C; Feeley H; Hannigan E; Hallouin T; Kelly F; Matson R; Siwicka E (2020) Incorporation of Ecosystem Services values in the Integrated Management of Irish Freshwater Resources - ESManage. Wexford: Environmental Protection Agency | |
| Professor Bruce Osborne | |
| Whitfield M; Abdulla M; Benanti G; Burchill W; Marsh D; Osborne B; Roth B; Saunders M; Smith P; Williams M (2019) Scaling Soil Greenhouse Gas Emissions to the National Level. Dublin: Environmental Protection Agency | |
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Other Publications
| Dr Jan-Robert Baars | |
| Feeley H; Baars J; Kelly-Quinn M; Nelson B (2020) Ireland Red List No.13: Stoneflies (Plecoptera).. | |
| Assoc Professor Mary Kelly-Quinn | |
| Feeley H; Baars J; Kelly-Quinn M; Nelson B (2020) Ireland Red List No.13: Stoneflies (Plecoptera).. | |
| Assoc Professor Mary Kelly-Quinn | |
| Keith D; .........; Kelly-Quinn M (2020) Indicative distribution maps for Ecological Functional Groups - Level 3 of IUCN Global Ecosystem Typology. | |